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Spg004509 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004509
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionE3 ubiquitin-protein ligase COP1-like
Genome locationscaffold9:11817834..11821749
RNA-Seq ExpressionSpg004509
SyntenySpg004509
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB53755.1 hypothetical protein L484_022412 [Morus notabilis]5.1e-0534.78Show/hide
Query:  FLRTGITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQVIVRGVAIDWSLGAINSLYNLQDFPHASYNEVAVAPSNEQLNAAAREVGIEG
        F+   I  HGW  FC  P      +V EFYAN+ ++    V V+ V + ++  AINS++ L++     Y + A   ++EQL     EV IEG
Subjt:  FLRTGITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQVIVRGVAIDWSLGAINSLYNLQDFPHASYNEVAVAPSNEQLNAAAREVGIEG

KAE8725369.1 hypothetical protein F3Y22_tig00008957pilonHSYRG00158 [Hibiscus syriacus]1.9e-0438.57Show/hide
Query:  ITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQVIVRGVAIDWSLGAINSLYNLQ--DFPHASYNEVA
        +T H W++F   P  VN+ +V EFY+NI E   + V+V G++I ++  AIN  + LQ  +  HAS+ + A
Subjt:  ITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQVIVRGVAIDWSLGAINSLYNLQ--DFPHASYNEVA

PON42276.1 hypothetical protein PanWU01x14_283280 [Parasponia andersonii]7.9e-0631.17Show/hide
Query:  VKRIRTNTPSPPSTDSEKEESENQEEIGKKIAEDETEKKNGEDKGKGFSGDLLH------FLRTGITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQ
        +KR+           SE  E+  +E I  +    E          KGF GD         F+   IT H W+LFC+ P+ + + +V EFYAN+   +   
Subjt:  VKRIRTNTPSPPSTDSEKEESENQEEIGKKIAEDETEKKNGEDKGKGFSGDLLH------FLRTGITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQ

Query:  VIVRGVAIDWSLGAINSLYNLQDFPHASYNEVAVAPSNEQLNAAAREVGIEGLE
        V VRGV +  S  AIN++Y L D P   ++E   A +  +L      V I G E
Subjt:  VIVRGVAIDWSLGAINSLYNLQDFPHASYNEVAVAPSNEQLNAAAREVGIEGLE

PON65868.1 hypothetical protein PanWU01x14_113570 [Parasponia andersonii]8.7e-0531.25Show/hide
Query:  VKRIRTNTPSPPSTDSEKEESENQEEIGKKIAEDETEKKNGEDKGKGFSGDLLH------FLRTGITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQ
        +KR+           SE  E+  +E I  +    E          KGF GD         F+   IT H W+LFC+ P+     +V EFYAN+   +   
Subjt:  VKRIRTNTPSPPSTDSEKEESENQEEIGKKIAEDETEKKNGEDKGKGFSGDLLH------FLRTGITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQ

Query:  VIVRGVAIDWSLGAINSLYNLQDFPHASYNEVAVAPSNEQLNAAAREVGIEGLEQWALPS
        V VRGV +  S  AIN++Y L D P   ++E   A +  +L      V I G E W + S
Subjt:  VIVRGVAIDWSLGAINSLYNLQDFPHASYNEVAVAPSNEQLNAAAREVGIEGLEQWALPS

XP_017625033.1 PREDICTED: E3 ubiquitin-protein ligase COP1-like [Gossypium arboreum]4.3e-0435.14Show/hide
Query:  DLLHFLRTGITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQVIVRGVAIDWSLGAINSLYNLQDFPHASYN
        D +  +R       WELFC K   V+ ++V EFYAN+   E  +V V G+ +  +  AIN  + L DF +  Y+
Subjt:  DLLHFLRTGITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQVIVRGVAIDWSLGAINSLYNLQDFPHASYN

TrEMBL top hitse value%identityAlignment
A0A2P5B0K0 Uncharacterized protein3.8e-0631.17Show/hide
Query:  VKRIRTNTPSPPSTDSEKEESENQEEIGKKIAEDETEKKNGEDKGKGFSGDLLH------FLRTGITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQ
        +KR+           SE  E+  +E I  +    E          KGF GD         F+   IT H W+LFC+ P+ + + +V EFYAN+   +   
Subjt:  VKRIRTNTPSPPSTDSEKEESENQEEIGKKIAEDETEKKNGEDKGKGFSGDLLH------FLRTGITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQ

