; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg004558 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004558
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold9:12159733..12163088
RNA-Seq ExpressionSpg004558
SyntenySpg004558
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]2.7e-2242.04Show/hide
Query:  SQEKYDSIKDENEGWTFVVRHKKQKQSYARKESRLFRDSKRKVKSQRKKEKKKSRRSKPVVEESEDFFCHPQPITLAEYFPRSFLDDNQEEAFETVTCHI
        SQEK   I++++EGWT V R KK+K +  +KE R +R+ ++  K+Q+ K+KKK+R+ K + EE +DF    + +TLA++FP  FL D+Q+E    V CH 
Subjt:  SQEKYDSIKDENEGWTFVVRHKKQKQSYARKESRLFRDSKRKVKSQRKKEKKKSRRSKPVVEESEDFFCHPQPITLAEYFPRSFLDDNQEEAFETVTCHI

Query:  VDVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIESDGLGYKSP
        ++ +E++++P  S        DLS F++ DLLSLPQE K +LINAL+ S      +P
Subjt:  VDVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIESDGLGYKSP

KAA0039557.1 uncharacterized protein E6C27_scaffold744G00270 [Cucumis melo var. makuwa]7.8e-2249.62Show/hide
Query:  GLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNETEEENAQTTNNSTRPSVFRRLSMPIGEEDSTFS
        GLGYKSPEP+RI R GK KV D+NHITV+EVD  +E E   QRTS F R  P VAR  VF+RLS+ E E ++ Q+T+N  R SVF+RL++   EE     
Subjt:  GLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNETEEENAQTTNNSTRPSVFRRLSMPIGEEDSTFS

Query:  NPDVTRPSAFQRLNMPIGEEENTLSTPNVTR
            T+PSAF+RL++   +   T   P + R
Subjt:  NPDVTRPSAFQRLNMPIGEEENTLSTPNVTR

KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-2352.17Show/hide
Query:  GLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNETEEENAQTTNNSTRPSVFRRLSMPIGEEDSTFS
        GLGYKSPEP+RI R GK KV D NHITV+EVD  KEKE   QRTS F R  P VAR  VF+RLS+ E E ++ Q+T+N  R S F+RL+M   +E     
Subjt:  GLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNETEEENAQTTNNSTRPSVFRRLSMPIGEEDSTFS

Query:  NPDVTRPSAFQRLNMPIGEEENTLSTPNVTRPSVFQRL
            TRPSAF+RL+M    ++  + TP   RP +F RL
Subjt:  NPDVTRPSAFQRLNMPIGEEENTLSTPNVTRPSVFQRL

KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-0834.23Show/hide
Query:  SQEKYDSIKDENEGWTFVVRHKKQKQSYARKESRLFRDSKRKVKSQRKKEKKKSRRSKPVVEESEDFFCHPQPITLAEYFPRSFLDDNQEEAFETVTCHI
        S+EK  SI++++EGW  V R KK+K +  +KESR +R+ +R  K+++ K+KKK+++ K                           D+N       V CH 
Subjt:  SQEKYDSIKDENEGWTFVVRHKKQKQSYARKESRLFRDSKRKVKSQRKKEKKKSRRSKPVVEESEDFFCHPQPITLAEYFPRSFLDDNQEEAFETVTCHI

Query:  VDVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIES
        ++  E++ +P  S        DLS F++ DLLSLPQ+ K +LINAL+ S
Subjt:  VDVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIES

KAA0042067.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.2e-2350.38Show/hide
Query:  GLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNETEEENAQTTNNSTRPSVFRRLSMPIGEEDSTFS
        GL YKSPEP+RI R GK KV D+NHITV+EVD  +EKE   QRTS F R  P VARA VF+RLS+ E E ++ Q+T+N  R S F+RL++   EE   + 
Subjt:  GLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNETEEENAQTTNNSTRPSVFRRLSMPIGEEDSTFS

