; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg004537 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004537
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold9:10286198..10288176
RNA-Seq ExpressionSpg004537
SyntenySpg004537
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022142767.1 uncharacterized protein LOC111012805 [Momordica charantia]6.8e-2840.45Show/hide
Query:  MSAEELLKSKRSGREHNRHSSVDQDRKKNKRQRTDDGGRG-RAHPFGKFEKYTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYCLFHRDHGHS
        MSA E   SKR           ++   K +  R +   R  +  P  KFEKYTST VP EQVLMEI+N  LLK+PERM ++  +R K +YCLFH DHGH+
Subjt:  MSAEELLKSKRSGREHNRHSSVDQDRKKNKRQRTDDGGRG-RAHPFGKFEKYTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYCLFHRDHGHS

Query:  TRNCLQLKDEIEALIQNGYLKEFVAETGA----EADQRWPRQRRT----------------------PTRDQNHLWRTSWRRHTPPLEFTEAEATSIHQP
        T++C  LK+E+E LI  GYLKE+V E  A    E+D+   R+ RT                       +R+QN ++          +EF+E EAT +  P
Subjt:  TRNCLQLKDEIEALIQNGYLKEFVAETGA----EADQRWPRQRRT----------------------PTRDQNHLWRTSWRRHTPPLEFTEAEATSIHQP

Query:  HNDALVVTLMVANNAVTKMI
        HNDALV+TL +AN  V +++
Subjt:  HNDALVVTLMVANNAVTKMI

XP_022155873.1 uncharacterized protein LOC111022886 [Momordica charantia]6.4e-2636.44Show/hide
Query:  KYTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYCLFHRDHGHSTRNCLQLKDEIEALIQNGYLKEFVAETGAEADQRWPRQRRTPTRDQNHLW
        K T T V  EQVLMEI++  LLK+PERMK+   +R K QY LFHRDHGH+T++C  LK+E+E LI++GYLKE+V +   +A Q       +P R+     
Subjt:  KYTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYCLFHRDHGHSTRNCLQLKDEIEALIQNGYLKEFVAETGAEADQRWPRQRRTPTRDQNHLW

Query:  RTSWRRHTPPLEFTEAEATSIHQPHNDALVVTLMVAN---------------------------------------------------------------
        RT        LEF+E EAT +  PHNDALV+TL +AN                                                               
Subjt:  RTSWRRHTPPLEFTEAEATSIHQPHNDALVVTLMVAN---------------------------------------------------------------

Query:  NAVTKMINFLVVDCMSTYNAILGNPTLHEVKTTEST
         ++ KM++FLVV   S+YN ILG P +H +K   ST
Subjt:  NAVTKMINFLVVDCMSTYNAILGNPTLHEVKTTEST

XP_022156748.1 uncharacterized protein LOC111023587 [Momordica charantia]7.5e-2735.63Show/hide
Query:  YTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYCLFHRDHGHSTRNCLQLKDEIEALIQNGYLKEFVAETGAEADQRWPRQRRTPTRDQNHLWR
        YT T +P EQVLMEI++  LLK+PERMK+   +R K +YCLFHRDH H+T++C  LK+E+E LI+ GYLKE       +AD R  R      R+QN ++ 
Subjt:  YTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYCLFHRDHGHSTRNCLQLKDEIEALIQNGYLKEFVAETGAEADQRWPRQRRTPTRDQNHLWR

Query:  TSWRRHTPPLEFTEAEATSIHQPHNDALVVTLMVAN---------------------------------------------------------------N
                 +EF+E EAT +   HNDALV+TL +AN                                                                
Subjt:  TSWRRHTPPLEFTEAEATSIHQPHNDALVVTLMVAN---------------------------------------------------------------N

Query:  AVTKMINFLVVDCMSTYNAILGNPTLHEVKTTESTSPHPNLRSCEPG
         VTKM++FLVV+  S+YN ILG  T+H +K   ST  H +++   PG
Subjt:  AVTKMINFLVVDCMSTYNAILGNPTLHEVKTTESTSPHPNLRSCEPG

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]2.3e-2840.17Show/hide
Query:  MSAEELLKSKRSGREHNRHSSVDQDRKKNKRQRTDDGGRG----------RAHPFGKFEKYTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYC
        MSA E   SKR           D  R   KR+R+ D  +G          +  P  KFEKYT T VP EQVLMEI++  LLK+PERMK++  +R K +YC
Subjt:  MSAEELLKSKRSGREHNRHSSVDQDRKKNKRQRTDDGGRG----------RAHPFGKFEKYTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYC

Query:  LFHRDHGHSTRNCLQLKDEIEALIQNGYLKEFVAETGA----EADQRWPRQRRT----------------------PTRDQNHLWRTSWRRHTPPLEFTE
        LFHRDHGH+T++C  LK+E+E LI+ GYLKE+V E  A    E+D+   R+ RT                       +R+QN ++          +EF+E
Subjt:  LFHRDHGHSTRNCLQLKDEIEALIQNGYLKEFVAETGA----EADQRWPRQRRT----------------------PTRDQNHLWRTSWRRHTPPLEFTE

Query:  AEATSIHQPHNDALVVTLMVANNAVTKMI
         EAT +  PHNDALV+ L +AN  V +++
Subjt:  AEATSIHQPHNDALVVTLMVANNAVTKMI

XP_022159368.1 uncharacterized protein LOC111025785 [Momordica charantia]4.4e-2739.3Show/hide
Query:  MSAEELLKSKRSGREHNRHSSVDQDRKKNKRQRTDDGGRG----------RAHPFGKFEKYTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYC
        MSA E   SKR           D  R   KR+R+ D  +G          +  P  KFEKYT T VP EQVLMEI++  LLK+PERMK    +R K +YC
Subjt:  MSAEELLKSKRSGREHNRHSSVDQDRKKNKRQRTDDGGRG----------RAHPFGKFEKYTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYC

Query:  LFHRDHGHSTRNCLQLKDEIEALIQNGYLKEFVAETGA----EADQRWPRQRRT----------------------PTRDQNHLWRTSWRRHTPPLEFTE
        LFHRDH H+T++   LK+E+E LI+ GYL+E+V E  A    E+++   R+ RT                      P+R+QN ++       +  +EF+E
Subjt:  LFHRDHGHSTRNCLQLKDEIEALIQNGYLKEFVAETGA----EADQRWPRQRRT----------------------PTRDQNHLWRTSWRRHTPPLEFTE

Query:  AEATSIHQPHNDALVVTLMVANNAVTKMI
         EAT +  PHNDALV+TL +AN  V +++
Subjt:  AEATSIHQPHNDALVVTLMVANNAVTKMI

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128053.3e-2840.45Show/hide
Query:  MSAEELLKSKRSGREHNRHSSVDQDRKKNKRQRTDDGGRG-RAHPFGKFEKYTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYCLFHRDHGHS
        MSA E   SKR           ++   K +  R +   R  +  P  KFEKYTST VP EQVLMEI+N  LLK+PERM ++  +R K +YCLFH DHGH+
Subjt:  MSAEELLKSKRSGREHNRHSSVDQDRKKNKRQRTDDGGRG-RAHPFGKFEKYTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYCLFHRDHGHS

Query:  TRNCLQLKDEIEALIQNGYLKEFVAETGA----EADQRWPRQRRT----------------------PTRDQNHLWRTSWRRHTPPLEFTEAEATSIHQP
        T++C  LK+E+E LI  GYLKE+V E  A    E+D+   R+ RT                       +R+QN ++          +EF+E EAT +  P
Subjt:  TRNCLQLKDEIEALIQNGYLKEFVAETGA----EADQRWPRQRRT----------------------PTRDQNHLWRTSWRRHTPPLEFTEAEATSIHQP

Query:  HNDALVVTLMVANNAVTKMI
        HNDALV+TL +AN  V +++
Subjt:  HNDALVVTLMVANNAVTKMI

A0A6J1DP33 uncharacterized protein LOC1110228863.1e-2636.44Show/hide
Query:  KYTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYCLFHRDHGHSTRNCLQLKDEIEALIQNGYLKEFVAETGAEADQRWPRQRRTPTRDQNHLW
        K T T V  EQVLMEI++  LLK+PERMK+   +R K QY LFHRDHGH+T++C  LK+E+E LI++GYLKE+V +   +A Q       +P R+     
Subjt:  KYTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYCLFHRDHGHSTRNCLQLKDEIEALIQNGYLKEFVAETGAEADQRWPRQRRTPTRDQNHLW

Query:  RTSWRRHTPPLEFTEAEATSIHQPHNDALVVTLMVAN---------------------------------------------------------------
        RT        LEF+E EAT +  PHNDALV+TL +AN                                                               
Subjt:  RTSWRRHTPPLEFTEAEATSIHQPHNDALVVTLMVAN---------------------------------------------------------------

Query:  NAVTKMINFLVVDCMSTYNAILGNPTLHEVKTTEST
         ++ KM++FLVV   S+YN ILG P +H +K   ST
Subjt:  NAVTKMINFLVVDCMSTYNAILGNPTLHEVKTTEST

A0A6J1DRG9 uncharacterized protein LOC1110235873.7e-2735.63Show/hide
Query:  YTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYCLFHRDHGHSTRNCLQLKDEIEALIQNGYLKEFVAETGAEADQRWPRQRRTPTRDQNHLWR
        YT T +P EQVLMEI++  LLK+PERMK+   +R K +YCLFHRDH H+T++C  LK+E+E LI+ GYLKE       +AD R  R      R+QN ++ 
Subjt:  YTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYCLFHRDHGHSTRNCLQLKDEIEALIQNGYLKEFVAETGAEADQRWPRQRRTPTRDQNHLWR