Query:  VIVRGVAIDWSLGAINSLYNLQDFPHASYNEVAVAPSNEQLNAAAREVGIEGLE
        V VRGV +  S  AIN++Y L D P   ++E   A +  +L      V I G E
Subjt:  VIVRGVAIDWSLGAINSLYNLQDFPHASYNEVAVAPSNEQLNAAAREVGIEGLE

A0A2P5CXV1 Uncharacterized protein4.2e-0531.25Show/hide
Query:  VKRIRTNTPSPPSTDSEKEESENQEEIGKKIAEDETEKKNGEDKGKGFSGDLLH------FLRTGITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQ
        +KR+           SE  E+  +E I  +    E          KGF GD         F+   IT H W+LFC+ P+     +V EFYAN+   +   
Subjt:  VKRIRTNTPSPPSTDSEKEESENQEEIGKKIAEDETEKKNGEDKGKGFSGDLLH------FLRTGITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQ

Query:  VIVRGVAIDWSLGAINSLYNLQDFPHASYNEVAVAPSNEQLNAAAREVGIEGLEQWALPS
        V VRGV +  S  AIN++Y L D P   ++E   A +  +L      V I G E W + S
Subjt:  VIVRGVAIDWSLGAINSLYNLQDFPHASYNEVAVAPSNEQLNAAAREVGIEGLEQWALPS

A0A6A3CE04 Uncharacterized protein9.4e-0538.57Show/hide
Query:  ITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQVIVRGVAIDWSLGAINSLYNLQ--DFPHASYNEVA
        +T H W++F   P  VN+ +V EFY+NI E   + V+V G++I ++  AIN  + LQ  +  HAS+ + A
Subjt:  ITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQVIVRGVAIDWSLGAINSLYNLQ--DFPHASYNEVA

A0A6P4NL39 E3 ubiquitin-protein ligase COP1-like2.1e-0435.14Show/hide
Query:  DLLHFLRTGITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQVIVRGVAIDWSLGAINSLYNLQDFPHASYN
        D +  +R       WELFC K   V+ ++V EFYAN+   E  +V V G+ +  +  AIN  + L DF +  Y+
Subjt:  DLLHFLRTGITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQVIVRGVAIDWSLGAINSLYNLQDFPHASYN

