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Spg004503 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004503
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Descriptionpentatricopeptide repeat-containing protein isoform X1
Genome locationscaffold9:11483868..11492386
RNA-Seq ExpressionSpg004503
SyntenySpg004503
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6606995.1 hypothetical protein SDJN03_00337, partial [Cucurbita argyrosperma subsp. sororia]3.7e-1493.18Show/hide
Query:  KFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
        KF RIRSSANSN+QLTLR CRNCKAQFDPSLNHPRACRFHTAHF
Subjt:  KFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
XP_011651192.1 uncharacterized protein LOC101208221 [Cucumis sativus]6.3e-1457.14Show/hide
Query:  PNLE-FEISTIFSLLHARRQVRKQARRGGDDNATDGDQQPKFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
        PNL  +  S  F  LH++  V +          +     PK L IR SANSNNQLTLR CRNCKAQFDPSLNHPRACRFHT+HF
Subjt:  PNLE-FEISTIFSLLHARRQVRKQARRGGDDNATDGDQQPKFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
XP_022948602.1 uncharacterized protein LOC111452227 [Cucurbita moschata]3.7e-1493.18Show/hide
Query:  KFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
        KF RIRSSANSN+QLTLR CRNCKAQFDPSLNHPRACRFHTAHF
Subjt:  KFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
XP_022997797.1 uncharacterized protein LOC111492645 [Cucurbita maxima]1.6e-1491.11Show/hide
Query:  PKFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
        PK  RIRSSANS+NQLTLR CRNCKAQFDPSLNHPRACRFHTAHF
Subjt:  PKFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
XP_038879129.1 uncharacterized protein LOC120071126 [Benincasa hispida]3.0e-1663.29Show/hide
Query:  FEISTIFSLLHARRQVRKQARRGGDDNATDGDQQPKFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
        +  S  F  LH + QV +  R       +     PKFLRIRSSA+SNNQLTLR CRNCKAQFDPSLNHPRACRFHTAHF
Subjt:  FEISTIFSLLHARRQVRKQARRGGDDNATDGDQQPKFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
TrEMBL top hitse value%identityAlignment
A0A0A0L8V5 Uncharacterized protein3.0e-1457.14Show/hide
Query:  PNLE-FEISTIFSLLHARRQVRKQARRGGDDNATDGDQQPKFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
        PNL  +  S  F  LH++  V +          +     PK L IR SANSNNQLTLR CRNCKAQFDPSLNHPRACRFHT+HF
Subjt:  PNLE-FEISTIFSLLHARRQVRKQARRGGDDNATDGDQQPKFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
A0A1S3C5F2 uncharacterized protein LOC1034968574.0e-1490.91Show/hide
Query:  KFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
        KFL IR SANSNNQLTLR CRNCK+QFDPSLNHPRACRFHTAHF
Subjt:  KFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
A0A6J1CNX1 uncharacterized protein LOC1110131992.0e-1388.64Show/hide
Query:  KFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
        KF  IR+SANSNNQLTLR CRNCK QFDPSLNHPRACRFHTAHF
Subjt:  KFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
A0A6J1G9P5 uncharacterized protein LOC1114522271.8e-1493.18Show/hide
Query:  KFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
        KF RIRSSANSN+QLTLR CRNCKAQFDPSLNHPRACRFHTAHF
Subjt:  KFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
A0A6J1K626 uncharacterized protein LOC1114926458.0e-1591.11Show/hide
Query:  PKFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
        PK  RIRSSANS+NQLTLR CRNCKAQFDPSLNHPRACRFHTAHF
Subjt:  PKFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G38060.1 unknown protein1.7e-0965.79Show/hide