Query:  TSWRRHTPPLEFTEAEATSIHQPHNDALVVTLMVAN---------------------------------------------------------------N
                 +EF+E EAT +   HNDALV+TL +AN                                                                
Subjt:  TSWRRHTPPLEFTEAEATSIHQPHNDALVVTLMVAN---------------------------------------------------------------N

Query:  AVTKMINFLVVDCMSTYNAILGNPTLHEVKTTESTSPHPNLRSCEPG
         VTKM++FLVV+  S+YN ILG  T+H +K   ST  H +++   PG
Subjt:  AVTKMINFLVVDCMSTYNAILGNPTLHEVKTTESTSPHPNLRSCEPG

A0A6J1DWY0 uncharacterized protein LOC1110252931.1e-2840.17Show/hide
Query:  MSAEELLKSKRSGREHNRHSSVDQDRKKNKRQRTDDGGRG----------RAHPFGKFEKYTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYC
        MSA E   SKR           D  R   KR+R+ D  +G          +  P  KFEKYT T VP EQVLMEI++  LLK+PERMK++  +R K +YC
Subjt:  MSAEELLKSKRSGREHNRHSSVDQDRKKNKRQRTDDGGRG----------RAHPFGKFEKYTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYC

Query:  LFHRDHGHSTRNCLQLKDEIEALIQNGYLKEFVAETGA----EADQRWPRQRRT----------------------PTRDQNHLWRTSWRRHTPPLEFTE
        LFHRDHGH+T++C  LK+E+E LI+ GYLKE+V E  A    E+D+   R+ RT                       +R+QN ++          +EF+E
Subjt:  LFHRDHGHSTRNCLQLKDEIEALIQNGYLKEFVAETGA----EADQRWPRQRRT----------------------PTRDQNHLWRTSWRRHTPPLEFTE

Query:  AEATSIHQPHNDALVVTLMVANNAVTKMI
         EAT +  PHNDALV+ L +AN  V +++
Subjt:  AEATSIHQPHNDALVVTLMVANNAVTKMI

A0A6J1DYL6 uncharacterized protein LOC1110257852.1e-2739.3Show/hide
Query:  MSAEELLKSKRSGREHNRHSSVDQDRKKNKRQRTDDGGRG----------RAHPFGKFEKYTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYC
        MSA E   SKR           D  R   KR+R+ D  +G          +  P  KFEKYT T VP EQVLMEI++  LLK+PERMK    +R K +YC
Subjt:  MSAEELLKSKRSGREHNRHSSVDQDRKKNKRQRTDDGGRG----------RAHPFGKFEKYTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYC

Query:  LFHRDHGHSTRNCLQLKDEIEALIQNGYLKEFVAETGA----EADQRWPRQRRT----------------------PTRDQNHLWRTSWRRHTPPLEFTE
        LFHRDH H+T++   LK+E+E LI+ GYL+E+V E  A    E+++   R+ RT                      P+R+QN ++       +  +EF+E
Subjt:  LFHRDHGHSTRNCLQLKDEIEALIQNGYLKEFVAETGA----EADQRWPRQRRT----------------------PTRDQNHLWRTSWRRHTPPLEFTE

