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Spg004497 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004497
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionkeratin, type II cytoskeletal 3 isoform X2
Genome locationscaffold9:11311473..11313473
RNA-Seq ExpressionSpg004497
SyntenySpg004497
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7025112.1 hypothetical protein SDJN02_13935 [Cucurbita argyrosperma subsp. argyrosperma]3.0e-5191.15Show/hide
Query:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNV
        MPRNMNG+R EGGEDE+G++WKLPVLKSSRIG+LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQD+KRRYSNV
Subjt:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNV

Query:  GDLLHGHQSIFPQ
        GDLL+G QSIFPQ
Subjt:  GDLLHGHQSIFPQ

XP_022974026.1 keratin, type II cytoskeletal 3 isoform X2 [Cucurbita maxima]2.3e-5191.15Show/hide
Query:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNV
        MPRNMNG+R+EGGEDE+G++WKLPVLKSSRIG+LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQD+KRRYSNV
Subjt:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNV

Query:  GDLLHGHQSIFPQ
        GDLL+G QSIFPQ
Subjt:  GDLLHGHQSIFPQ

XP_023521209.1 fibroin heavy chain isoform X2 [Cucurbita pepo subsp. pepo]3.0e-5191.15Show/hide
Query:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNV
        MPRNMNG+R EG EDE+G++WKLPVLKSSRIG+LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQD+KRRYSNV
Subjt:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNV

Query:  GDLLHGHQSIFPQ
        GDLL+GHQSIFPQ
Subjt:  GDLLHGHQSIFPQ

XP_038889093.1 ctenidin-1 isoform X1 [Benincasa hispida]3.5e-5292.04Show/hide
Query:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNV
        MPRN NGNR +GGEDE G++W LPVLKSSR GKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQD+KRRYSNV
Subjt:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNV

Query:  GDLLHGHQSIFPQ
        GDLLHGHQSIFPQ
Subjt:  GDLLHGHQSIFPQ

XP_038889094.1 glycine-rich cell wall structural protein 1 isoform X2 [Benincasa hispida]3.5e-5292.04Show/hide
Query:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNV
        MPRN NGNR +GGEDE G++W LPVLKSSR GKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQD+KRRYSNV
Subjt:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNV

Query:  GDLLHGHQSIFPQ
        GDLLHGHQSIFPQ
Subjt:  GDLLHGHQSIFPQ

TrEMBL top hitse value%identityAlignment
A0A1S4E347 glycine-rich cell wall structural protein 11.0e-4989.29Show/hide
Query:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNV
        MPRNMNGNR   GEDE G++W LPVLKSSR G LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQD+KRRYSNV
Subjt:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNV

Query:  GDLLHGHQSIFP
        GD+L GHQSIFP
Subjt:  GDLLHGHQSIFP

A0A6J1EY31 keratin, type II cytoskeletal 2 epidermal isoform X15.5e-5191.07Show/hide
Query:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNV
        MPRNMNG+R EGGEDE+G++WKLPVLKSSRIG+LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQD+KRRYSNV
Subjt:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNV

Query:  GDLLHGHQSIFP
        GDLL+G QSIFP
Subjt:  GDLLHGHQSIFP

A0A6J1F360 keratin, type II cytoskeletal 2 epidermal isoform X21.4e-5191.15Show/hide
Query:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNV
        MPRNMNG+R EGGEDE+G++WKLPVLKSSRIG+LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQD+KRRYSNV
Subjt:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNV

Query:  GDLLHGHQSIFPQ
        GDLL+G QSIFPQ
Subjt:  GDLLHGHQSIFPQ

A0A6J1IA95 keratin, type II cytoskeletal 3 isoform X21.1e-5191.15Show/hide
Query:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNV
        MPRNMNG+R+EGGEDE+G++WKLPVLKSSRIG+LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQD+KRRYSNV
Subjt:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNV

Query:  GDLLHGHQSIFPQ
        GDLL+G QSIFPQ
Subjt:  GDLLHGHQSIFPQ

A0A6J1ICW2 keratin, type II cytoskeletal 3 isoform X14.2e-5191.07Show/hide
Query:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNV
        MPRNMNG+R+EGGEDE+G++WKLPVLKSSRIG+LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYG GRGIAQD+KRRYSNV
Subjt:  MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNV

Query:  GDLLHGHQSIFP
        GDLL+G QSIFP
Subjt:  GDLLHGHQSIFP

SwissProt top hitse value%identityAlignment
Q9JL61 DNA-binding protein Rfx58.2e-0448Show/hide
Query:  NGVIWKLPVLKSSRIGK---LGPAFGLGVGCGVGFGIGLVGGAGFGPGI-PGLQLGFGLGAGCGVGLGFGYGVGR
        N ++  +P L  +  G    LGP FG G G G G G GL  GAG GPG+ PGL  G G G G G+G G G G GR
Subjt:  NGVIWKLPVLKSSRIGK---LGPAFGLGVGCGVGFGIGLVGGAGFGPGI-PGLQLGFGLGAGCGVGLGFGYGVGR

Arabidopsis top hitse value%identityAlignment
AT1G27695.1 glycine-rich protein8.4e-0457.45Show/hide
Query:  GVGCGVGFGIGLVGGAGFG-PGIPGLQLGFGLGAGCGVGLGFGYGVG
        GVG G GFG+G   G G+G  G+P   LG G G GCGVGLG G+G G
Subjt:  GVGCGVGFGIGLVGGAGFG-PGIPGLQLGFGLGAGCGVGLGFGYGVG

AT1G27695.2 glycine-rich protein8.4e-0457.45Show/hide
Query:  GVGCGVGFGIGLVGGAGFG-PGIPGLQLGFGLGAGCGVGLGFGYGVG
        GVG G GFG+G   G G+G  G+P   LG G G GCGVGLG G+G G
Subjt:  GVGCGVGFGIGLVGGAGFG-PGIPGLQLGFGLGAGCGVGLGFGYGVG

AT1G66820.1 glycine-rich protein1.3e-0750Show/hide
Query:  LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQ-----LGFGLGAGCGVGLGFGYGVGRGIAQDE-KRRY
        +GP  G G+GCG G GIGL GG G G    GL      LGFG+G G G G G+G+GVG G + D+ K R+
Subjt:  LGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQ-----LGFGLGAGCGVGLGFGYGVGRGIAQDE-KRRY

AT4G10330.1 glycine-rich protein2.5e-3267.02Show/hide
Query:  NRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNVG
        NR+  G+D+ G++WKLP ++   IGK+GPAFGLGVGCG GFG GL+GG GFGPG+PGLQ G G GAGCG+G+GFGYGVGRG A D  R Y NVG
Subjt:  NRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNVG

AT4G14301.1 unknown protein5.0e-0455.17Show/hide
Query:  IGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRG
        IGK G  FG G+G G GFG G+  G GFG GI G   G G G G G G GFG G+G+G
Subjt:  IGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCGAAATATGAACGGGAACAGACAGGAAGGCGGAGAAGATGAAAATGGAGTAATATGGAAGCTTCCAGTCCTGAAATCTTCCCGTATCGGAAAGCTAGGTCCCGC
CTTCGGTCTGGGCGTTGGTTGTGGCGTCGGCTTTGGCATCGGCCTCGTCGGAGGTGCTGGATTTGGTCCGGGAATTCCTGGCTTACAACTTGGCTTTGGTCTTGGTGCTG
GATGTGGAGTTGGCTTAGGATTTGGTTATGGTGTTGGCAGGGGCATTGCCCAAGATGAAAAACGGAGATACTCTAATGTTGGGGATCTATTACATGGTCATCAAAGTATT
TTTCCTCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCGAAATATGAACGGGAACAGACAGGAAGGCGGAGAAGATGAAAATGGAGTAATATGGAAGCTTCCAGTCCTGAAATCTTCCCGTATCGGAAAGCTAGGTCCCGC
CTTCGGTCTGGGCGTTGGTTGTGGCGTCGGCTTTGGCATCGGCCTCGTCGGAGGTGCTGGATTTGGTCCGGGAATTCCTGGCTTACAACTTGGCTTTGGTCTTGGTGCTG
GATGTGGAGTTGGCTTAGGATTTGGTTATGGTGTTGGCAGGGGCATTGCCCAAGATGAAAAACGGAGATACTCTAATGTTGGGGATCTATTACATGGTCATCAAAGTATT
TTTCCTCAGTAA
Protein sequenceShow/hide protein sequence
MPRNMNGNRQEGGEDENGVIWKLPVLKSSRIGKLGPAFGLGVGCGVGFGIGLVGGAGFGPGIPGLQLGFGLGAGCGVGLGFGYGVGRGIAQDEKRRYSNVGDLLHGHQSI
FPQ