CuGenDBv2

Gene ID	Spg004588
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	WD repeat-containing protein 20-like
Genome location	scaffold9:8437025..8439216
RNA-Seq Expression	Spg004588
Synteny	Spg004588
Gene Ontology terms	GO:0005515 - protein binding (molecular function)
InterPro domains	IPR015943 - WD40/YVTN repeat-like-containing domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6607184.1 hypothetical protein SDJN03_00526, partial [Cucurbita argyrosperma subsp. sororia]

3.1e-32

92.21

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Query:  GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        G+LNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIG NSGDVY VSLRQQLQDVGKKLVGAQHYNKEGTVNN +
Subjt:  GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

XP_022156951.1 dystrophia myotonica WD repeat-containing protein-like [Momordica charantia]

4.0e-32

90.91

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Query:  GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        G+LNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIG NSGDVY +SLRQQLQDVGKKLVGAQHYNKEGTVNN +
Subjt:  GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

XP_022948722.1 WD repeat-containing protein 20-like [Cucurbita moschata]

3.1e-32

92.21

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Query:  GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        G+LNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIG NSGDVY VSLRQQLQDVGKKLVGAQHYNKEGTVNN +
Subjt:  GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

XP_022997935.1 WD repeat-containing protein 20-like [Cucurbita maxima]

3.1e-32

92.21

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Query:  GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        G+LNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIG NSGDVY VSLRQQLQDVGKKLVGAQHYNKEGTVNN +
Subjt:  GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

XP_023523294.1 WD repeat-containing protein 20-like [Cucurbita pepo subsp. pepo]

3.1e-32

92.21

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Query:  GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        G+LNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIG NSGDVY VSLRQQLQDVGKKLVGAQHYNKEGTVNN +
Subjt:  GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7UNI0 Dystrophia myotonica WD repeat-containing protein-like

4.3e-32

90.91

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Query:  GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        G+LNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIG NSGDVY VSLRQQLQDVGKKLVGAQHYNKEG+VNN +
Subjt:  GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

A0A6J1DWI2 dystrophia myotonica WD repeat-containing protein-like

1.9e-32

90.91

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Query:  GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        G+LNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIG NSGDVY +SLRQQLQDVGKKLVGAQHYNKEGTVNN +
Subjt:  GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

A0A6J1GA15 WD repeat-containing protein 20-like

1.5e-32

92.21

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Query:  GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        G+LNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIG NSGDVY VSLRQQLQDVGKKLVGAQHYNKEGTVNN +
Subjt:  GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

A0A6J1HZM7 dystrophia myotonica WD repeat-containing protein-like isoform X2

4.3e-32

90.91

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Query:  GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        G+LNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIG NSGDVY VSLRQQLQDVGKKLVGAQHYNKEG+VNN +
Subjt:  GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

A0A6J1KBA4 WD repeat-containing protein 20-like

1.5e-32

92.21

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Query:  GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        G+LNSPDKDPIKSLHFSNSNPICHAFD EAKDGHDLLIG NSGDVY VSLRQQLQDVGKKLVGAQHYNKEGTVNN +
Subjt:  GNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G37160.1 Transducin/WD40 repeat-like superfamily protein

1.4e-30

78.95

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Query:  NLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        +LNS DKDP+KS+H SNSNP+CHAF  +AKDGHDLLIG NSGDVY VSLRQQLQDVGKKLV AQHYNK+G+VNN +
Subjt:  NLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

AT2G37160.2 Transducin/WD40 repeat-like superfamily protein

1.4e-30

78.95

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Query:  NLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        +LNS DKDP+KS+H SNSNP+CHAF  +AKDGHDLLIG NSGDVY VSLRQQLQDVGKKLV AQHYNK+G+VNN +
Subjt:  NLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

AT3G53390.1 Transducin/WD40 repeat-like superfamily protein

8.0e-31

78.95

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Query:  NLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ
        +LNS +KDP+KS+HFSNSNP+CHAFD +AKDGHDLLIG NSGDVY VSLRQQLQDV KKLVGA HYNK+G+VNN +
Subjt:  NLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQ

Sequences

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CDS sequence

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ATGATCGATGAGTTCCTTCCCCATCCTCCTTTTCGGGACCAAGGAAATTTCTTATGGCAAGTTGGGATTTGTGCTATCATTTGGGGTTTGTGGGGGGAGAGAAATAACAG
AATTTTTAGAGGGAAGGAGAGGAATGCGGAGGATGTTTGGGACATCATTAAATATTCTAATATCATTGAAAAGATTGAAGACTTAGCTCCACTTGTGAGAACCAGCAACT
CTATCTCCTATAATCTCCCGGACGTGGAAGTTGCGCTTTTGGTTTTTCTGTTGAATACATGGGCTCAAAACAAAACTTTAGCTCAGAGGAAGATGATCCTGAGTATGTCT
CATTCAGGTAACCTTAATTCACCAGATAAGGATCCTATTAAGTCTTTGCATTTTAGCAATTCAAATCCTATCTGCCATGCGTTTGATCTTGAAGCTAAGGATGGTCATGA
CCTACTTATTGGATTCAATTCTGGAGATGTCTACTTGGTTTCTTTAAGACAACAATTACAAGATGTTGGGAAGAAGCTTGTTGGAGCCCAACATTATAACAAAGAGGGCA
CTGTCAATAACGGGCAAGAGCATTAG

mRNA sequence

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Protein sequence

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MIDEFLPHPPFRDQGNFLWQVGICAIIWGLWGERNNRIFRGKERNAEDVWDIIKYSNIIEKIEDLAPLVRTSNSISYNLPDVEVALLVFLLNTWAQNKTLAQRKMILSMS
HSGNLNSPDKDPIKSLHFSNSNPICHAFDLEAKDGHDLLIGFNSGDVYLVSLRQQLQDVGKKLVGAQHYNKEGTVNNGQEH

Spg004588 (gene) of Sponge gourd (cylindrica) v1 genome