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Spg004576 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004576
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold9:13657837..13662955
RNA-Seq ExpressionSpg004576
SyntenySpg004576
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]7.7e-2647.5Show/hide
Query:  IRKAHAKPAIAESEFNLSTSGFWFGLSYTKGTKREPRICVVCVRGNAGQIGWESHFYFFRPRGNRSSLQTGELDKTVEVELPVPDTLPTSAESSKLSFST
        I K +AKPAIAES  N       FGLSY +  + E    +      +G     S      PRGNR +L TG+LDKTVE+ELPVPDTLPTSAESSK + ST
Subjt:  IRKAHAKPAIAESEFNLSTSGFWFGLSYTKGTKREPRICVVCVRGNAGQIGWESHFYFFRPRGNRSSLQTGELDKTVEVELPVPDTLPTSAESSKLSFST

Query:  WVELYIESVYIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV
        W+ELY ESV++  + +             EG    +  DD+ WLHA+F AK AG PGGGV
Subjt:  WVELYIESVYIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.5e-2151.2Show/hide
Query:  PRGNRSSLQTGELDKT---------------VEVELPVPDTLPTSAESSKLSFSTWVELYIESVYI-------------VNVLFNVQEGQRVSLEEDDVR
        PRGNR SLQT ELDKT               V +ELPVPD LPTSAESS  + STW+ELY ESV++             ++++FNV  G    +  DDV 
Subjt:  PRGNRSSLQTGELDKT---------------VEVELPVPDTLPTSAESSKLSFSTWVELYIESVYI-------------VNVLFNVQEGQRVSLEEDDVR

Query:  WLHAIFRAKLAGGPGGGVTTWYQSS
        WLHA+FRAK  GGPGGGVTTW  S+
Subjt:  WLHAIFRAKLAGGPGGGVTTWYQSS

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.2e-2051.24Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEVELPVPDTLPTSAESSKLSFSTWVELYIESVYI-------------VNVLFNVQEGQRVSLEEDDV
        RGNRSSLQ+GELD T                 VE+ELPVPDTLPTSAESS+ + STW+ELY ESV++             ++++F+V  G    +  DDV
Subjt:  RGNRSSLQTGELDKT-----------------VEVELPVPDTLPTSAESSKLSFSTWVELYIESVYI-------------VNVLFNVQEGQRVSLEEDDV

Query:  RWLHAIFRAKLAGGPGGGVTT
         WLHA+FRAK  GGPGGGVTT
Subjt:  RWLHAIFRAKLAGGPGGGVTT

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]2.2e-2051.22Show/hide
Query:  PRGNRSSLQTGELDKT-----------------VEVELPVPDTLPTSAESSKLSFSTWVELYIESVYIVNVLFNVQ----------EGQRVSLEEDDVRW
        PRGNRSSLQTGELDKT                 VE+ELPVPDTLPTSAES   + STW+ELY E V++  + +             EG    +  DDV W
Subjt:  PRGNRSSLQTGELDKT-----------------VEVELPVPDTLPTSAESSKLSFSTWVELYIESVYIVNVLFNVQ----------EGQRVSLEEDDVRW

Query:  LHAIFRAKLAGGPGGGVTTWYQS
        LH +FRAK+AGGPGGGVT   QS
Subjt:  LHAIFRAKLAGGPGGGVTTWYQS

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.5e-2443.5Show/hide
Query:  STSGFW---FGLSYTKGTK------REPRICVVCVRGNAGQIGWESHFYFFRPRGNRSSLQTGELDKTV---------------EVELPVPDTLPTSAES
        +T   W   F LSY +GTK      +     V+    +  +I   +   +  PRGNR SLQTGELDKTV                +ELPVPDTLPTSAES
Subjt:  STSGFW---FGLSYTKGTK------REPRICVVCVRGNAGQIGWESHFYFFRPRGNRSSLQTGELDKTV---------------EVELPVPDTLPTSAES

Query:  SKLSFSTWVELYIESVYI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQSS
        S  + STW+ELY ESV++             ++++FNV  G    +  DDV WLHA+FRAK  GGPGGGVTTW  S+
Subjt:  SKLSFSTWVELYIESVYI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQSS

