CuGenDBv2

Gene ID	Spg004546
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA primase
Genome location	scaffold9:9455803..9459706
RNA-Seq Expression	Spg004546
Synteny	Spg004546
Gene Ontology terms	GO:0006269 - DNA replication, synthesis of RNA primer (biological process) GO:0006865 - amino acid transport (biological process) GO:0009734 - auxin-activated signaling pathway (biological process) GO:0055085 - transmembrane transport (biological process) GO:0005658 - alpha DNA polymerase:primase complex (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003896 - DNA primase activity (molecular function) GO:0015293 - symporter activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR002755 - DNA primase, small subunit IPR014052 - DNA primase, small subunit, eukaryotic/archaeal

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039338.1 DNA primase, small subunit [Cucumis melo var. makuwa]

9.6e-39

87.78

Show/hide

Query:  KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGDMIVDGETGSKLCR
        KAQGMRRHVEEIVFSFTYPRLD EVTKHMNHLLKAPFCVHPKTGR+CVPI+P+ CDEFDPTTVPTVAQLLEELNA DM VD ETG K+ R
Subjt:  KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGDMIVDGETGSKLCR

KAG6592333.1 DNA primase small subunit, partial [Cucurbita argyrosperma subsp. sororia]

2.4e-37

90.48

Show/hide

Query:  KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGDMIVDGET
        K+QGMRRHVEEIVFSFTYPRLD EVTKHMNHLLKAPFCVHPKTGR+CVPI+P+RCDEFDPTTVPTVAQLLEELNA DM VD ET
Subjt:  KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGDMIVDGET

KAG7025155.1 DNA primase small subunit [Cucurbita argyrosperma subsp. argyrosperma]

2.4e-37

90.48

Show/hide

Query:  KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGDMIVDGET
        K+QGMRRHVEEIVFSFTYPRLD EVTKHMNHLLKAPFCVHPKTGR+CVPI+P+RCDEFDPTTVPTVAQLLEELNA DM VD ET
Subjt:  KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGDMIVDGET

XP_022973496.1 DNA primase small subunit [Cucurbita maxima]

2.4e-37

90.48

Show/hide

Query:  KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGDMIVDGET
        K+QGMRRHVEEIVFSFTYPRLD EVTKHMNHLLKAPFCVHPKTGR+CVPI+P+RCDEFDPTTVPTVAQLLEELNA DM VD ET
Subjt:  KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGDMIVDGET

XP_023535939.1 DNA primase small subunit [Cucurbita pepo subsp. pepo]

2.4e-37

90.48

Show/hide

Query:  KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGDMIVDGET
        K+QGMRRHVEEIVFSFTYPRLD EVTKHMNHLLKAPFCVHPKTGR+CVPI+P+RCDEFDPTTVPTVAQLLEELNA DM VD ET
Subjt:  KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGDMIVDGET

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KUP7 DNA primase

1.5e-37

91.57

Show/hide

Query:  KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGDMIVDGE
        KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGR+CVPI+P+ CDEFDPTTVPTVAQLLEELNA DM VD E
Subjt:  KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGDMIVDGE

A0A5A7T8Y3 DNA primase

4.6e-39

87.78

Show/hide

Query:  KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGDMIVDGETGSKLCR
        KAQGMRRHVEEIVFSFTYPRLD EVTKHMNHLLKAPFCVHPKTGR+CVPI+P+ CDEFDPTTVPTVAQLLEELNA DM VD ETG K+ R
Subjt:  KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGDMIVDGETGSKLCR

A0A6J1CKZ3 DNA primase

4.4e-37

90.36

Show/hide

Query:  KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGDMIVDGE
        KAQGMRRHVEEIVFSFTYPRLD EVTKH NHLLKAPFCVHPKTGR+CVPINP+ CDEFDPTTVPT+AQLLEELNA DM VDGE
Subjt:  KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGDMIVDGE

A0A6J1EEZ9 DNA primase

5.7e-37

89.29

Show/hide

Query:  KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGDMIVDGET
        K+ GMRRHVEEIVFSFTYPRLD EVTKHMNHLLKAPFCVHPKTGR+CVPI+P+RCDEFDPTTVPTVAQLLEELNA DM VD ET
Subjt:  KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGDMIVDGET

