; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg004533 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004533
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold9:10747877..10750742
RNA-Seq ExpressionSpg004533
SyntenySpg004533
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032935.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.9e-1148.11Show/hide
Query:  LNETFSKTFHKKEKENLATSYCIDVE-------EIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSM-TATEEHQCSVSTSTRPSAFQRLSVSISKKSLFS
        L E F ++F +   + +     ++V+       E+DNS   +Q+TSVFD IKP TTR SVFQR+SM T  EE+QC +STSTR SAF+RLS+S SKK   S
Subjt:  LNETFSKTFHKKEKENLATSYCIDVE-------EIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSM-TATEEHQCSVSTSTRPSAFQRLSVSISKKSLFS

Query:  TSVLKK
        TS   +
Subjt:  TSVLKK

KAA0050143.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.8e-1250.46Show/hide
Query:  LNETFSKTF---HKKEKENLATSYCIDV----------EEIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSM-TATEEHQCSVSTSTRPSAFQRLSVSIS
        L E F ++F   H KE   + T + + +          +E+DNS + +Q+TSVFDRIKP TTR SVFQR+SM T  EE+QC  STSTR SAF+RLS+S S
Subjt:  LNETFSKTF---HKKEKENLATSYCIDV----------EEIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSM-TATEEHQCSVSTSTRPSAFQRLSVSIS

Query:  KKSLFSTSV
        KK   ST V
Subjt:  KKSLFSTSV

KAA0051327.1 Retrotransposon gag protein [Cucumis melo var. makuwa]7.5e-1249.54Show/hide
Query:  LNETFSKTF---HKKEKENLATSYCIDV----------EEIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSM-TATEEHQCSVSTSTRPSAFQRLSVSIS
        L E F ++F   H KE   +   + + +          EE++NS + +QRTSVFDRIKP TTR SVFQR+SM T  EE+QC  STSTR SAF+RL++S S
Subjt:  LNETFSKTF---HKKEKENLATSYCIDV----------EEIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSM-TATEEHQCSVSTSTRPSAFQRLSVSIS

Query:  KKSLFSTSV
        KK   STS+
Subjt:  KKSLFSTSV

KAA0065363.1 Retrotransposon gag protein [Cucumis melo var. makuwa]6.4e-1146.85Show/hide
Query:  MLNETFSKTF---HKKEKENLATSYCIDVEEIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMT-ATEEHQCSVSTSTRPSAFQRLSVSISKK-----SL
        +L E F ++F   H KE   +   + + + E+DNS + +Q T VFDRIKP TTR S+FQR+SM    EE+QC  STSTR SAF++LS+S SKK     SL
Subjt:  MLNETFSKTF---HKKEKENLATSYCIDVEEIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMT-ATEEHQCSVSTSTRPSAFQRLSVSISKK-----SL

Query:  FSTSVLKKDGQ
        F    +K + Q
Subjt:  FSTSVLKKDGQ

TYK04207.1 hypothetical protein E5676_scaffold24967G00060 [Cucumis melo var. makuwa]4.9e-1144.62Show/hide
Query:  LNETFSKTF---HKKEKENLATSYCIDV----------EEIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSM-TATEEHQCSVSTSTRPSAFQRLSVSIS
        L E FS++F   H KE   + T +   +          +E+DNS + +QRTSVFDRIKP TTR SVFQR+SM T  EE+QC  ST T+ SAF+RLS+S S
Subjt:  LNETFSKTF---HKKEKENLATSYCIDV----------EEIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSM-TATEEHQCSVSTSTRPSAFQRLSVSIS

Query:  KKSLFSTSV-----LKKDGQLGKTSFLQVQ
        KK   ST       +K D Q  +  +L+ +
Subjt:  KKSLFSTSV-----LKKDGQLGKTSFLQVQ

TrEMBL top hitse value%identityAlignment
A0A5A7U2K7 Retrotransposon gag protein2.8e-1250.46Show/hide
Query:  LNETFSKTF---HKKEKENLATSYCIDV----------EEIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSM-TATEEHQCSVSTSTRPSAFQRLSVSIS
        L E F ++F   H KE   + T + + +          +E+DNS + +Q+TSVFDRIKP TTR SVFQR+SM T  EE+QC  STSTR SAF+RLS+S S
Subjt:  LNETFSKTF---HKKEKENLATSYCIDV----------EEIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSM-TATEEHQCSVSTSTRPSAFQRLSVSIS