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein3.7e-2647.5Show/hide
Query:  IRKAHAKPAIAESEFNLSTSGFWFGLSYTKGTKREPRICVVCVRGNAGQIGWESHFYFFRPRGNRSSLQTGELDKTVEVELPVPDTLPTSAESSKLSFST
        I K +AKPAIAES  N       FGLSY +  + E    +      +G     S      PRGNR +L TG+LDKTVE+ELPVPDTLPTSAESSK + ST
Subjt:  IRKAHAKPAIAESEFNLSTSGFWFGLSYTKGTKREPRICVVCVRGNAGQIGWESHFYFFRPRGNRSSLQTGELDKTVEVELPVPDTLPTSAESSKLSFST

Query:  WVELYIESVYIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV
        W+ELY ESV++  + +             EG    +  DD+ WLHA+F AK AG PGGGV
Subjt:  WVELYIESVYIVNVLFNVQ----------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGGV

A0A5A7UT17 CCHC-type domain-containing protein7.3e-2251.2Show/hide
Query:  PRGNRSSLQTGELDKT---------------VEVELPVPDTLPTSAESSKLSFSTWVELYIESVYI-------------VNVLFNVQEGQRVSLEEDDVR
        PRGNR SLQT ELDKT               V +ELPVPD LPTSAESS  + STW+ELY ESV++             ++++FNV  G    +  DDV 
Subjt:  PRGNRSSLQTGELDKT---------------VEVELPVPDTLPTSAESSKLSFSTWVELYIESVYI-------------VNVLFNVQEGQRVSLEEDDVR

Query:  WLHAIFRAKLAGGPGGGVTTWYQSS
        WLHA+FRAK  GGPGGGVTTW  S+
Subjt:  WLHAIFRAKLAGGPGGGVTTWYQSS

A0A5A7V9N3 Reverse transcriptase1.1e-2051.24Show/hide
Query:  RGNRSSLQTGELDKT-----------------VEVELPVPDTLPTSAESSKLSFSTWVELYIESVYI-------------VNVLFNVQEGQRVSLEEDDV
        RGNRSSLQ+GELD T                 VE+ELPVPDTLPTSAESS+ + STW+ELY ESV++             ++++F+V  G    +  DDV
Subjt:  RGNRSSLQTGELDKT-----------------VEVELPVPDTLPTSAESSKLSFSTWVELYIESVYI-------------VNVLFNVQEGQRVSLEEDDV

Query:  RWLHAIFRAKLAGGPGGGVTT
         WLHA+FRAK  GGPGGGVTT
Subjt:  RWLHAIFRAKLAGGPGGGVTT

A0A5A7VIY9 Uncharacterized protein1.1e-2051.22Show/hide
Query:  PRGNRSSLQTGELDKT-----------------VEVELPVPDTLPTSAESSKLSFSTWVELYIESVYIVNVLFNVQ----------EGQRVSLEEDDVRW
        PRGNRSSLQTGELDKT                 VE+ELPVPDTLPTSAES   + STW+ELY E V++  + +             EG    +  DDV W
Subjt:  PRGNRSSLQTGELDKT-----------------VEVELPVPDTLPTSAESSKLSFSTWVELYIESVYIVNVLFNVQ----------EGQRVSLEEDDVRW

Query:  LHAIFRAKLAGGPGGGVTTWYQS
        LH +FRAK+AGGPGGGVT   QS
Subjt:  LHAIFRAKLAGGPGGGVTTWYQS

A0A5D3CJX3 CCHC-type domain-containing protein7.0e-2543.5Show/hide
Query:  STSGFW---FGLSYTKGTK------REPRICVVCVRGNAGQIGWESHFYFFRPRGNRSSLQTGELDKTV---------------EVELPVPDTLPTSAES
        +T   W   F LSY +GTK      +     V+    +  +I   +   +  PRGNR SLQTGELDKTV                +ELPVPDTLPTSAES
Subjt:  STSGFW---FGLSYTKGTK------REPRICVVCVRGNAGQIGWESHFYFFRPRGNRSSLQTGELDKTV---------------EVELPVPDTLPTSAES