Query:  NPDVTRPSAFQRLNMPIGEEENTLSTPNVTR
            T+PSAF+RL++   +   T   PN+ R
Subjt:  NPDVTRPSAFQRLNMPIGEEENTLSTPNVTR

KAA0055957.1 uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]2.1e-2249.62Show/hide
Query:  GLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNETEEENAQTTNNSTRPSVFRRLSMPIGEEDSTFS
        GLGYKSPEP+RI R GK KV D NHITV+EVD  +EKE  +QRTS F R  P VARA VF+RLS+ E + ++ Q+T+N  R S F+RL++   EE     
Subjt:  GLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNETEEENAQTTNNSTRPSVFRRLSMPIGEEDSTFS

Query:  NPDVTRPSAFQRLNMPIGEEENTLSTPNVTR
            T+PSAF+RL++   +   T   P + R
Subjt:  NPDVTRPSAFQRLNMPIGEEENTLSTPNVTR

TYK28162.1 uncharacterized protein E5676_scaffold289G00760 [Cucumis melo var. makuwa]1.2e-2243.56Show/hide
Query:  DLSSFSIKDLLSLPQEAKSVLINALI---ESDGLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNET
        D  S  I +   L    K +L    +      GLGYKSPEP+RI R GK KV D+NHITV+EVD  +EKE  +QRTS F R  P VARA VF+RLS+ E 
Subjt:  DLSSFSIKDLLSLPQEAKSVLINALI---ESDGLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNET

Query:  EEENAQTTNNSTRPSVFRRLSMPIGEEDSTFSNPDVTRPSAFQRLNMPIGEEENTLSTPNVTR
        E ++ Q+T+N  + S F+RL++   EE         T+PSAF+RL++   +   T   P + R
Subjt:  EEENAQTTNNSTRPSVFRRLSMPIGEEDSTFSNPDVTRPSAFQRLNMPIGEEENTLSTPNVTR

TrEMBL top hitse value%identityAlignment
A0A5A7TY01 Ty3-gypsy retrotransposon protein3.8e-2241.72Show/hide
Query:  MKGSQEKYDSIKDENEGWTFVVRHKKQKQSYARKESRLFRDSKRKVKSQRKKEKKKSRRSKPVVEESEDFFCHPQP---ITLAEYFPRSFLDDNQEEAFE
        ++ S  K  SI+++NEGW  V R  K+K +  +KES  +R+ +R+ K+Q+ K+KKK+R+ K V EE +DF   PQP   +T+A+ FP  FL D+Q+E  E
Subjt:  MKGSQEKYDSIKDENEGWTFVVRHKKQKQSYARKESRLFRDSKRKVKSQRKKEKKKSRRSKPVVEESEDFFCHPQP---ITLAEYFPRSFLDDNQEEAFE

Query:  TVTCHIVDVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIESDGLGYKSP
         +TCH ++  E++ +P+ S        +LS F++ DLLSLPQE K++LINAL+ S      +P
Subjt:  TVTCHIVDVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIESDGLGYKSP

A0A5D3BSG5 Uncharacterized protein1.3e-2242.04Show/hide
Query:  SQEKYDSIKDENEGWTFVVRHKKQKQSYARKESRLFRDSKRKVKSQRKKEKKKSRRSKPVVEESEDFFCHPQPITLAEYFPRSFLDDNQEEAFETVTCHI
        SQEK   I++++EGWT V R KK+K +  +KE R +R+ ++  K+Q+ K+KKK+R+ K + EE +DF    + +TLA++FP  FL D+Q+E    V CH 
Subjt:  SQEKYDSIKDENEGWTFVVRHKKQKQSYARKESRLFRDSKRKVKSQRKKEKKKSRRSKPVVEESEDFFCHPQPITLAEYFPRSFLDDNQEEAFETVTCHI

Query:  VDVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIESDGLGYKSP
        ++ +E++++P  S        DLS F++ DLLSLPQE K +LINAL+ S      +P
Subjt:  VDVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIESDGLGYKSP

A0A5D3BSG5 Uncharacterized protein3.8e-2249.62Show/hide
Query:  GLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNETEEENAQTTNNSTRPSVFRRLSMPIGEEDSTFS
        GLGYKSPEP+RI R GK KV D+NHITV+EVD  +E E   QRTS F R  P VAR  VF+RLS+ E E ++ Q+T+N  R SVF+RL++   EE     
Subjt:  GLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNETEEENAQTTNNSTRPSVFRRLSMPIGEEDSTFS

