; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg004627 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004627
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionE3 ubiquitin-protein ligase COP1-like
Genome locationscaffold9:11392993..11398294
RNA-Seq ExpressionSpg004627
SyntenySpg004627
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PON42276.1 hypothetical protein PanWU01x14_283280 [Parasponia andersonii]1.4e-0735.04Show/hide
Query:  IRFVNELARAKYREMLK-RDFLFERGF-GD-----DLPHFLRYRITNHGWDQFCEKPKSVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFNL
        ++  +E A  +Y E ++ R    E+GF GD     + P F+   IT H W  FC  P+ + + +VREFYAN+ + +     VRGV V  S  AIN+++ L
Subjt:  IRFVNELARAKYREMLK-RDFLFERGF-GD-----DLPHFLRYRITNHGWDQFCEKPKSVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFNL

Query:  QD--FPHAGFNEMVVAP
         D    H+ F E +  P
Subjt:  QD--FPHAGFNEMVVAP

PON46472.1 hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii]6.6e-1024.86Show/hide
Query:  IRFVNELARAKYREMLK-RDFLFERGFGDD-------LPHFLRYRITNHGWDQFCEKPKSVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFN
        ++F  E A  +Y   ++ R    E+GF  D       LP F+   IT H W QFC  P+     +VREFYAN+ D E     VRGV V WS  AIN++F 
Subjt:  IRFVNELARAKYREMLK-RDFLFERGFGDD-------LPHFLRYRITNHGWDQFCEKPKSVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFN

Query:  LQD--FPHAGFNEMV-----------VAPSNDQLNT----------------------------------------------------TVREGRSAH-EP
        L D    H+ F + +           VA +  + N                                                     ++  GR  H E 
Subjt:  LQD--FPHAGFNEMV-----------VAPSNDQLNT----------------------------------------------------TVREGRSAH-EP

Query:  RRCYFDRQGDY------------------------------------RHAQFGPAQRTQE--------AHQGGLVCGIHQNLEQLALSANRQE-------
        R C   + G                                      R AQ GP + TQ+        A        I Q L+ L    ++QE       
Subjt:  RRCYFDRQGDY------------------------------------RHAQFGPAQRTQE--------AHQGGLVCGIHQNLEQLALSANRQE-------

Query:  ----YAERQAQTYWTYAKRRDATLRRALQSNFSKPYQVFPVFPDDL
            +  +Q Q +W Y+K RD  L++ALQ+NF++P   FP FP ++
Subjt:  ----YAERQAQTYWTYAKRRDATLRRALQSNFSKPYQVFPVFPDDL

PON65868.1 hypothetical protein PanWU01x14_113570 [Parasponia andersonii]5.2e-0735.9Show/hide
Query:  IRFVNELARAKYREMLK-RDFLFERGF-GD-----DLPHFLRYRITNHGWDQFCEKPKSVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFNL
        ++F +E A  +Y E ++ R    E+GF GD     + P F+   IT H W  FC  P+     +VREFYAN+ + +     VRGV V  S  AIN+++ L
Subjt:  IRFVNELARAKYREMLK-RDFLFERGF-GD-----DLPHFLRYRITNHGWDQFCEKPKSVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFNL

Query:  QD--FPHAGFNEMVVAP
         D    H+ F E +  P
Subjt:  QD--FPHAGFNEMVVAP

PON90635.1 hypothetical protein TorRG33x02_134920 [Trema orientale]2.4e-0738.6Show/hide
Query:  IRFVNELARAKYREMLKRDFL-FERGFGDD------LPHFLRYRITNHGWDQFCEKPKSVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFNL
        ++F +E A A+Y E +K   L  E+GF  +       P F+   I  H W  FC   +     +VREFYAN+ D E     V+GV V WS  AIN+LF L
Subjt:  IRFVNELARAKYREMLKRDFL-FERGFGDD------LPHFLRYRITNHGWDQFCEKPKSVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFNL

