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Spg004532 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004532
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold9:13636307..13651853
RNA-Seq ExpressionSpg004532
SyntenySpg004532
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.9e-0935.84Show/hide
Query:  CKPETSLGLFSLAIYCR-----KLDLSYCGLIGWIKVVSLGKIERSREARICVFCVRGISGQIGLDSRFHFFRPRGNRSRLQTRKLAKTVEIKLPVPDTL
        CKPE SLG F L I  +      +  S C     I +  L  +E  R            SG   + S      PRGNR  L T KL KTVEI+LPVPDTL
Subjt:  CKPETSLGLFSLAIYCR-----KLDLSYCGLIGWIKVVSLGKIERSREARICVFCVRGISGQIGLDSRFHFFRPRGNRSRLQTRKLAKTVEIKLPVPDTL

Query:  PTS-----------------------LLKVPDQAPIRS-TFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGL
        PTS                       L   P    + S    EG    +  DD+ WLHA+F  K AG PGGG+
Subjt:  PTS-----------------------LLKVPDQAPIRS-TFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGL

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.7e-0943.69Show/hide
Query:  DSRFHFFRPRGNRSRLQTRKLAKT-----------------VEIKLPVPDTLPTSLLKVPDQAPIRSTFQEGQRVS--LEEDDVRWLHAIFRTKLAGGPG
        + + +  RPRGNR  LQT KL KT                 VEI+LPVPDTLPTS            +F+   R +  +  DDV WLHA+FR K AGGPG
Subjt:  DSRFHFFRPRGNRSRLQTRKLAKT-----------------VEIKLPVPDTLPTSLLKVPDQAPIRSTFQEGQRVS--LEEDDVRWLHAIFRTKLAGGPG

Query:  GGL
        GG+
Subjt:  GGL

KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]8.3e-1276.47Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS  + +TW+ELY ESV++
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]3.1e-1163.24Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS  +SSTW+ELY+E V++
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]3.1e-1163.24Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS  +SSTW+ELY+E V++
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein1.4e-0935.84Show/hide
Query:  CKPETSLGLFSLAIYCR-----KLDLSYCGLIGWIKVVSLGKIERSREARICVFCVRGISGQIGLDSRFHFFRPRGNRSRLQTRKLAKTVEIKLPVPDTL
        CKPE SLG F L I  +      +  S C     I +  L  +E  R            SG   + S      PRGNR  L T KL KTVEI+LPVPDTL
Subjt:  CKPETSLGLFSLAIYCR-----KLDLSYCGLIGWIKVVSLGKIERSREARICVFCVRGISGQIGLDSRFHFFRPRGNRSRLQTRKLAKTVEIKLPVPDTL

Query:  PTS-----------------------LLKVPDQAPIRS-TFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGL
        PTS                       L   P    + S    EG    +  DD+ WLHA+F  K AG PGGG+
Subjt:  PTS-----------------------LLKVPDQAPIRS-TFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGL

A0A5A7V638 Uncharacterized protein4.0e-1276.47Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS  + +TW+ELY ESV++
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI

A0A5A7VMG9 Reverse transcriptase1.5e-1163.24Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS  +SSTW+ELY+E V++
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI

A0A5D3BAD1 Retrotrans_gag domain-containing protein8.3e-1043.69Show/hide
Query:  DSRFHFFRPRGNRSRLQTRKLAKT-----------------VEIKLPVPDTLPTSLLKVPDQAPIRSTFQEGQRVS--LEEDDVRWLHAIFRTKLAGGPG
        + + +  RPRGNR  LQT KL KT                 VEI+LPVPDTLPTS            +F+   R +  +  DDV WLHA+FR K AGGPG
Subjt:  DSRFHFFRPRGNRSRLQTRKLAKT-----------------VEIKLPVPDTLPTSLLKVPDQAPIRSTFQEGQRVS--LEEDDVRWLHAIFRTKLAGGPG