Query:  KKSLFSTSV
        KK   ST V
Subjt:  KKSLFSTSV

A0A5A7UA77 Retrotransposon gag protein3.6e-1249.54Show/hide
Query:  LNETFSKTF---HKKEKENLATSYCIDV----------EEIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSM-TATEEHQCSVSTSTRPSAFQRLSVSIS
        L E F ++F   H KE   +   + + +          EE++NS + +QRTSVFDRIKP TTR SVFQR+SM T  EE+QC  STSTR SAF+RL++S S
Subjt:  LNETFSKTF---HKKEKENLATSYCIDV----------EEIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSM-TATEEHQCSVSTSTRPSAFQRLSVSIS

Query:  KKSLFSTSV
        KK   STS+
Subjt:  KKSLFSTSV

A0A5D3BXG7 Uncharacterized protein2.4e-1144.62Show/hide
Query:  LNETFSKTF---HKKEKENLATSYCIDV----------EEIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSM-TATEEHQCSVSTSTRPSAFQRLSVSIS
        L E FS++F   H KE   + T +   +          +E+DNS + +QRTSVFDRIKP TTR SVFQR+SM T  EE+QC  ST T+ SAF+RLS+S S
Subjt:  LNETFSKTF---HKKEKENLATSYCIDV----------EEIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSM-TATEEHQCSVSTSTRPSAFQRLSVSIS

Query:  KKSLFSTSV-----LKKDGQLGKTSFLQVQ
        KK   ST       +K D Q  +  +L+ +
Subjt:  KKSLFSTSV-----LKKDGQLGKTSFLQVQ

A0A5D3DBL7 Retrotransposon gag protein3.1e-1146.85Show/hide
Query:  MLNETFSKTF---HKKEKENLATSYCIDVEEIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMT-ATEEHQCSVSTSTRPSAFQRLSVSISKK-----SL
        +L E F ++F   H KE   +   + + + E+DNS + +Q T VFDRIKP TTR S+FQR+SM    EE+QC  STSTR SAF++LS+S SKK     SL
Subjt:  MLNETFSKTF---HKKEKENLATSYCIDVEEIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMT-ATEEHQCSVSTSTRPSAFQRLSVSISKK-----SL

Query:  FSTSVLKKDGQ
        F    +K + Q
Subjt:  FSTSVLKKDGQ

A0A5D3DEC3 Retrotransposon gag protein1.4e-1148.11Show/hide
Query:  LNETFSKTFHKKEKENLATSYCIDVE-------EIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSM-TATEEHQCSVSTSTRPSAFQRLSVSISKKSLFS
        L E F ++F +   + +     ++V+       E+DNS   +Q+TSVFD IKP TTR SVFQR+SM T  EE+QC +STSTR SAF+RLS+S SKK   S
Subjt:  LNETFSKTFHKKEKENLATSYCIDVE-------EIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSM-TATEEHQCSVSTSTRPSAFQRLSVSISKKSLFS

