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Spg004604 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004604
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPectinesterase
Genome locationscaffold9:11987900..11989007
RNA-Seq ExpressionSpg004604
SyntenySpg004604
Gene Ontology termsGO:0042545 - cell wall modification (biological process)
GO:0045490 - pectin catabolic process (biological process)
GO:0005576 - extracellular region (cellular component)
GO:0016021 - integral component of membrane (cellular component)
GO:0030599 - pectinesterase activity (molecular function)
GO:0045330 - aspartyl esterase activity (molecular function)
InterPro domainsIPR000070 - Pectinesterase, catalytic
IPR011050 - Pectin lyase fold/virulence factor
IPR012334 - Pectin lyase fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022137308.1 probable pectinesterase/pectinesterase inhibitor 39 [Momordica charantia]1.3e-4269.06Show/hide
Query:  VFNVTVSLDG---------------------------LGTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKN
        VFN TVSLDG                            GTYNEHVEIP  KTF+ALIGDDASTTIIVDNRSNRIGF TF SATFNVKG++FMAKSITFKN
Subjt:  VFNVTVSLDG---------------------------LGTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKN

Query:  SAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRNK
        SAGP+NGQAVALLNDA+QTVYY C+FLGFQDTLYV  +K
Subjt:  SAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRNK

XP_022143502.1 pectinesterase-like [Momordica charantia]1.6e-3257.14Show/hide
Query:  IVFNVTVSLDG---------------------------LGTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFK
        IVFN TVSLDG                            GTYNEH+E+   KTFI LIGD+A+TT+IVDNRSN  GF T  SATF V+G +FMAKSITF+
Subjt:  IVFNVTVSLDG---------------------------LGTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFK

Query:  NSAGPKNGQAVALLND-ANQTVYYKCVFLGFQDTLYVNRN
        NSAGP NGQAVALLND AN   +Y+CVFLG+QDT+++N N
Subjt:  NSAGPKNGQAVALLND-ANQTVYYKCVFLGFQDTLYVNRN

XP_022148123.1 probable pectinesterase/pectinesterase inhibitor 39 [Momordica charantia]5.4e-3356.62Show/hide
Query:  IVFNVTVSLDGL---------------------------GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFK
        I FN TVSLDG                            G Y EH+E+P  KTFI+LIGDDASTT+IVD+RSN  GF+T  SATF VK KHF+A+ +TF+
Subjt:  IVFNVTVSLDGL---------------------------GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFK

Query:  NSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYV
        NSAGP+NGQAVA+L++AN T YYKCVF+G+QDTLYV
Subjt:  NSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYV

XP_022150325.1 probable pectinesterase/pectinesterase inhibitor 44 [Momordica charantia]5.4e-3359.4Show/hide
Query:  FNVTVSLDGL---------------------------GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNS
        FN+TVSLDG+                           GTYNEHVE+P  KTFIALIGDDASTTIIVDNRSN  GF+T  SAT  V G++FMA+S+TF+NS
Subjt:  FNVTVSLDGL---------------------------GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNS

Query:  AGPKNGQAVALLNDANQTVYYKCVFLGFQDTLY
        AGP  GQAVA+L+ A  TVYYKCVFLG+QDTL+
Subjt:  AGPKNGQAVALLNDANQTVYYKCVFLGFQDTLY

XP_038895889.1 putative pectinesterase/pectinesterase inhibitor 22 [Benincasa hispida]5.9e-3275.76Show/hide
Query:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLND-ANQTVYYKCVFLGFQDTLYVN
        G Y EHVEI   KTFIALIGD+A+ TIIVD+RS+  GF TF SATF VKG +FMA+SITF+NSAGP+NGQAVALLN+ AN TVYYKCVFLG+QDTLYVN
Subjt:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLND-ANQTVYYKCVFLGFQDTLYVN

TrEMBL top hitse value%identityAlignment
A0A5D3BM28 Pectinesterase1.9e-3156.03Show/hide
Query:  IVFNVTVSLDGL---------------------------GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFK
        I FN+TVSLDG                            GTY+E ++IP AK FIALIGDDA TTII+DNRSN  GF T +SAT  V+G +FMAKS+TF+
Subjt:  IVFNVTVSLDGL---------------------------GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFK

Query:  NSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRNKQ
        NSAGP+NGQAVA+ + A+ T YYKC FLGFQDTLYVN   Q
Subjt:  NSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRNKQ

