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Spg004513 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004513
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationscaffold9:12399083..12400506
RNA-Seq ExpressionSpg004513
SyntenySpg004513
Gene Ontology termsNA
InterPro domainsIPR029472 - Retrotransposon Copia-like, N-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN61515.1 hypothetical protein Csa_006367 [Cucumis sativus]3.9e-0961.67Show/hide
Query:  SDSSFANQPTSQSIIDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNK
        + SS  NQ T+ S I+ Y+NPY+LHHS+ T+IVLVS LLTE+NY SWSQA  I L  KNK
Subjt:  SDSSFANQPTSQSIIDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNK

XP_022142327.1 uncharacterized protein LOC111012468 [Momordica charantia]4.6e-1058.33Show/hide
Query:  SDSSFANQPTSQSIIDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNK
        S SS  +   + SI++ Y+NPYYLHHSD T++VLVS+LL E+NY SWS++ +I LTVKNK
Subjt:  SDSSFANQPTSQSIIDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNK

XP_022154608.1 uncharacterized protein LOC111021831 [Momordica charantia]5.1e-0950.7Show/hide
Query:  DSSFANQPTSQSIIDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNK-----GTVRPPI
        DSS  N  +S S +D   NPYYLHH+D T +VLV++ LTE NY+SWS++ LI L++KNK     G++  PI
Subjt:  DSSFANQPTSQSIIDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNK-----GTVRPPI

XP_038887186.1 uncharacterized protein LOC120077373 [Benincasa hispida]3.0e-0970.83Show/hide
Query:  SIIDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNK
        S ++ Y NPY+LH SD T++VLVS LLTESNY+SWSQA  IGLTVKNK
Subjt:  SIIDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNK

XP_038902375.1 uncharacterized protein LOC120089012 [Benincasa hispida]3.0e-0964.58Show/hide
Query:  SIIDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNK
        ++++ YTN Y+LHHSD TN+V+VS LLTE+NY SWSQ  +IGL VKNK
Subjt:  SIIDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNK

TrEMBL top hitse value%identityAlignment
A0A0A0LI19 Retrotran_gag_3 domain-containing protein1.9e-0961.67Show/hide
Query:  SDSSFANQPTSQSIIDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNK
        + SS  NQ T+ S I+ Y+NPY+LHHS+ T+IVLVS LLTE+NY SWSQA  I L  KNK
Subjt:  SDSSFANQPTSQSIIDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNK

A0A5D3B9Q7 Retrotran_gag_3 domain-containing protein1.6e-0853.33Show/hide
Query:  SDSSFANQPTSQSIIDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNK
        S S+    PT  S+I +Y NPYYLH    TN++LV  LLTESNY SW++A ++GLT+K K
Subjt:  SDSSFANQPTSQSIIDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNK

A0A6J1CMF8 uncharacterized protein LOC1110124682.2e-1058.33Show/hide
Query:  SDSSFANQPTSQSIIDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNK
        S SS  +   + SI++ Y+NPYYLHHSD T++VLVS+LL E+NY SWS++ +I LTVKNK
Subjt:  SDSSFANQPTSQSIIDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNK

A0A6J1DIP8 uncharacterized protein LOC1110203991.2e-0867.39Show/hide
Query:  IDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNK
        I+ YTNPY+LHHSD T++VLVS+ LT  NY SWS++ LI LTVKNK
Subjt:  IDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNK

A0A6J1DKR8 uncharacterized protein LOC1110218312.5e-0950.7Show/hide
Query:  DSSFANQPTSQSIIDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNK-----GTVRPPI
        DSS  N  +S S +D   NPYYLHH+D T +VLV++ LTE NY+SWS++ LI L++KNK     G++  PI
Subjt:  DSSFANQPTSQSIIDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNK-----GTVRPPI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCGATTCTTCCTTTGCAAATCAGCCAACCAGTCAATCCATCATTGACCTTTATACCAATCCCTACTACCTTCATCACTCCGATGGAACAAATATTGTTCTAGT
TTCTGAGCTGCTCACAGAGTCAAATTACAATTCTTGGAGTCAAGCAAAGTTAATTGGGCTTACAGTGAAAAATAAGGGCACTGTTAGGCCCCCAATTACCAAGACCTATG
AGCGCAGGGGTAAAAAGGGAATTAAGGCAGCTGAAGCTTCTAATAACGGTCTGGACCAGGGGAGTGGGGACCGAAAACTTGTTAGATACCTAACAAATTGGTATCAGAGC
ACGTCACCCTGGGGAGAACAAGAAGCATGGCTCAAAAACAGGTTGAAGAGAGAGTTGAAGCGACAGAGAAGAAGATTGTCAGCCTGGAAGAGTCGGTCCAACGATAGAGA
AAGGAATGGAAAGAATGATGATGGTTATGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCTTCCGATTCTTCCTTTGCAAATCAGCCAACCAGTCAATCCATCATTGACCTTTATACCAATCCCTACTACCTTCATCACTCCGATGGAACAAATATTGTTCTAGT
TTCTGAGCTGCTCACAGAGTCAAATTACAATTCTTGGAGTCAAGCAAAGTTAATTGGGCTTACAGTGAAAAATAAGGGCACTGTTAGGCCCCCAATTACCAAGACCTATG
AGCGCAGGGGTAAAAAGGGAATTAAGGCAGCTGAAGCTTCTAATAACGGTCTGGACCAGGGGAGTGGGGACCGAAAACTTGTTAGATACCTAACAAATTGGTATCAGAGC
ACGTCACCCTGGGGAGAACAAGAAGCATGGCTCAAAAACAGGTTGAAGAGAGAGTTGAAGCGACAGAGAAGAAGATTGTCAGCCTGGAAGAGTCGGTCCAACGATAGAGA
AAGGAATGGAAAGAATGATGATGGTTATGGCTGA
Protein sequenceShow/hide protein sequence
MASDSSFANQPTSQSIIDLYTNPYYLHHSDGTNIVLVSELLTESNYNSWSQAKLIGLTVKNKGTVRPPITKTYERRGKKGIKAAEASNNGLDQGSGDRKLVRYLTNWYQS
TSPWGEQEAWLKNRLKRELKRQRRRLSAWKSRSNDRERNGKNDDGYG