Query:  TSVLKK
        TS   +
Subjt:  TSVLKK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAATGAAACATTCTCCAAAACTTTCCATAAAAAGGAAAAAGAAAACCTTGCAACTTCCTACTGCATCGACGTAGAAGAAATTGACAATTCCAAAAAGGGTGAACA
AAGGACTTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTATGACCGCGACAGAAGAACATCAATGTTCGGTGTCGACCTCCA
CTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCATATCGAAGAAAAGCCTATTTTCAACATCTGTCTTAAAGAAAGATGGACAACTTGGAAAGACGTCATTCCTCCAA
GTTCAATGTCTCGCTAGCCTCAAGTTCGGTGTTTCACTCACCCTAAGTTCGTTGCTCCTGCTTCTTCAAGTTCGAAGGTTCTCACGCGCTTCGTTAGAGTTCCTTCTCTC
CAAGTTCGAAGGTTCTCACGCGCTTCGTTGGAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGGAGTTCCCTCTCCCCAAGTTCGAAGGTTCTCACGCG
CTTCGCTCCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCACTCCAGTTCCTTCTCTC
CAAGTTCGAAAGTTCTTACGCATTTCGCTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGTTCGCTGCAGTTCCTTCTCTCAAAGTTCGAGGGTCCTTACACTG
TACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTATTCGTTGTACGCTGCTGCTTTGTTCCTTCTCCAAGTTCGAAGGTTCTTAGTTGTTCGCATGGCGTTGCTTA
GCTGGTCATTCTCCAAGTTCGAAGGTTCTGACGCTACACTGCTTCCTTCACCAAGTTTGAAGGTTCTCACGCTGCGCTGTTTTGCTCCAGTTCCTTCTCTCCAAGTTCGA
AGGTTCTCACGCGTTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCCAATTCCTTGTCTCCAAGTTCGAAGGTTCTCACGCGTTTGCTGCA
GTTCCTTCACTTCAAGTTTGAAGGTTCTCACGTGCTTCGCTGGAGCTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCACTGCAGTTCCTTCTCTCCAAGTTCGAA
GGTTCTCATGCGCTTCGCAGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGTGCTTCGCTCCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGTTTTGCTGCA
GTTCCTTCACCAAGTTTGAAGGTTCTCACGCTGCGTTGTTTTGCTCCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCATGCGTTTCGCTGCAGTTCCTTCTCCCCAAGTT
CGAAGGTTCTCACGCGCTTCGCTCCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTGTTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTGCTTCAC
TGGAGCTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCAGCAGTTCCTTCTCCCCAAGTT
CGAAGGTTCTCACACGCTTCGCTCCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCTGCGCTA
TTGCGCTGCTTCATTCTCCAAGTTGAAAGTTCGCACGGTGTGCTGCTGTGCGCTGCTCCCTTCTCTCACCAAAGTTCAAGGGTTCTCATACTGCGCTGCTACGTTGCTTC
CTTCTCCAAGTTCGAAAGTTCACCCGCTGTATGCTGCTTCGCTGCTAGTTCTTCTCCAAGTTCGAAGGTTCGCACGTTGTACGCTGCTTCGCTGTTGTTCCCTCTTCAAG
TTTGAAGGTTCACGTTCTCATGCTACGCTGCTTTGCTGTTCCTTCTCCAAGTTTGAAGGTTCTGCTTTGCTGAAAGACGTGGCAGCAGTAATGGAGCCCAAGTGGGAATG
A
mRNA sequenceShow/hide mRNA sequence
ATGTTGAATGAAACATTCTCCAAAACTTTCCATAAAAAGGAAAAAGAAAACCTTGCAACTTCCTACTGCATCGACGTAGAAGAAATTGACAATTCCAAAAAGGGTGAACA
AAGGACTTCCGTCTTCGATCGCATCAAGCCTCCAACTACTCGTCCTTCGGTATTCCAGAGAATGAGTATGACCGCGACAGAAGAACATCAATGTTCGGTGTCGACCTCCA
CTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCATATCGAAGAAAAGCCTATTTTCAACATCTGTCTTAAAGAAAGATGGACAACTTGGAAAGACGTCATTCCTCCAA