Query:  AEATSIHQPHNDALVVTLMVANNAVTKMI
         EAT +  PHNDALV+TL +AN  V +++
Subjt:  AEATSIHQPHNDALVVTLMVANNAVTKMI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGCAGAGGAATTACTGAAATCAAAGAGGTCAGGACGAGAGCACAATAGACATTCTTCAGTCGATCAGGACAGAAAGAAAAATAAGAGACAACGGACAGACGATGG
TGGCCGAGGCCGAGCACATCCGTTCGGTAAGTTTGAGAAATATACGTCAACTGTTGTTCCACAAGAGCAAGTTCTGATGGAGATCCGGAATACGGGACTCCTTAAATTCC
CGGAGAGGATGAAGTCGAATCTCGATAGAAGAGACAAGAGTCAGTATTGCCTTTTCCACCGGGACCATGGACATTCAACTAGGAATTGTCTTCAGCTGAAGGATGAAATT
GAGGCACTGATCCAGAATGGGTATCTGAAGGAGTTCGTCGCCGAAACTGGGGCTGAGGCTGACCAAAGATGGCCGAGACAAAGAAGAACCCCCACGAGAGATCAGAACCA
TCTTTGGAGGACTAGTTGGAGGAGGCACACCCCCCCTTTGGAGTTCACTGAGGCTGAGGCAACAAGCATTCATCAGCCACATAATGATGCTCTGGTGGTCACTCTAATGG
TAGCCAATAATGCAGTGACAAAGATGATAAACTTCCTAGTTGTGGATTGCATGTCAACCTACAATGCAATCCTAGGAAATCCAACCTTGCATGAAGTGAAGACTACCGAG
TCTACCTCGCCTCATCCAAACTTGAGATCATGTGAGCCTGGACCACGGGTCTACCTCACCTCATCTGGCTTGAGCACCTTTACATTACGCGAGCCTGGACTACCGAGTCT
ACCTCGCCTCATCCAGATTCGAGATTATGTGAGCCTGGACCACCGAGTCTACCTCACCTCATCTGGCTTGAGCCCATCACCTCTCGCGAGCCTGGACTACCGAGTCTACC
TCGCCTCATCCAGACTTGAGATTATGTCTACTTGGCCTCGTCCAGACTTGAGATCATGTGAACCTGAACCACGAGTCTACCTTACCTCATCTGGCTTGAGTCCGTCACGC
AAGCTTGGACTACCAAGTCTACCTTGCCCCATCCAGATATGGAATTGCATGAGCCTGGACTGCCAAGTCTACCTCACCTCATCTGGCTTGAGCCCAAACACTTCATCTGG
GTCAAGCTCACCTGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCGCAGAGGAATTACTGAAATCAAAGAGGTCAGGACGAGAGCACAATAGACATTCTTCAGTCGATCAGGACAGAAAGAAAAATAAGAGACAACGGACAGACGATGG
TGGCCGAGGCCGAGCACATCCGTTCGGTAAGTTTGAGAAATATACGTCAACTGTTGTTCCACAAGAGCAAGTTCTGATGGAGATCCGGAATACGGGACTCCTTAAATTCC
CGGAGAGGATGAAGTCGAATCTCGATAGAAGAGACAAGAGTCAGTATTGCCTTTTCCACCGGGACCATGGACATTCAACTAGGAATTGTCTTCAGCTGAAGGATGAAATT
GAGGCACTGATCCAGAATGGGTATCTGAAGGAGTTCGTCGCCGAAACTGGGGCTGAGGCTGACCAAAGATGGCCGAGACAAAGAAGAACCCCCACGAGAGATCAGAACCA
TCTTTGGAGGACTAGTTGGAGGAGGCACACCCCCCCTTTGGAGTTCACTGAGGCTGAGGCAACAAGCATTCATCAGCCACATAATGATGCTCTGGTGGTCACTCTAATGG
TAGCCAATAATGCAGTGACAAAGATGATAAACTTCCTAGTTGTGGATTGCATGTCAACCTACAATGCAATCCTAGGAAATCCAACCTTGCATGAAGTGAAGACTACCGAG
TCTACCTCGCCTCATCCAAACTTGAGATCATGTGAGCCTGGACCACGGGTCTACCTCACCTCATCTGGCTTGAGCACCTTTACATTACGCGAGCCTGGACTACCGAGTCT
ACCTCGCCTCATCCAGATTCGAGATTATGTGAGCCTGGACCACCGAGTCTACCTCACCTCATCTGGCTTGAGCCCATCACCTCTCGCGAGCCTGGACTACCGAGTCTACC
TCGCCTCATCCAGACTTGAGATTATGTCTACTTGGCCTCGTCCAGACTTGAGATCATGTGAACCTGAACCACGAGTCTACCTTACCTCATCTGGCTTGAGTCCGTCACGC
AAGCTTGGACTACCAAGTCTACCTTGCCCCATCCAGATATGGAATTGCATGAGCCTGGACTGCCAAGTCTACCTCACCTCATCTGGCTTGAGCCCAAACACTTCATCTGG
GTCAAGCTCACCTGGCTGA
Protein sequenceShow/hide protein sequence
MSAEELLKSKRSGREHNRHSSVDQDRKKNKRQRTDDGGRGRAHPFGKFEKYTSTVVPQEQVLMEIRNTGLLKFPERMKSNLDRRDKSQYCLFHRDHGHSTRNCLQLKDEI
EALIQNGYLKEFVAETGAEADQRWPRQRRTPTRDQNHLWRTSWRRHTPPLEFTEAEATSIHQPHNDALVVTLMVANNAVTKMINFLVVDCMSTYNAILGNPTLHEVKTTE
STSPHPNLRSCEPGPRVYLTSSGLSTFTLREPGLPSLPRLIQIRDYVSLDHRVYLTSSGLSPSPLASLDYRVYLASSRLEIMSTWPRPDLRSCEPEPRVYLTSSGLSPSR
KLGLPSLPCPIQIWNCMSLDCQVYLTSSGLSPNTSSGSSSPG