A0A6J1I8T4 DNA primase

1.1e-37

90.48

Show/hide

Query:  KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGDMIVDGET
        K+QGMRRHVEEIVFSFTYPRLD EVTKHMNHLLKAPFCVHPKTGR+CVPI+P+RCDEFDPTTVPTVAQLLEELNA DM VD ET
Subjt:  KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGDMIVDGET

SwissProt top hits

e value

%identity

Alignment

O14215 DNA primase small subunit

2.0e-18

61.54

Show/hide

Query:  EEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELN
        ++IV ++ YPRLD EV++H+NHLLK+PFCVHP T RVCVPI+ +R D F+P  VPTV  LL+EL+
Subjt:  EEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELN

P49642 DNA primase small subunit

1.2e-15

55.38

Show/hide

Query:  EIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNA
        EI+  + +PRLD  V+K +NHLLK+PF VHPKTGR+ VPI+ ++ D+FDP TVPT++ +  EL+A
Subjt:  EIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNA

Q24317 DNA primase small subunit

3.9e-19

Show/hide

Query:  ESVPKFERS-DTNLMEPKAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGD
        ES  K+  S  T+     ++ ++  V EI     YPRLD  VT+  NHLLKAPFC+HP TG+VCVP +     +FDPTTVPT+ QLL E+NA D
Subjt:  ESVPKFERS-DTNLMEPKAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELNAGD

Q25998 DNA primase small subunit

6.3e-17

55.71

Show/hide

Query:  MRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELN
        M   V+EIVF FTYPRLD  V+K +NHLLK+PFC+H  TGRVCVP++ K  + F+P +VPT+  L E+ +
Subjt:  MRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELN

Q7KQM1 DNA primase small subunit

6.3e-17

55.71

Show/hide

Query:  MRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELN
        M   V+EIVF FTYPRLD  V+K +NHLLK+PFC+H  TGRVCVP++ K  + F+P +VPT+  L E+ +
Subjt:  MRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEELN

Arabidopsis top hits

e value

%identity

Alignment

AT5G41880.1 DNA primases;DNA primases

6.0e-31

57.41

Show/hide

Query:  SRDFLGRHGESVPKFERSDTNLMEP--KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEEL
        +R  L     S+ ++E+    L     KA  +R  VEEIVF+FTYPR+D EV+K MNHLLKAPFCVHPKTGRVCVPI+P  CDEFDP  VPT++QL+EE+
Subjt:  SRDFLGRHGESVPKFERSDTNLMEP--KAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQLLEEL

Query:  NAGDMIVD
        N+G + +D
Subjt:  NAGDMIVD

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGTAGATTCCGTCTCTTTATCAACCAAAGATGGGTCTCCACTTACGTTAGTCGAGACTTTCTTGGTCGTCATGGTGAAAGCGTCCCAAAATTCGAGCGCTCTGATAC
CAATTTGATGGAGCCGAAAGCACAAGGAATGCGTAGGCATGTTGAAGAGATTGTTTTCTCTTTTACCTACCCTAGGCTTGATTCGGAGGTTACTAAACACATGAACCATC
TGCTAAAAGCACCATTCTGTGTTCATCCCAAAACAGGTCGTGTTTGTGTCCCTATCAACCCTAAACGATGTGATGAGTTTGATCCAACTACTGTACCAACTGTTGCCCAG
CTTCTAGAAGAACTTAATGCAGGGGATATGATAGTAGATGGTGAGACTGGCTCGAAATTGTGCAGGAGTTACTATCACAGTCTGTTAGGGCTAGGCTACTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MGRFRLFINQRWVSTYVSRDFLGRHGESVPKFERSDTNLMEPKAQGMRRHVEEIVFSFTYPRLDSEVTKHMNHLLKAPFCVHPKTGRVCVPINPKRCDEFDPTTVPTVAQ
LLEELNAGDMIVDGETGSKLCRSYYHSLLGLGY

Spg004546 (gene) of Sponge gourd (cylindrica) v1 genome