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Spg004581 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004581
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Genome locationscaffold9:10448405..10452225
RNA-Seq ExpressionSpg004581
SyntenySpg004581
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047869.1 hypothetical protein E6C27_scaffold133G001380 [Cucumis melo var. makuwa]1.2e-0952.87Show/hide
Query:  NESVRHLVQVSDSVLKRTTFLLSLIWVGVNSIFQDYVPRYLSSLIPKMVGLLSRRCWATFTHANQRIILNKQEFIVSLGLRSGYLGH
        NE V  LVQ  DSVLK TT+LLS  WVGVNS+         S L PK   L  R+  A  T+ + RI+ N+Q+FIVS GLRS YLGH
Subjt:  NESVRHLVQVSDSVLKRTTFLLSLIWVGVNSIFQDYVPRYLSSLIPKMVGLLSRRCWATFTHANQRIILNKQEFIVSLGLRSGYLGH

KAA0054446.1 hypothetical protein E6C27_scaffold24G002070 [Cucumis melo var. makuwa]1.9e-0751.25Show/hide
Query:  VQVSDSVLKRTTFLLSLIWVGVNSIFQDYVPRYLSSLIPKMVGLLSRRCWATFTHANQRIILNKQEFIVSLGLRSGYLGH
        VQ  DSVLK TT+LL+L WVGVNSI     P    SL  K            FT+A+ RII  +QEF VS GLR  YLGH
Subjt:  VQVSDSVLKRTTFLLSLIWVGVNSIFQDYVPRYLSSLIPKMVGLLSRRCWATFTHANQRIILNKQEFIVSLGLRSGYLGH

TYK16320.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]9.3e-0756.14Show/hide
Query:  FQDYVPRYLSSLIPKMVGLLSRRCWATFTHANQRIILNKQEFIVSLGLRSGYLGHRM
        F  YVP Y   L P+M GLL +R  A  T+A+ RI+LN+Q+FIVSLGLRS YLG  +
Subjt:  FQDYVPRYLSSLIPKMVGLLSRRCWATFTHANQRIILNKQEFIVSLGLRSGYLGHRM

TrEMBL top hitse value%identityAlignment
A0A5A7U348 Uncharacterized protein5.7e-1052.87Show/hide
Query:  NESVRHLVQVSDSVLKRTTFLLSLIWVGVNSIFQDYVPRYLSSLIPKMVGLLSRRCWATFTHANQRIILNKQEFIVSLGLRSGYLGH
        NE V  LVQ  DSVLK TT+LLS  WVGVNS+         S L PK   L  R+  A  T+ + RI+ N+Q+FIVS GLRS YLGH
Subjt:  NESVRHLVQVSDSVLKRTTFLLSLIWVGVNSIFQDYVPRYLSSLIPKMVGLLSRRCWATFTHANQRIILNKQEFIVSLGLRSGYLGH

A0A5D3BX92 Uncharacterized protein8.0e-0442.06Show/hide
Query:  GLIEYGPLISFRCGNESVRHL--VQVSDSVLKRTTFLLSLIWVGVNSIFQDYVPRYLSSLIPKMVGLLSRRCWAT----FTHANQRIILNKQEFIVSLGL
        GLI  G LIS        RH   +Q  DSVLK TT+LL+L  VGV+SI        +S  I  ++ L     W T     T+ + R+I  +Q+FIVS GL
Subjt:  GLIEYGPLISFRCGNESVRHL--VQVSDSVLKRTTFLLSLIWVGVNSIFQDYVPRYLSSLIPKMVGLLSRRCWAT----FTHANQRIILNKQEFIVSLGL

Query:  RSGYLGH
        R  YLGH
Subjt:  RSGYLGH

A0A5D3CRT6 Uncharacterized protein9.1e-0851.25Show/hide
Query:  VQVSDSVLKRTTFLLSLIWVGVNSIFQDYVPRYLSSLIPKMVGLLSRRCWATFTHANQRIILNKQEFIVSLGLRSGYLGH
        VQ  DSVLK TT+LL+L WVGVNSI     P    SL  K            FT+A+ RII  +QEF VS GLR  YLGH
Subjt:  VQVSDSVLKRTTFLLSLIWVGVNSIFQDYVPRYLSSLIPKMVGLLSRRCWATFTHANQRIILNKQEFIVSLGLRSGYLGH

