; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg004521 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004521
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold9:13564179..13566630
RNA-Seq ExpressionSpg004521
SyntenySpg004521
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-1964.89Show/hide
Query:  MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSL
        +SM T EEENQC MST  R SAF+RL++STSKK R STS FDRLK+T+DQ QR+M + + K F E + D K+ S VPSRMKRK SV INTEGSL
Subjt:  MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSL

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.3e-1964.89Show/hide
Query:  MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSL
        +SM T EEENQC  ST  R SAF+RL++STSKK R STS FDRLK+T+DQ QR+M +L+ K F E + D K+ S VPSRMKRK SV INTEGSL
Subjt:  MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSL

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]2.3e-1964.89Show/hide
Query:  MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSL
        +SM T EEENQC  ST  R SAF+RL++STSKK R STS FDRLK+T+DQ QR+M +L+ K F E + D K+ S VPSRMKRK SV INTEGSL
Subjt:  MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSL

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.0e-1963.83Show/hide
Query:  MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSL
        +SM T EEENQC MST TR SAF+RL++S SKK R STS FDRLK+T+DQ QR+M +L+ K F E + D K+ S VPSR+KRK S+ INTEGSL
Subjt:  MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSL

TYK18884.1 gag protease polyprotein [Cucumis melo var. makuwa]8.7e-1962.77Show/hide
Query:  MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSL
        +SM T EEENQC  ST  R SAF+RL++STSKK R STS FDRLK+T+DQ QR+M +L+ K F E + D K+ S VPSRMKRK S+ INT+GSL
Subjt:  MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSL

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein6.5e-2064.89Show/hide
Query:  MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSL
        +SM T EEENQC MST  R SAF+RL++STSKK R STS FDRLK+T+DQ QR+M + + K F E + D K+ S VPSRMKRK SV INTEGSL
Subjt:  MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSL

A0A5A7TGM1 Retrotransposon gag protein4.2e-1963.83Show/hide
Query:  MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSL
        +S+ T EEENQC  ST TR SAF+ L++STSKK R STS FDRLK+ +DQ QR+M +L+VK F E + D K+ S VPSRMKRK SV INTEGSL
Subjt:  MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSL

A0A5A7TQ06 Retrotransposon gag protein1.1e-1964.89Show/hide
Query:  MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSL
        +SM T EEENQC  ST  R SAF+RL++STSKK R STS FDRLK+T+DQ QR+M +L+ K F E + D K+ S VPSRMKRK SV INTEGSL
Subjt:  MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSL

A0A5A7U974 Retrotransposon gag protein1.5e-1963.83Show/hide
Query:  MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSL
        +SM T EEENQC MST TR SAF+RL++S SKK R STS FDRLK+T+DQ QR+M +L+ K F E + D K+ S VPSR+KRK S+ INTEGSL
Subjt:  MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSL

A0A5D3BBF9 Gag protease polyprotein1.1e-1964.89Show/hide
Query:  MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSL
        +SM T EEENQC  ST  R SAF+RL++STSKK R STS FDRLK+T+DQ QR+M +L+ K F E + D K+ S VPSRMKRK SV INTEGSL
Subjt:  MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGTCACGACAGAAGAAGAAAATCAATGTTCTATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAATGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTTAAAGTAACAGACGATCAACCTCAAAGAAAGATGGATAACTTAGAGGTGAAACTGTTCGATGAAATAAGCAGTGACAAAAAGCTTCAAA
GTATTGTCCCGTCACGTATGAAAAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCGAAGGTTCTCACGCTGCTGCTACGCTGCGCCTTCTTTCTCCA
AGTTCGAGAGTTTTCACCCTGCTTCGCTGCAGCTCCTTCCTCCAAGTTCAAAGGTTCTCAAGCTGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGATCACGTGTTAC
TTCGCTGCAGTATTTTTTTTCCAAGTTCGAAGGTTCTCACGCTGCTTTGCTGCAGCCCCTTCCTCCAAGTTCGAAGTTCCTTAATCCAAGTTCGAAGGTTCTCATGCTGC
TTCACTGCAGTTCCTTCCTCCAAGTTGAAGGTTCTCACGCTGCTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAATTATGAGAACTCACCCTAAGTTC
GAAGGTTCTCACGCTGCTGCTGCAGTTCCTTCCTCCAAGTTCGATGGTTCTCACGCTGCTTCGCTACAGTTCCTTCCTCCAAGTTCGATGGTTCTCACGTTGCTACGTTG
CTTCCTTGAAGTTATGAGAACTCACCCTAAGTTCGAAGGTTCTCACGCTGCTGCTGCAGTTCCTTCCTCCAAGTTCGATGGTTCTCACGCTGCTTCGCTACAGTTCCTTC
CTCCAAGTTCGATGGTTCTCACGTTGCTACGTTGCCGGTTCGCTGCTAGCTTGCTTGTTGTTCCTTCTCCATGCTACGCTGCCTTGGGAAATATGTATCTTAAAACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGTCACGACAGAAGAAGAAAATCAATGTTCTATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAATGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTTAAAGTAACAGACGATCAACCTCAAAGAAAGATGGATAACTTAGAGGTGAAACTGTTCGATGAAATAAGCAGTGACAAAAAGCTTCAAA
GTATTGTCCCGTCACGTATGAAAAGGAAGTTCTCTGTTCTCATAAATACAGAAGGTTCCTTGAAGTTCGAAGGTTCTCACGCTGCTGCTACGCTGCGCCTTCTTTCTCCA
AGTTCGAGAGTTTTCACCCTGCTTCGCTGCAGCTCCTTCCTCCAAGTTCAAAGGTTCTCAAGCTGCTTCGCTGCAGTTCCTTCCTCCAAGTTTGAAGGATCACGTGTTAC
TTCGCTGCAGTATTTTTTTTCCAAGTTCGAAGGTTCTCACGCTGCTTTGCTGCAGCCCCTTCCTCCAAGTTCGAAGTTCCTTAATCCAAGTTCGAAGGTTCTCATGCTGC
TTCACTGCAGTTCCTTCCTCCAAGTTGAAGGTTCTCACGCTGCTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAATTATGAGAACTCACCCTAAGTTC
GAAGGTTCTCACGCTGCTGCTGCAGTTCCTTCCTCCAAGTTCGATGGTTCTCACGCTGCTTCGCTACAGTTCCTTCCTCCAAGTTCGATGGTTCTCACGTTGCTACGTTG
CTTCCTTGAAGTTATGAGAACTCACCCTAAGTTCGAAGGTTCTCACGCTGCTGCTGCAGTTCCTTCCTCCAAGTTCGATGGTTCTCACGCTGCTTCGCTACAGTTCCTTC
CTCCAAGTTCGATGGTTCTCACGTTGCTACGTTGCCGGTTCGCTGCTAGCTTGCTTGTTGTTCCTTCTCCATGCTACGCTGCCTTGGGAAATATGTATCTTAAAACTTAA
Protein sequenceShow/hide protein sequence
MSMVTTEEENQCSMSTSTRPSAFQRLNVSTSKKSRSSTSVFDRLKVTDDQPQRKMDNLEVKLFDEISSDKKLQSIVPSRMKRKFSVLINTEGSLKFEGSHAAATLRLLSP
SSRVFTLLRCSSFLQVQRFSSCFAAVPSSKFEGSRVTSLQYFFSKFEGSHAALLQPLPPSSKFLNPSSKVLMLLHCSSFLQVEGSHAASMSTSTRPSAFQRLIMRTHPKF
EGSHAAAAVPSSKFDGSHAASLQFLPPSSMVLTLLRCFLEVMRTHPKFEGSHAAAAVPSSKFDGSHAASLQFLPPSSMVLTLLRCRFAASLLVVPSPCYAALGNMYLKT