A0A6J1C9Z6 Pectinesterase6.2e-4369.06Show/hide
Query:  VFNVTVSLDG---------------------------LGTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKN
        VFN TVSLDG                            GTYNEHVEIP  KTF+ALIGDDASTTIIVDNRSNRIGF TF SATFNVKG++FMAKSITFKN
Subjt:  VFNVTVSLDG---------------------------LGTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKN

Query:  SAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRNK
        SAGP+NGQAVALLNDA+QTVYY C+FLGFQDTLYV  +K
Subjt:  SAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRNK

A0A6J1CR03 Pectinesterase7.5e-3357.14Show/hide
Query:  IVFNVTVSLDG---------------------------LGTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFK
        IVFN TVSLDG                            GTYNEH+E+   KTFI LIGD+A+TT+IVDNRSN  GF T  SATF V+G +FMAKSITF+
Subjt:  IVFNVTVSLDG---------------------------LGTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFK

Query:  NSAGPKNGQAVALLND-ANQTVYYKCVFLGFQDTLYVNRN
        NSAGP NGQAVALLND AN   +Y+CVFLG+QDT+++N N
Subjt:  NSAGPKNGQAVALLND-ANQTVYYKCVFLGFQDTLYVNRN

A0A6J1D381 Pectinesterase2.6e-3356.62Show/hide
Query:  IVFNVTVSLDGL---------------------------GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFK
        I FN TVSLDG                            G Y EH+E+P  KTFI+LIGDDASTT+IVD+RSN  GF+T  SATF VK KHF+A+ +TF+
Subjt:  IVFNVTVSLDGL---------------------------GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFK

Query:  NSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYV
        NSAGP+NGQAVA+L++AN T YYKCVF+G+QDTLYV
Subjt:  NSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYV

A0A6J1D863 Pectinesterase2.6e-3359.4Show/hide
Query:  FNVTVSLDGL---------------------------GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNS
        FN+TVSLDG+                           GTYNEHVE+P  KTFIALIGDDASTTIIVDNRSN  GF+T  SAT  V G++FMA+S+TF+NS
Subjt:  FNVTVSLDGL---------------------------GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNS

Query:  AGPKNGQAVALLNDANQTVYYKCVFLGFQDTLY
        AGP  GQAVA+L+ A  TVYYKCVFLG+QDTL+
Subjt:  AGPKNGQAVALLNDANQTVYYKCVFLGFQDTLY

SwissProt top hitse value%identityAlignment
O22256 Probable pectinesterase/pectinesterase inhibitor 203.2e-2046.08Show/hide
Query:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRN
        G Y E+VE+P  K ++ +IGD  + T+I  NRS   G+TTF+SATF + G +F+  +IT +N+AGP  GQAVAL +  + +V+Y C F  +QDTLY +  
Subjt:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRN

Query:  KQ
        +Q
Subjt:  KQ

O81301 Probable pectinesterase/pectinesterase inhibitor 403.2e-2048.04Show/hide
Query:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRN
        G Y E++EIP  KT I  IGD    T+I  NRS   G+T F SAT  V+G  F+AK ++F N AGP+  QAVAL + ++ + YY+C F  +QDT+YV+ +
Subjt:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRN

Query:  KQ
        KQ
Subjt:  KQ

O81415 Probable pectinesterase/pectinesterase inhibitor 391.4e-2049.02Show/hide
Query:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRN
        G Y E+VE+P  KT I  IGD    T+I  NRS   G++TF + T  VKGK ++AK I+F NSAGP   QAVA  + ++ + +Y+C F G+QDTLYV+  
Subjt:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRN

Query:  KQ
        KQ
Subjt:  KQ

Q43062 Pectinesterase/pectinesterase inhibitor PPE8B3.7e-2150.98Show/hide
Query:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRN
        GTY E+VEI   K  + +IGD    TII  NRS   G+TTF SATF V G+ F+A+ ITF+N+AGP+  QAVAL +D++ +V+Y+C   G+QDTLY +  
Subjt:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRN

Query:  KQ
        +Q
Subjt:  KQ

Q9FHN5 Probable pectinesterase/pectinesterase inhibitor 593.2e-2045.1Show/hide
Query:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRN
        G Y E++ +      I L+GD   +TII   RS + G+TT++SAT  ++G HF+AK ITF+N+AGP  GQAVAL + ++ +++YKC   G+QDTL V+  
Subjt:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRN

Query:  KQ
        +Q
Subjt:  KQ

Arabidopsis top hitse value%identityAlignment
AT2G47550.1 Plant invertase/pectin methylesterase inhibitor superfamily2.2e-2146.08Show/hide
Query:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRN
        G Y E+VE+P  K ++ +IGD  + T+I  NRS   G+TTF+SATF + G +F+  +IT +N+AGP  GQAVAL +  + +V+Y C F  +QDTLY +  
Subjt:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRN

Query:  KQ
        +Q
Subjt:  KQ

AT3G43270.1 Plant invertase/pectin methylesterase inhibitor superfamily2.9e-2148.04Show/hide
Query:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRN
        G Y E+VEI   K  I ++GD    T+I  NRS   G+TTF SATF V G+ F+A+ ITF+N+AGP+  QAVA+ +D +  V+Y+C   G+QDTLY +  
Subjt:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRN

Query:  KQ
        +Q
Subjt:  KQ

AT4G02300.1 Plant invertase/pectin methylesterase inhibitor superfamily1.0e-2149.02Show/hide
Query:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRN
        G Y E+VE+P  KT I  IGD    T+I  NRS   G++TF + T  VKGK ++AK I+F NSAGP   QAVA  + ++ + +Y+C F G+QDTLYV+  
Subjt:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRN

Query:  KQ
        KQ
Subjt:  KQ

AT4G02320.1 Plant invertase/pectin methylesterase inhibitor superfamily2.2e-2148.04Show/hide
Query:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRN
        G Y E++EIP  KT I  IGD    T+I  NRS   G+T F SAT  V+G  F+AK ++F N AGP+  QAVAL + ++ + YY+C F  +QDT+YV+ +
Subjt:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRN

Query:  KQ
        KQ
Subjt:  KQ

AT5G51490.1 Plant invertase/pectin methylesterase inhibitor superfamily2.2e-2145.1Show/hide
Query:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRN
        G Y E++ +      I L+GD   +TII   RS + G+TT++SAT  ++G HF+AK ITF+N+AGP  GQAVAL + ++ +++YKC   G+QDTL V+  
Subjt:  GTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTLYVNRN

Query:  KQ
        +Q
Subjt:  KQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CGGTTGTACATCGTTTTTAATGTTACTGTGTCCTTAGATGGATTGGGTACTTACAATGAGCATGTTGAAATTCCTTTTGCCAAGACATTTATTGCTCTTATTGGTGATGA
TGCATCCACAACTATTATAGTCGATAATCGAAGCAACCGAATTGGATTTACAACCTTTGACTCTGCCACATTTAATGTAAAGGGTAAACATTTTATGGCAAAGTCCATAA
CGTTCAAAAATTCTGCTGGACCTAAAAATGGCCAAGCAGTTGCCCTTTTGAATGATGCAAACCAAACAGTATACTACAAGTGCGTATTTCTTGGATTCCAAGACACACTT
TACGTAAACAGAAACAAGCAGGATGGTTGGAGTGGTCGCCCGGGAGGCCTCTAA
mRNA sequenceShow/hide mRNA sequence
CGGTTGTACATCGTTTTTAATGTTACTGTGTCCTTAGATGGATTGGGTACTTACAATGAGCATGTTGAAATTCCTTTTGCCAAGACATTTATTGCTCTTATTGGTGATGA
TGCATCCACAACTATTATAGTCGATAATCGAAGCAACCGAATTGGATTTACAACCTTTGACTCTGCCACATTTAATGTAAAGGGTAAACATTTTATGGCAAAGTCCATAA
CGTTCAAAAATTCTGCTGGACCTAAAAATGGCCAAGCAGTTGCCCTTTTGAATGATGCAAACCAAACAGTATACTACAAGTGCGTATTTCTTGGATTCCAAGACACACTT
TACGTAAACAGAAACAAGCAGGATGGTTGGAGTGGTCGCCCGGGAGGCCTCTAA
Protein sequenceShow/hide protein sequence
RLYIVFNVTVSLDGLGTYNEHVEIPFAKTFIALIGDDASTTIIVDNRSNRIGFTTFDSATFNVKGKHFMAKSITFKNSAGPKNGQAVALLNDANQTVYYKCVFLGFQDTL
YVNRNKQDGWSGRPGGL