A0A5D3CY86 Retrotransposon protein, putative, Ty3-gypsy subclass4.5e-0756.14Show/hide
Query:  FQDYVPRYLSSLIPKMVGLLSRRCWATFTHANQRIILNKQEFIVSLGLRSGYLGHRM
        F  YVP Y   L P+M GLL +R  A  T+A+ RI+LN+Q+FIVSLGLRS YLG  +
Subjt:  FQDYVPRYLSSLIPKMVGLLSRRCWATFTHANQRIILNKQEFIVSLGLRSGYLGHRM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATCAGCGTCGAGACGCTGAAGAACACCGTCTCGATGCTGACCCGTCTTCTTCTTCTTTAGAGCAATTACAGGATAATGTTGGGTACCTTATCCTGGTGACACTATG
GATACGACCCACTTTGTATTATGATACAAACGCAATGATCCAACGTGTTCGTGTAAAGGACATGCGAGTGGGGTATCCTGCAATGAGTTTGCATAAGACCAGACCGCGAA
ATAGTCCATTAGGTCCCACCGGTAGCTCATTTAGGGCGTTGAGCAAAAAGAAGAGACTTTGGGCTGCTTTAGTTTTTCTGCAAACCTTGAAGAATTTGGCGAAATTCGGT
CAAGATCGTCTGCGAAGTTTTGTTGCTGTAAAATTATTGTCGTCGTATGGGTATTCGATTTGTGGTTTAATTGAGTATGGTCCTCTGATAAGTTTCCGCTGCGGTAATGA
GAGCGTGAGGCACCTTGTTCAAGTCTCGGACTCAGTACTTAAGAGAACAACCTTTCTACTATCCCTAATATGGGTAGGAGTGAATTCCATCTTCCAGGACTATGTCCCCA
GATATTTATCCAGTCTTATTCCCAAAATGGTAGGCTTATTGAGTCGGCGATGTTGGGCCACTTTCACCCATGCAAATCAAAGGATAATCCTGAACAAACAGGAGTTCATA
GTTAGTTTAGGATTAAGATCGGGTTACCTAGGTCATCGTATGAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGCATCAGCGTCGAGACGCTGAAGAACACCGTCTCGATGCTGACCCGTCTTCTTCTTCTTTAGAGCAATTACAGGATAATGTTGGGTACCTTATCCTGGTGACACTATG
GATACGACCCACTTTGTATTATGATACAAACGCAATGATCCAACGTGTTCGTGTAAAGGACATGCGAGTGGGGTATCCTGCAATGAGTTTGCATAAGACCAGACCGCGAA
ATAGTCCATTAGGTCCCACCGGTAGCTCATTTAGGGCGTTGAGCAAAAAGAAGAGACTTTGGGCTGCTTTAGTTTTTCTGCAAACCTTGAAGAATTTGGCGAAATTCGGT
CAAGATCGTCTGCGAAGTTTTGTTGCTGTAAAATTATTGTCGTCGTATGGGTATTCGATTTGTGGTTTAATTGAGTATGGTCCTCTGATAAGTTTCCGCTGCGGTAATGA
GAGCGTGAGGCACCTTGTTCAAGTCTCGGACTCAGTACTTAAGAGAACAACCTTTCTACTATCCCTAATATGGGTAGGAGTGAATTCCATCTTCCAGGACTATGTCCCCA
GATATTTATCCAGTCTTATTCCCAAAATGGTAGGCTTATTGAGTCGGCGATGTTGGGCCACTTTCACCCATGCAAATCAAAGGATAATCCTGAACAAACAGGAGTTCATA
GTTAGTTTAGGATTAAGATCGGGTTACCTAGGTCATCGTATGAAATAG
Protein sequenceShow/hide protein sequence
MHQRRDAEEHRLDADPSSSSLEQLQDNVGYLILVTLWIRPTLYYDTNAMIQRVRVKDMRVGYPAMSLHKTRPRNSPLGPTGSSFRALSKKKRLWAALVFLQTLKNLAKFG
QDRLRSFVAVKLLSSYGYSICGLIEYGPLISFRCGNESVRHLVQVSDSVLKRTTFLLSLIWVGVNSIFQDYVPRYLSSLIPKMVGLLSRRCWATFTHANQRIILNKQEFI
VSLGLRSGYLGHRMK