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Spg004610 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004610
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTransposon Tf2-1 polyprotein isoform X1
Genome locationscaffold9:10609731..10614196
RNA-Seq ExpressionSpg004610
SyntenySpg004610
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033109.1 putative transposase [Cucumis melo var. makuwa]9.6e-0635.29Show/hide
Query:  LFPELVKLIDLKDATGFSSSWGSTLRTLSADEKRIAHWQHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRMTGQDQLLDATEEYDD
        +F + V+L+D            S++R +S ++KR+ HW+HLRL    AQ+  +LYKRH++ FP+WF+++M    +L ++   +DD
Subjt:  LFPELVKLIDLKDATGFSSSWGSTLRTLSADEKRIAHWQHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRMTGQDQLLDATEEYDD

KAA0050152.1 uncharacterized protein E6C27_scaffold675G001830 [Cucumis melo var. makuwa]2.5e-0644.16Show/hide
Query:  STLRTLSADEKRIAHW--------------QHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRMTGQDQLLDATEEYDD
        STLRTLS +EK+  HW              QHLRLIR QAQ+  DLY+RH++ FPDWF++ +    Q+ +    +DD
Subjt:  STLRTLSADEKRIAHW--------------QHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRMTGQDQLLDATEEYDD

XP_008450848.1 PREDICTED: uncharacterized protein LOC103492313 [Cucumis melo]2.1e-0548.44Show/hide
Query:  STLRTLSADEKRIAHW-------------QHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRMTGQ
        STLRTLS DEKRIAHW             ++LR I  +AQ+ +DL + H+Q FPDWFKS+ + +
Subjt:  STLRTLSADEKRIAHW-------------QHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRMTGQ

XP_016899806.1 PREDICTED: uncharacterized protein LOC103487435 [Cucumis melo]2.5e-0644.16Show/hide
Query:  STLRTLSADEKRIAHW--------------QHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRMTGQDQLLDATEEYDD
        STLRTLS +EK+  HW              QHLRLIR QAQ+  DLY+RH++ FPDWF++ +    Q+ +    +DD
Subjt:  STLRTLSADEKRIAHW--------------QHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRMTGQDQLLDATEEYDD

XP_022158896.1 uncharacterized protein LOC111025354 [Momordica charantia]1.8e-0746.91Show/hide
Query:  RPPPSFAKVLNLFPELVKLIDLKDATGFSSSWGSTLRTLSADEKRIAHWQHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRM
        RP  S AK   +  E +    L+ A         TLR L  DEKRI HWQHLR++R  A S TDLY+ HQ  F DWFKS++
Subjt:  RPPPSFAKVLNLFPELVKLIDLKDATGFSSSWGSTLRTLSADEKRIAHWQHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRM

TrEMBL top hitse value%identityAlignment
A0A1S3BQ73 uncharacterized protein LOC1034923131.0e-0548.44Show/hide
Query:  STLRTLSADEKRIAHW-------------QHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRMTGQ
        STLRTLS DEKRIAHW             ++LR I  +AQ+ +DL + H+Q FPDWFKS+ + +
Subjt:  STLRTLSADEKRIAHW-------------QHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRMTGQ

A0A1S4DUZ5 uncharacterized protein LOC1034874351.2e-0644.16Show/hide
Query:  STLRTLSADEKRIAHW--------------QHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRMTGQDQLLDATEEYDD
        STLRTLS +EK+  HW              QHLRLIR QAQ+  DLY+RH++ FPDWF++ +    Q+ +    +DD
Subjt:  STLRTLSADEKRIAHW--------------QHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRMTGQDQLLDATEEYDD

A0A5A7SVA2 Putative transposase4.7e-0635.29Show/hide
Query:  LFPELVKLIDLKDATGFSSSWGSTLRTLSADEKRIAHWQHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRMTGQDQLLDATEEYDD
        +F + V+L+D            S++R +S ++KR+ HW+HLRL    AQ+  +LYKRH++ FP+WF+++M    +L ++   +DD
Subjt:  LFPELVKLIDLKDATGFSSSWGSTLRTLSADEKRIAHWQHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRMTGQDQLLDATEEYDD

A0A5D3C5I5 Phytocyanin domain-containing protein1.2e-0644.16Show/hide
Query:  STLRTLSADEKRIAHW--------------QHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRMTGQDQLLDATEEYDD
        STLRTLS +EK+  HW              QHLRLIR QAQ+  DLY+RH++ FPDWF++ +    Q+ +    +DD
Subjt:  STLRTLSADEKRIAHW--------------QHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRMTGQDQLLDATEEYDD

A0A6J1E2A8 uncharacterized protein LOC1110253548.5e-0846.91Show/hide
Query:  RPPPSFAKVLNLFPELVKLIDLKDATGFSSSWGSTLRTLSADEKRIAHWQHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRM
        RP  S AK   +  E +    L+ A         TLR L  DEKRI HWQHLR++R  A S TDLY+ HQ  F DWFKS++
Subjt:  RPPPSFAKVLNLFPELVKLIDLKDATGFSSSWGSTLRTLSADEKRIAHWQHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGTCAGAATTTAGGGGAACTCCTGACGGTACGTTTAAATATTTGTTTAAATCCCTAATTTCATTAGCCATTTTCGATTTTCCTCCTTTTGTTCGTGCGCGCCGTCT
CCCACACCTTCGTCTCCCACCTTCGATTCGTGTCGCCGTCGCCGTCGTTCCGGTACTGCCACCGTTGTCGTTCCGCTCGTGCCCCCGTCGTGCCGCTCGAACCGCCATCG
TTTTGTCGTTCCTTGCAGCTGTCGCCTTTCGTCCGCCGCCATCTTTCGCGAAAGTGTTAAATTTGTTTCCTGAGCTTGTAAAGTTGATTGACCTAAAGGACGCTACTGGG
TTTAGCTCATCCTGGGGCTCTACGTTAAGGACGTTATCAGCGGATGAGAAGCGAATTGCACACTGGCAACATTTGAGATTAATTCGACTTCAAGCACAAAGCGTGACTGA
CTTGTATAAAAGACATCAACAAACATTTCCTGATTGGTTCAAGTCTCGAATGACGGGTCAAGACCAATTGCTCGACGCTACCGAAGAATATGATGATGAGGTGGAGACAA
TGGTCGAGGAAGAGAGGAGTGGAAGACTCAAGACGAAAGCTCAATTGGATAGAGTGCAAGGTCTAGTCGAGCAATTAATGCAGTCACAAGGAGGAGGAACATCGAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGTCAGAATTTAGGGGAACTCCTGACGGTACGTTTAAATATTTGTTTAAATCCCTAATTTCATTAGCCATTTTCGATTTTCCTCCTTTTGTTCGTGCGCGCCGTCT
CCCACACCTTCGTCTCCCACCTTCGATTCGTGTCGCCGTCGCCGTCGTTCCGGTACTGCCACCGTTGTCGTTCCGCTCGTGCCCCCGTCGTGCCGCTCGAACCGCCATCG
TTTTGTCGTTCCTTGCAGCTGTCGCCTTTCGTCCGCCGCCATCTTTCGCGAAAGTGTTAAATTTGTTTCCTGAGCTTGTAAAGTTGATTGACCTAAAGGACGCTACTGGG
TTTAGCTCATCCTGGGGCTCTACGTTAAGGACGTTATCAGCGGATGAGAAGCGAATTGCACACTGGCAACATTTGAGATTAATTCGACTTCAAGCACAAAGCGTGACTGA
CTTGTATAAAAGACATCAACAAACATTTCCTGATTGGTTCAAGTCTCGAATGACGGGTCAAGACCAATTGCTCGACGCTACCGAAGAATATGATGATGAGGTGGAGACAA
TGGTCGAGGAAGAGAGGAGTGGAAGACTCAAGACGAAAGCTCAATTGGATAGAGTGCAAGGTCTAGTCGAGCAATTAATGCAGTCACAAGGAGGAGGAACATCGAACTAG
Protein sequenceShow/hide protein sequence
MWSEFRGTPDGTFKYLFKSLISLAIFDFPPFVRARRLPHLRLPPSIRVAVAVVPVLPPLSFRSCPRRAARTAIVLSFLAAVAFRPPPSFAKVLNLFPELVKLIDLKDATG
FSSSWGSTLRTLSADEKRIAHWQHLRLIRLQAQSVTDLYKRHQQTFPDWFKSRMTGQDQLLDATEEYDDEVETMVEEERSGRLKTKAQLDRVQGLVEQLMQSQGGGTSN