GTTCAATGTCTCGCTAGCCTCAAGTTCGGTGTTTCACTCACCCTAAGTTCGTTGCTCCTGCTTCTTCAAGTTCGAAGGTTCTCACGCGCTTCGTTAGAGTTCCTTCTCTC
CAAGTTCGAAGGTTCTCACGCGCTTCGTTGGAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGGAGTTCCCTCTCCCCAAGTTCGAAGGTTCTCACGCG
CTTCGCTCCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCACTCCAGTTCCTTCTCTC
CAAGTTCGAAAGTTCTTACGCATTTCGCTGGAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGTTCGCTGCAGTTCCTTCTCTCAAAGTTCGAGGGTCCTTACACTG
TACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTATTCGTTGTACGCTGCTGCTTTGTTCCTTCTCCAAGTTCGAAGGTTCTTAGTTGTTCGCATGGCGTTGCTTA
GCTGGTCATTCTCCAAGTTCGAAGGTTCTGACGCTACACTGCTTCCTTCACCAAGTTTGAAGGTTCTCACGCTGCGCTGTTTTGCTCCAGTTCCTTCTCTCCAAGTTCGA
AGGTTCTCACGCGTTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCCAATTCCTTGTCTCCAAGTTCGAAGGTTCTCACGCGTTTGCTGCA
GTTCCTTCACTTCAAGTTTGAAGGTTCTCACGTGCTTCGCTGGAGCTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCACTGCAGTTCCTTCTCTCCAAGTTCGAA
GGTTCTCATGCGCTTCGCAGCAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCACGTGCTTCGCTCCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGTTTTGCTGCA
GTTCCTTCACCAAGTTTGAAGGTTCTCACGCTGCGTTGTTTTGCTCCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCATGCGTTTCGCTGCAGTTCCTTCTCCCCAAGTT
CGAAGGTTCTCACGCGCTTCGCTCCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTGTTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGTGCTTCAC
TGGAGCTCCTTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCAGCAGTTCCTTCTCCCCAAGTT
CGAAGGTTCTCACACGCTTCGCTCCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCGTTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGGTTCTCACGCTGCGCTA
TTGCGCTGCTTCATTCTCCAAGTTGAAAGTTCGCACGGTGTGCTGCTGTGCGCTGCTCCCTTCTCTCACCAAAGTTCAAGGGTTCTCATACTGCGCTGCTACGTTGCTTC
CTTCTCCAAGTTCGAAAGTTCACCCGCTGTATGCTGCTTCGCTGCTAGTTCTTCTCCAAGTTCGAAGGTTCGCACGTTGTACGCTGCTTCGCTGTTGTTCCCTCTTCAAG
TTTGAAGGTTCACGTTCTCATGCTACGCTGCTTTGCTGTTCCTTCTCCAAGTTTGAAGGTTCTGCTTTGCTGAAAGACGTGGCAGCAGTAATGGAGCCCAAGTGGGAATG
A
Protein sequenceShow/hide protein sequence
MLNETFSKTFHKKEKENLATSYCIDVEEIDNSKKGEQRTSVFDRIKPPTTRPSVFQRMSMTATEEHQCSVSTSTRPSAFQRLSVSISKKSLFSTSVLKKDGQLGKTSFLQ
VQCLASLKFGVSLTLSSLLLLLQVRRFSRASLEFLLSKFEGSHALRWSSFSPSSKVLTRFVGVPSPQVRRFSRASLQFLLSKFEGSHAFRCSSFSPSSKVLTRFTPVPSL
QVRKFLRISLEFLLPKFEGSHAFAAVPSLKVRGSLHCTLLRCSFSKFEGYSLYAAALFLLQVRRFLVVRMALLSWSFSKFEGSDATLLPSPSLKVLTLRCFAPVPSLQVR
RFSRVSLQFLLPKFEGSHALRSNSLSPSSKVLTRLLQFLHFKFEGSHVLRWSSFSPSSKVLTRFTAVPSLQVRRFSCASQQFLLPKFEGSHVLRSSSFSPSSKVLTRFAA
VPSPSLKVLTLRCFAPVPSLQVRRFSCVSLQFLLPKFEGSHALRSSSFSPSSKVLTCFAAVPSLQVRRFSRASLELLLPKFEGSHALRCSSFSPSSKVLMRFAAVPSPQV
RRFSHASLQFLLSKFEGSHAFRCSSFSPSSKVLTLRYCAASFSKLKVRTVCCCALLPSLTKVQGFSYCAATLLPSPSSKVHPLYAASLLVLLQVRRFARCTLLRCCSLFK
FEGSRSHATLLCCSFSKFEGSALLKDVAAVMEPKWE