Query:  NPDVTRPSAFQRLNMPIGEEENTLSTPNVTR
            T+PSAF+RL++   +   T   P + R
Subjt:  NPDVTRPSAFQRLNMPIGEEENTLSTPNVTR

A0A5D3BSG5 Uncharacterized protein1.7e-2242.95Show/hide
Query:  QEKYDSIKDENEGWTFVVRHKKQKQSYARKESRLFRDSKRKVKSQRKKEKKKSRRSKPVVEESEDFFCHPQPITLAEYFPRSFLDDNQEEAFETVTCHIV
        QEK  SI+ ++EGWT V R KK+K +  +KE R +R+ +R  K+Q+ K+KKK+++ K + EE +DF    + +TLA +FP  FL D+Q+E  E V CH +
Subjt:  QEKYDSIKDENEGWTFVVRHKKQKQSYARKESRLFRDSKRKVKSQRKKEKKKSRRSKPVVEESEDFFCHPQPITLAEYFPRSFLDDNQEEAFETVTCHIV

Query:  DVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIESDGLGYKSP
        D +E++ +P  S        DL  F++ DLLSLPQE K++LINAL+ S      +P
Subjt:  DVVEDDDVPTSSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIESDGLGYKSP

A0A5D3DB95 RNase H domain-containing protein2.0e-2350.38Show/hide
Query:  GLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNETEEENAQTTNNSTRPSVFRRLSMPIGEEDSTFS
        GL YKSPEP+RI R GK KV D+NHITV+EVD  +EKE   QRTS F R  P VARA VF+RLS+ E E ++ Q+T+N  R S F+RL++   EE   + 
Subjt:  GLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNETEEENAQTTNNSTRPSVFRRLSMPIGEEDSTFS

Query:  NPDVTRPSAFQRLNMPIGEEENTLSTPNVTR
            T+PSAF+RL++   +   T   PN+ R
Subjt:  NPDVTRPSAFQRLNMPIGEEENTLSTPNVTR

A0A5D3DXC7 Reverse transcriptase domain-containing protein5.9e-2343.56Show/hide
Query:  DLSSFSIKDLLSLPQEAKSVLINALI---ESDGLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNET
        D  S  I +   L    K +L    +      GLGYKSPEP+RI R GK KV D+NHITV+EVD  +EKE  +QRTS F R  P VARA VF+RLS+ E 
Subjt:  DLSSFSIKDLLSLPQEAKSVLINALI---ESDGLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNET

Query:  EEENAQTTNNSTRPSVFRRLSMPIGEEDSTFSNPDVTRPSAFQRLNMPIGEEENTLSTPNVTR
        E ++ Q+T+N  + S F+RL++   EE         T+PSAF+RL++   +   T   P + R
Subjt:  EEENAQTTNNSTRPSVFRRLSMPIGEEDSTFSNPDVTRPSAFQRLNMPIGEEENTLSTPNVTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGGGATCCCAAGAAAAATATGATTCCATCAAAGATGAGAATGAAGGTTGGACCTTTGTTGTTCGTCACAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCG
CCTATTTCGAGACAGTAAAAGAAAGGTTAAATCTCAAAGGAAGAAGGAAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCATC
CACAACCCATAACTTTGGCAGAATACTTCCCAAGGAGCTTTCTCGATGATAATCAAGAAGAGGCATTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGAT
GATGTCCCTACTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGATTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTAA
TGCATTGATAGAGTCTGATGGACTTGGATATAAGTCACCTGAGCCAGTTCGCATAATAAGAGGAGGGAAGGCGAAAGTGGAAGACACAAATCATATAACAGTAGAGGAGG
TTGATGACTCAAAAGAAAAAGAGAGTGTTGACCAACGAACTTCTGTTTTTAGGCGCACGAGGCCACCAGTTGCTCGTGCTTTAGTGTTTCAGAGATTAAGTGTCAATGAA
ACGGAAGAAGAAAACGCACAAACTACCAATAACTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAAGAAGATAGTACATTTTCAAATCCGGATGT
CACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGAAGAGAATACACTTTCAACTCCGAATGTGACTCGACCATCAGTTTTTCAAAGGTTAAGTGTTA
CCACGAGAATGAAAAGATCACGAAGATGGTTCCTTGAAGGTCTTCAAACATGGAAAAAATCTCAGCCAAATATGGAAAATTTCAATTCTGGAAACTGCCTAGCGTCGCGA
TGCTGTGGACCTAGCGTCGCGACGCTAGGCCTTCAAGTAAGGAAACGATTCTGCGGATCTCGTAGCGTCGCGACGCTACCACTTCAACTGCGCGCCAATGCCTTTTTTCC
TTATTTGAGCAGTGTCCCGAAGCCTAGGTTGAAGGGTCTCGACGCTGTGATGTCTCCAAGGGCAGAATGGTCATTTTACGCTCCGGTTTCGCTCGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGGGATCCCAAGAAAAATATGATTCCATCAAAGATGAGAATGAAGGTTGGACCTTTGTTGTTCGTCACAAAAAGCAAAAGCAAAGTTACGCACGGAAAGAGTCCCG
CCTATTTCGAGACAGTAAAAGAAAGGTTAAATCTCAAAGGAAGAAGGAAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCCATC
CACAACCCATAACTTTGGCAGAATACTTCCCAAGGAGCTTTCTCGATGATAATCAAGAAGAGGCATTTGAAACTGTCACGTGTCACATTGTGGACGTGGTGGAAGATGAT
GATGTCCCTACTAGCTCCTCGGGAACGGTGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGATTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTATTAA
TGCATTGATAGAGTCTGATGGACTTGGATATAAGTCACCTGAGCCAGTTCGCATAATAAGAGGAGGGAAGGCGAAAGTGGAAGACACAAATCATATAACAGTAGAGGAGG
TTGATGACTCAAAAGAAAAAGAGAGTGTTGACCAACGAACTTCTGTTTTTAGGCGCACGAGGCCACCAGTTGCTCGTGCTTTAGTGTTTCAGAGATTAAGTGTCAATGAA
ACGGAAGAAGAAAACGCACAAACTACCAATAACTCCACTCGACCTTCAGTTTTTCGAAGGTTAAGTATGCCCATTGGGGAAGAAGATAGTACATTTTCAAATCCGGATGT
CACTCGACCTTCAGCTTTTCAAAGGTTAAATATGCCCATTGGGGAAGAAGAGAATACACTTTCAACTCCGAATGTGACTCGACCATCAGTTTTTCAAAGGTTAAGTGTTA
CCACGAGAATGAAAAGATCACGAAGATGGTTCCTTGAAGGTCTTCAAACATGGAAAAAATCTCAGCCAAATATGGAAAATTTCAATTCTGGAAACTGCCTAGCGTCGCGA
TGCTGTGGACCTAGCGTCGCGACGCTAGGCCTTCAAGTAAGGAAACGATTCTGCGGATCTCGTAGCGTCGCGACGCTACCACTTCAACTGCGCGCCAATGCCTTTTTTCC
TTATTTGAGCAGTGTCCCGAAGCCTAGGTTGAAGGGTCTCGACGCTGTGATGTCTCCAAGGGCAGAATGGTCATTTTACGCTCCGGTTTCGCTCGTTTAA
Protein sequenceShow/hide protein sequence
MKGSQEKYDSIKDENEGWTFVVRHKKQKQSYARKESRLFRDSKRKVKSQRKKEKKKSRRSKPVVEESEDFFCHPQPITLAEYFPRSFLDDNQEEAFETVTCHIVDVVEDD
DVPTSSSGTVAGPGDLSSFSIKDLLSLPQEAKSVLINALIESDGLGYKSPEPVRIIRGGKAKVEDTNHITVEEVDDSKEKESVDQRTSVFRRTRPPVARALVFQRLSVNE
TEEENAQTTNNSTRPSVFRRLSMPIGEEDSTFSNPDVTRPSAFQRLNMPIGEEENTLSTPNVTRPSVFQRLSVTTRMKRSRRWFLEGLQTWKKSQPNMENFNSGNCLASR
CCGPSVATLGLQVRKRFCGSRSVATLPLQLRANAFFPYLSSVPKPRLKGLDAVMSPRAEWSFYAPVSLV