Query:  GGL
        GG+
Subjt:  GGL

A0A5D3DX39 Reverse transcriptase1.5e-1163.24Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS  +SSTW+ELY+E V++
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRLSSSTWVELYIESVYI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATTAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTCTTGTTCAACGTTCAGGAGGGTCAGCGGACCTTGGAAGGTAGGGTTGGCTGCCGAGATC
AGTGTGAGAGGACCCTTGAAGGAGAAGTAGATGAGTGTTCCCTTAAGTGGCGACTTCGATACTTGGACAAAGGGATCTCGCCCTCTCACTACCCCGAGATGGACTTTCTG
TTTAATGGTTGGACCATAAACATGTTGTTCATTAGAGGAGCACTGGCTAGCGTCTCGACGCCGGCCCTTCCGTCAGTGGGTCGAGATTCGGGGCAGCGTCGAGACGCTTG
CTCTCGGGTTGCTCCAAAATATGCACTTTGTAAACCCGAGACTTCCCTAGGATTATTTTCTCTTGCCATATATTGTAGGAAGTTGGATTTGAGTTATTGTGGTCTCATTG
GTTGGATTAAAGTTGTTTCCTTGGGAAAGATAGAGCGTAGCAGAGAAGCTCGAATCTGTGTTTTCTGTGTTCGGGGCATTTCTGGACAAATTGGTTTGGATTCTCGTTTT
CATTTCTTCAGGCCAAGAGGAAATAGGTCGAGACTACAGACCAGGAAACTAGCTAAGACTGTAGAGATCAAGCTCCCGGTGCCTGATACACTGCCAACGTCTCTGCTGAA
AGTTCCAGATCAAGCTCCAATACGTTCAACGTTTCAGGAGGGTCAACGAGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGACTAAGCTAGCAG
GTGGTCCGGGAGGGGGCCTGAAAATGGGGCAGCGTTGCGACGCTGTGACGTATGCTTCTTGGGTAGCAAGTCAGGACAGCGTCGAGACGCTAGGGGACAACGTCGCGACG
CTGTCCTATTTCCAGAACGTTCCAGGCACGGTTTTGAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATTAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCTATATTGTAAATGTCTTGTTCAACGTTCAGGAGGGTCAGCGGACCTTGGAAGGTAGGGTTGGCTGCCGAGATC
AGTGTGAGAGGACCCTTGAAGGAGAAGTAGATGAGTGTTCCCTTAAGTGGCGACTTCGATACTTGGACAAAGGGATCTCGCCCTCTCACTACCCCGAGATGGACTTTCTG
TTTAATGGTTGGACCATAAACATGTTGTTCATTAGAGGAGCACTGGCTAGCGTCTCGACGCCGGCCCTTCCGTCAGTGGGTCGAGATTCGGGGCAGCGTCGAGACGCTTG
CTCTCGGGTTGCTCCAAAATATGCACTTTGTAAACCCGAGACTTCCCTAGGATTATTTTCTCTTGCCATATATTGTAGGAAGTTGGATTTGAGTTATTGTGGTCTCATTG
GTTGGATTAAAGTTGTTTCCTTGGGAAAGATAGAGCGTAGCAGAGAAGCTCGAATCTGTGTTTTCTGTGTTCGGGGCATTTCTGGACAAATTGGTTTGGATTCTCGTTTT
CATTTCTTCAGGCCAAGAGGAAATAGGTCGAGACTACAGACCAGGAAACTAGCTAAGACTGTAGAGATCAAGCTCCCGGTGCCTGATACACTGCCAACGTCTCTGCTGAA
AGTTCCAGATCAAGCTCCAATACGTTCAACGTTTCAGGAGGGTCAACGAGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGACTAAGCTAGCAG
GTGGTCCGGGAGGGGGCCTGAAAATGGGGCAGCGTTGCGACGCTGTGACGTATGCTTCTTGGGTAGCAAGTCAGGACAGCGTCGAGACGCTAGGGGACAACGTCGCGACG
CTGTCCTATTTCCAGAACGTTCCAGGCACGGTTTTGAGCTGA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRLSSSTWVELYIESVYIVNVLFNVQEGQRTLEGRVGCRDQCERTLEGEVDECSLKWRLRYLDKGISPSHYPEMDFL
FNGWTINMLFIRGALASVSTPALPSVGRDSGQRRDACSRVAPKYALCKPETSLGLFSLAIYCRKLDLSYCGLIGWIKVVSLGKIERSREARICVFCVRGISGQIGLDSRF
HFFRPRGNRSRLQTRKLAKTVEIKLPVPDTLPTSLLKVPDQAPIRSTFQEGQRVSLEEDDVRWLHAIFRTKLAGGPGGGLKMGQRCDAVTYASWVASQDSVETLGDNVAT
LSYFQNVPGTVLS