Query:  SSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
        ++++S+   TLR C+NCK QFDP LN+PRACRFHTAHF
Subjt:  SSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
AT5G38060.2 unknown protein1.7e-0965.79Show/hide
Query:  SSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF
        ++++S+   TLR C+NCK QFDP LN+PRACRFHTAHF
Subjt:  SSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGCAACTTCCACCTACTTGGCTCACCTGGAAGTTCTTCAGCCATCGACATAACTTCCACCACACACCTTGCATAACTGCCAAGCCAATGCCCGTGTGCAAACTTGT
GGAACCGCTAACATCACATCCTCTATCATGGTCAGACAATGCTGCAACCACAGAGCATACTCAGAAATCAAGAAACTACAAACCTAAAGCTCTGATACCACTTGTAAGGG
ACTACCGGACAACCACATATCTCCACAATGGTATGATATTGTCCACTTTGGGCATAAGCCCTCATGGCTTTGCTTTTGGTTCACCCCAAAAGGCCTCATACCAATGGAGA
TACTTAAGCTATAAAAAGGATCCAAATACGCCCAGGTTTTTTCCTGCATTTAAAGAAGGATACTGGAAAAGGCTAAGTGCAGAACAACTAAAAATGCATTCCACTTGCGC
TCACAATTCTCTTAGAAGATCTGAAGTTGTTGAAATGGGAACTCGAGTCGCCTTTTATAAACCTCCTAGGTGTAGTGGTCAGGTCGTCCATAGGGAAAAGGTTCGAACGC
AGTCAGATTTGAGGATCTCCAGAGCATTTCTAGACTATGACAAGCAATTGTTGTTTTCTGTTCTCCATGAGTATGACAACACTCTCCCCCAAGTTTACTCCTCCAATTTT
CCCAATTTGGAGTTTGAGATTTCCACGATTTTCTCCCTTCTTCACGCACGCAGACAAGTGCGCAAGCAAGCACGACGAGGAGGCGACGACAACGCGACTGACGGCGACCA
GCAACCCAAATTCCTTAGAATACGAAGCTCTGCAAACTCGAACAACCAATTGACGCTTAGAATTTGCAGGAACTGCAAGGCGCAATTTGACCCTTCCCTCAATCACCCTC
GAGCTTGTCGATTTCACACTGCCCATTTTAGAGCTCTTGGTTTATCTATGATTTGTAATCCCTGTTTTGTTAGTTGTGAAAGAGATGAGGTAAGAACTGCCCTGAATGTG
CTGCTTGGAATGGTTGTCGTCAATCGTGAATGGCCGCCATTAGTGGTCGTTCTAGTCGTCGTTCCAGTCGTGAATGTTCCAACCGTCAGTCGTCGTTGCGTCGCTTGGTC
ACTTGATTGCCGTCGCCGTCGCCTGCTCGCGTGCCTTGGTCGCCGTCTCCTTCGGTTTCTTGTGTTCGTGCGTGAAGGGAGAGAATCGTGGAATGAAGGAAAGGGTGAGA
GTAAAAGTGAAATAGGGTTGAAGATTTGGGGATTTTACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGCAACTTCCACCTACTTGGCTCACCTGGAAGTTCTTCAGCCATCGACATAACTTCCACCACACACCTTGCATAACTGCCAAGCCAATGCCCGTGTGCAAACTTGT
GGAACCGCTAACATCACATCCTCTATCATGGTCAGACAATGCTGCAACCACAGAGCATACTCAGAAATCAAGAAACTACAAACCTAAAGCTCTGATACCACTTGTAAGGG
ACTACCGGACAACCACATATCTCCACAATGGTATGATATTGTCCACTTTGGGCATAAGCCCTCATGGCTTTGCTTTTGGTTCACCCCAAAAGGCCTCATACCAATGGAGA
TACTTAAGCTATAAAAAGGATCCAAATACGCCCAGGTTTTTTCCTGCATTTAAAGAAGGATACTGGAAAAGGCTAAGTGCAGAACAACTAAAAATGCATTCCACTTGCGC
TCACAATTCTCTTAGAAGATCTGAAGTTGTTGAAATGGGAACTCGAGTCGCCTTTTATAAACCTCCTAGGTGTAGTGGTCAGGTCGTCCATAGGGAAAAGGTTCGAACGC
AGTCAGATTTGAGGATCTCCAGAGCATTTCTAGACTATGACAAGCAATTGTTGTTTTCTGTTCTCCATGAGTATGACAACACTCTCCCCCAAGTTTACTCCTCCAATTTT
CCCAATTTGGAGTTTGAGATTTCCACGATTTTCTCCCTTCTTCACGCACGCAGACAAGTGCGCAAGCAAGCACGACGAGGAGGCGACGACAACGCGACTGACGGCGACCA
GCAACCCAAATTCCTTAGAATACGAAGCTCTGCAAACTCGAACAACCAATTGACGCTTAGAATTTGCAGGAACTGCAAGGCGCAATTTGACCCTTCCCTCAATCACCCTC
GAGCTTGTCGATTTCACACTGCCCATTTTAGAGCTCTTGGTTTATCTATGATTTGTAATCCCTGTTTTGTTAGTTGTGAAAGAGATGAGGTAAGAACTGCCCTGAATGTG
CTGCTTGGAATGGTTGTCGTCAATCGTGAATGGCCGCCATTAGTGGTCGTTCTAGTCGTCGTTCCAGTCGTGAATGTTCCAACCGTCAGTCGTCGTTGCGTCGCTTGGTC
ACTTGATTGCCGTCGCCGTCGCCTGCTCGCGTGCCTTGGTCGCCGTCTCCTTCGGTTTCTTGTGTTCGTGCGTGAAGGGAGAGAATCGTGGAATGAAGGAAAGGGTGAGA
GTAAAAGTGAAATAGGGTTGAAGATTTGGGGATTTTACTAA
Protein sequenceShow/hide protein sequence
MVQLPPTWLTWKFFSHRHNFHHTPCITAKPMPVCKLVEPLTSHPLSWSDNAATTEHTQKSRNYKPKALIPLVRDYRTTTYLHNGMILSTLGISPHGFAFGSPQKASYQWR
YLSYKKDPNTPRFFPAFKEGYWKRLSAEQLKMHSTCAHNSLRRSEVVEMGTRVAFYKPPRCSGQVVHREKVRTQSDLRISRAFLDYDKQLLFSVLHEYDNTLPQVYSSNF
PNLEFEISTIFSLLHARRQVRKQARRGGDDNATDGDQQPKFLRIRSSANSNNQLTLRICRNCKAQFDPSLNHPRACRFHTAHFRALGLSMICNPCFVSCERDEVRTALNV
LLGMVVVNREWPPLVVVLVVVPVVNVPTVSRRCVAWSLDCRRRRLLACLGRRLLRFLVFVREGRESWNEGKGESKSEIGLKIWGFY