W9QTD9 Uncharacterized protein2.5e-0534.78Show/hide
Query:  FLRTGITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQVIVRGVAIDWSLGAINSLYNLQDFPHASYNEVAVAPSNEQLNAAAREVGIEG
        F+   I  HGW  FC  P      +V EFYAN+ ++    V V+ V + ++  AINS++ L++     Y + A   ++EQL     EV IEG
Subjt:  FLRTGITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQVIVRGVAIDWSLGAINSLYNLQDFPHASYNEVAVAPSNEQLNAAAREVGIEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAAACGAGAGGAAAGAAAGAGAGAGAAGTAGAGGAGAATGTCCCTGCTACGCCTGAAGCTCTGAAGAAAAAGGCGAAGAAGAAAAGAATGCCTGTAGAAAGGGA
AGCCAAATGGCGAAAAAGACTTCAAGAAATTGAGGTTTTCGAAATATTAGAGAAGGTAATAGAGGACATTGCTGAAGAAATTTTGGAAGAGATAGTAAAGGATCCACCAC
GCCGCCGTCGTAAGCAGAAAGCAGGGCAAGTGAAAAGGATCCGGACCAACACTCCATCTCCTCCTTCAACTGACTCAGAGAAAGAAGAATCTGAAAATCAAGAAGAGATT
GGGAAGAAGATTGCAGAAGATGAAACCGAAAAGAAAAATGGTGAGGATAAGGGCAAAGGGTTCAGTGGTGATCTTCTGCATTTTCTGAGGACTGGCATTACAAATCATGG
CTGGGAGTTATTCTGTTCAAAGCCAGATCCTGTGAATTCACAAGTGGTGTGTGAATTCTATGCAAACATTGACGAATACGAGGGTTTCCAAGTTATAGTTCGTGGAGTAG
CCATCGACTGGAGTCTTGGTGCCATCAATTCGCTGTACAATCTTCAAGACTTCCCGCACGCTAGTTACAACGAGGTGGCAGTAGCACCATCTAACGAGCAGTTGAATGCT
GCTGCTCGAGAAGTTGGAATAGAAGGTCTTGAACAATGGGCCCTACCCTCTCTATGGCACGAAAGGGACTTCTGTTTGTTGGTTGGACCTCAAACAGGTCCATTAGGTCC
CACCGGTAGCTCTATAAGGGCGTTGAGATATCTTGCTCCCACAAGCACCTTCATCGATTACCCCAAGAGGATACTGGTGCAACTTACGTGGTGGTGTTCCTGTCAAATTT
GCACCAAGATTAAGATCCTTTTGCTGCTGGAATTTTCTGCAAATAGTGAGGGAAAAGGCGAAACGAATCAAGAACGTCATTCAAATTCGTGTCAGCCGGTTCTTCGGATA
GGCGCGGTTCGTTGTTTGACTCTCCGGTTCGTTGACTGGTTCGCCGGTTCGTTGACTTTCCAGCTTGGTTCATTGACTGGGCGGTTTTTTGAAGCTGGTTCAGTTGTTTT
CAGGTCCGTTTCAACCGGTTTTGAGCTGGTTCGAGCGGTTTTGGCAATTTTAAAGCGTTTTTGGTCCGGTTCGGGGCTACAGAAGGCTGTAATAGGATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAAACGAGAGGAAAGAAAGAGAGAGAAGTAGAGGAGAATGTCCCTGCTACGCCTGAAGCTCTGAAGAAAAAGGCGAAGAAGAAAAGAATGCCTGTAGAAAGGGA
AGCCAAATGGCGAAAAAGACTTCAAGAAATTGAGGTTTTCGAAATATTAGAGAAGGTAATAGAGGACATTGCTGAAGAAATTTTGGAAGAGATAGTAAAGGATCCACCAC
GCCGCCGTCGTAAGCAGAAAGCAGGGCAAGTGAAAAGGATCCGGACCAACACTCCATCTCCTCCTTCAACTGACTCAGAGAAAGAAGAATCTGAAAATCAAGAAGAGATT
GGGAAGAAGATTGCAGAAGATGAAACCGAAAAGAAAAATGGTGAGGATAAGGGCAAAGGGTTCAGTGGTGATCTTCTGCATTTTCTGAGGACTGGCATTACAAATCATGG
CTGGGAGTTATTCTGTTCAAAGCCAGATCCTGTGAATTCACAAGTGGTGTGTGAATTCTATGCAAACATTGACGAATACGAGGGTTTCCAAGTTATAGTTCGTGGAGTAG
CCATCGACTGGAGTCTTGGTGCCATCAATTCGCTGTACAATCTTCAAGACTTCCCGCACGCTAGTTACAACGAGGTGGCAGTAGCACCATCTAACGAGCAGTTGAATGCT
GCTGCTCGAGAAGTTGGAATAGAAGGTCTTGAACAATGGGCCCTACCCTCTCTATGGCACGAAAGGGACTTCTGTTTGTTGGTTGGACCTCAAACAGGTCCATTAGGTCC
CACCGGTAGCTCTATAAGGGCGTTGAGATATCTTGCTCCCACAAGCACCTTCATCGATTACCCCAAGAGGATACTGGTGCAACTTACGTGGTGGTGTTCCTGTCAAATTT
GCACCAAGATTAAGATCCTTTTGCTGCTGGAATTTTCTGCAAATAGTGAGGGAAAAGGCGAAACGAATCAAGAACGTCATTCAAATTCGTGTCAGCCGGTTCTTCGGATA
GGCGCGGTTCGTTGTTTGACTCTCCGGTTCGTTGACTGGTTCGCCGGTTCGTTGACTTTCCAGCTTGGTTCATTGACTGGGCGGTTTTTTGAAGCTGGTTCAGTTGTTTT
CAGGTCCGTTTCAACCGGTTTTGAGCTGGTTCGAGCGGTTTTGGCAATTTTAAAGCGTTTTTGGTCCGGTTCGGGGCTACAGAAGGCTGTAATAGGATAG
Protein sequenceShow/hide protein sequence
MAKTRGKKEREVEENVPATPEALKKKAKKKRMPVEREAKWRKRLQEIEVFEILEKVIEDIAEEILEEIVKDPPRRRRKQKAGQVKRIRTNTPSPPSTDSEKEESENQEEI
GKKIAEDETEKKNGEDKGKGFSGDLLHFLRTGITNHGWELFCSKPDPVNSQVVCEFYANIDEYEGFQVIVRGVAIDWSLGAINSLYNLQDFPHASYNEVAVAPSNEQLNA
AAREVGIEGLEQWALPSLWHERDFCLLVGPQTGPLGPTGSSIRALRYLAPTSTFIDYPKRILVQLTWWCSCQICTKIKILLLLEFSANSEGKGETNQERHSNSCQPVLRI
GAVRCLTLRFVDWFAGSLTFQLGSLTGRFFEAGSVVFRSVSTGFELVRAVLAILKRFWSGSGLQKAVIG