Query:  SKLSFSTWVELYIESVYI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQSS
        S  + STW+ELY ESV++             ++++FNV  G    +  DDV WLHA+FRAK  GGPGGGVTTW  S+
Subjt:  SKLSFSTWVELYIESVYI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLAGGPGGGVTTWYQSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTAGTACCGGAAGGGAATCGCATGTTTATTTCTCGCTTAGGCATCAATATTCTGTCGATTCTTTGTTATGCGCTGCACTAATATTTTATTTGTCACATGTGGTTGC
TGCGGATTTAAGGAAAGACACTTTTACTACTCGCCTCTTCCCTGTGGATTCGACCCTGGAATACTCCAGTCGCTCCAAGGAAACCCAACACGAAGACAACCAAACTCCTG
TCATTGCAAACAAGATGCTGAGACGCATGATAGAATCTGCTCAACTTGAAATCGCCACTGCAGAAAATCTGATGCTTGGCAAATTCATCTCTCCTTCTCAGCAACCAAAT
AAAACCTCGAGTCCTGACGCAATGTCTTTTATGATGACTGATGAAGGAAGTAGTGAAGAATGGATGACTGAAGTTGAGAAGAAAATCAACATGTTACTGAAGATGGTTGA
AGAGAAAGACTACGAAATTGCCTCTCTCAAAAGCCAGATGGAGAGTCGGGATGCCAGCACTTTAAGGAGAGAGGGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTGGA
GGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTGGTTCGGTTTGAGCTACACAAAAGGAACTAAG
AGGGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGAAATGCTGGGCAAATCGGTTGGGAATCTCACTTTTATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAAC
CGGGGAACTAGATAAGACAGTAGAGGTCGAGCTTCCAGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAAATTAAGCTTCAGTACGTGGGTGGAGTTGTATATTG
AGTCTGTCTATATTGTAAATGTCTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCA
GGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTAGTACCGGAAGGGAATCGCATGTTTATTTCTCGCTTAGGCATCAATATTCTGTCGATTCTTTGTTATGCGCTGCACTAATATTTTATTTGTCACATGTGGTTGC
TGCGGATTTAAGGAAAGACACTTTTACTACTCGCCTCTTCCCTGTGGATTCGACCCTGGAATACTCCAGTCGCTCCAAGGAAACCCAACACGAAGACAACCAAACTCCTG
TCATTGCAAACAAGATGCTGAGACGCATGATAGAATCTGCTCAACTTGAAATCGCCACTGCAGAAAATCTGATGCTTGGCAAATTCATCTCTCCTTCTCAGCAACCAAAT
AAAACCTCGAGTCCTGACGCAATGTCTTTTATGATGACTGATGAAGGAAGTAGTGAAGAATGGATGACTGAAGTTGAGAAGAAAATCAACATGTTACTGAAGATGGTTGA
AGAGAAAGACTACGAAATTGCCTCTCTCAAAAGCCAGATGGAGAGTCGGGATGCCAGCACTTTAAGGAGAGAGGGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTGGA
GGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGAGTTCAACCTGTCAACCTCTGGTTTTTGGTTCGGTTTGAGCTACACAAAAGGAACTAAG
AGGGAACCTCGAATCTGTGTTGTCTGTGTTCGGGGAAATGCTGGGCAAATCGGTTGGGAATCTCACTTTTATTTCTTCAGGCCAAGAGGAAATAGGTCGAGTCTACAAAC
CGGGGAACTAGATAAGACAGTAGAGGTCGAGCTTCCAGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAAATTAAGCTTCAGTACGTGGGTGGAGTTGTATATTG
AGTCTGTCTATATTGTAAATGTCTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCTAGCA
GGTGGTCCGGGAGGGGGTGTGACAACTTGGTATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MCSTGRESHVYFSLRHQYSVDSLLCAALIFYLSHVVAADLRKDTFTTRLFPVDSTLEYSSRSKETQHEDNQTPVIANKMLRRMIESAQLEIATAENLMLGKFISPSQQPN
KTSSPDAMSFMMTDEGSSEEWMTEVEKKINMLLKMVEEKDYEIASLKSQMESRDASTLRREGRRKKKKNFVVWRLKKIRKAHAKPAIAESEFNLSTSGFWFGLSYTKGTK
REPRICVVCVRGNAGQIGWESHFYFFRPRGNRSSLQTGELDKTVEVELPVPDTLPTSAESSKLSFSTWVELYIESVYIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKLA
GGPGGGVTTWYQSS