Query:  QD--FPHAGFNEMV
         D    H+ F E V
Subjt:  QD--FPHAGFNEMV

RYE21173.1 hypothetical protein EOP45_09925 [Sphingobacteriaceae bacterium]6.8e-0733.05Show/hide
Query:  FVNELARAKYREMLKRDFLFERGFGDDLPHFLRYRITN----HGWDQFCEKPK-SVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFNLQD--
        F ++ A  +Y  +++R  +FERG        +  +I N      W +FC  P+   N  ++ EFYAN+ D E     VRGV VD S+GAIN+L    D  
Subjt:  FVNELARAKYREMLKRDFLFERGFGDDLPHFLRYRITN----HGWDQFCEKPK-SVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFNLQD--

Query:  FPHAGFNEMVVAPSNDQL
        F + G+ + +  P+ D++
Subjt:  FPHAGFNEMVVAPSNDQL

TrEMBL top hitse value%identityAlignment
A0A2P5B0K0 Uncharacterized protein6.7e-0835.04Show/hide
Query:  IRFVNELARAKYREMLK-RDFLFERGF-GD-----DLPHFLRYRITNHGWDQFCEKPKSVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFNL
        ++  +E A  +Y E ++ R    E+GF GD     + P F+   IT H W  FC  P+ + + +VREFYAN+ + +     VRGV V  S  AIN+++ L
Subjt:  IRFVNELARAKYREMLK-RDFLFERGF-GD-----DLPHFLRYRITNHGWDQFCEKPKSVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFNL

Query:  QD--FPHAGFNEMVVAP
         D    H+ F E +  P
Subjt:  QD--FPHAGFNEMVVAP

A0A2P5BCG4 Uncharacterized protein (Fragment)3.2e-1024.86Show/hide
Query:  IRFVNELARAKYREMLK-RDFLFERGFGDD-------LPHFLRYRITNHGWDQFCEKPKSVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFN
        ++F  E A  +Y   ++ R    E+GF  D       LP F+   IT H W QFC  P+     +VREFYAN+ D E     VRGV V WS  AIN++F 
Subjt:  IRFVNELARAKYREMLK-RDFLFERGFGDD-------LPHFLRYRITNHGWDQFCEKPKSVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFN

Query:  LQD--FPHAGFNEMV-----------VAPSNDQLNT----------------------------------------------------TVREGRSAH-EP
        L D    H+ F + +           VA +  + N                                                     ++  GR  H E 
Subjt:  LQD--FPHAGFNEMV-----------VAPSNDQLNT----------------------------------------------------TVREGRSAH-EP

Query:  RRCYFDRQGDY------------------------------------RHAQFGPAQRTQE--------AHQGGLVCGIHQNLEQLALSANRQE-------
        R C   + G                                      R AQ GP + TQ+        A        I Q L+ L    ++QE       
Subjt:  RRCYFDRQGDY------------------------------------RHAQFGPAQRTQE--------AHQGGLVCGIHQNLEQLALSANRQE-------

Query:  ----YAERQAQTYWTYAKRRDATLRRALQSNFSKPYQVFPVFPDDL
            +  +Q Q +W Y+K RD  L++ALQ+NF++P   FP FP ++
Subjt:  ----YAERQAQTYWTYAKRRDATLRRALQSNFSKPYQVFPVFPDDL

A0A2P5CXV1 Uncharacterized protein2.5e-0735.9Show/hide
Query:  IRFVNELARAKYREMLK-RDFLFERGF-GD-----DLPHFLRYRITNHGWDQFCEKPKSVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFNL
        ++F +E A  +Y E ++ R    E+GF GD     + P F+   IT H W  FC  P+     +VREFYAN+ + +     VRGV V  S  AIN+++ L
Subjt:  IRFVNELARAKYREMLK-RDFLFERGF-GD-----DLPHFLRYRITNHGWDQFCEKPKSVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFNL

Query:  QD--FPHAGFNEMVVAP
         D    H+ F E +  P
Subjt:  QD--FPHAGFNEMVVAP

A0A2P5EYL5 Uncharacterized protein1.1e-0738.6Show/hide
Query:  IRFVNELARAKYREMLKRDFL-FERGFGDD------LPHFLRYRITNHGWDQFCEKPKSVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFNL
        ++F +E A A+Y E +K   L  E+GF  +       P F+   I  H W  FC   +     +VREFYAN+ D E     V+GV V WS  AIN+LF L
Subjt:  IRFVNELARAKYREMLKRDFL-FERGFGDD------LPHFLRYRITNHGWDQFCEKPKSVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFNL

Query:  QD--FPHAGFNEMV
         D    H+ F E V
Subjt:  QD--FPHAGFNEMV

A0A4Q3ENY7 Uncharacterized protein3.3e-0733.05Show/hide
Query:  FVNELARAKYREMLKRDFLFERGFGDDLPHFLRYRITN----HGWDQFCEKPK-SVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFNLQD--
        F ++ A  +Y  +++R  +FERG        +  +I N      W +FC  P+   N  ++ EFYAN+ D E     VRGV VD S+GAIN+L    D  
Subjt:  FVNELARAKYREMLKRDFLFERGFGDDLPHFLRYRITN----HGWDQFCEKPK-SVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFNLQD--

Query:  FPHAGFNEMVVAPSNDQL
        F + G+ + +  P+ D++
Subjt:  FPHAGFNEMVVAPSNDQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTTTATTCGCTTCGTCAATGAACTTGCCAGAGCAAAATACCGGGAGATGCTAAAAAGGGACTTCTTGTTTGAAAGGGGATTCGGTGATGACTTGCCTCATTTTCT
ACGTTATAGAATTACAAACCACGGATGGGATCAGTTTTGCGAGAAGCCAAAATCGGTGAATTCAAACATTGTTCGTGAATTCTATGCGAACATAGATGATCAAGAGGGAT
TTCAAGCCATGGTCCGAGGGGTGGCTGTCGATTGGAGCCTAGGAGCGATAAATTCTCTCTTCAACCTCCAAGATTTTCCACATGCCGGATTTAATGAGATGGTGGTGGCA
CCATCTAACGATCAATTGAACACGACTGTCAGGGAGGGCAGGAGTGCCCACGAGCCCAGAAGATGTTATTTTGATCGACAAGGGGATTATAGACATGCCCAATTTGGCCC
GGCTCAGCGCACGCAGGAGGCACACCAAGGTGGGCTAGTGTGCGGCATCCACCAGAATTTAGAGCAACTGGCACTTTCAGCCAATAGGCAAGAGTATGCCGAGAGGCAGG
CTCAAACCTACTGGACTTATGCTAAAAGGAGGGATGCCACCCTAAGGAGGGCCTTGCAATCCAATTTTTCAAAACCTTATCAGGTCTTCCCTGTTTTCCCCGATGACCTG
TTTAATCCCTGGATTCCGCCGCCGCCAGTAGAAAGAGAAGAAGAGGAGGAAGATGAGCAGACATTTCTTCTAGCCTGGTCATCGCTGCGGCAAGAAGATTCTGAGGTAAA
GGTTGAAGGAAATAATGCTGAGCGACTTGAGGGAGCAAAATATGTGCTCCGGCAAAATTTAGTAAAAGTTTGGCAAGATAGTTTGTGCTTAATGTACTCTTGTTGTGGCA
ATTCGATAATGAAAGATCTGACTCGCTTTGTTTATGGAAGTAGAAGTTCTGCTGTGAATCTGTGGTGTTGTGTTCATTTCAGTGCTCCCTCATCCCATCGTTTCGCTTCA
CCAACTCTTGAGAGTCCCATTGATTTTCAGTCGACGTCGAACTCCAAGGCTACCAACATCGTCGTTCTCACGAAATCGACCCTCTCTGATATCTCTGCAATTTCCATCCA
CTTCACTGTCCTGCGTCCACTAATTAACTACTACTCTATGGCATGGAAGATATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTTTATTCGCTTCGTCAATGAACTTGCCAGAGCAAAATACCGGGAGATGCTAAAAAGGGACTTCTTGTTTGAAAGGGGATTCGGTGATGACTTGCCTCATTTTCT
ACGTTATAGAATTACAAACCACGGATGGGATCAGTTTTGCGAGAAGCCAAAATCGGTGAATTCAAACATTGTTCGTGAATTCTATGCGAACATAGATGATCAAGAGGGAT
TTCAAGCCATGGTCCGAGGGGTGGCTGTCGATTGGAGCCTAGGAGCGATAAATTCTCTCTTCAACCTCCAAGATTTTCCACATGCCGGATTTAATGAGATGGTGGTGGCA
CCATCTAACGATCAATTGAACACGACTGTCAGGGAGGGCAGGAGTGCCCACGAGCCCAGAAGATGTTATTTTGATCGACAAGGGGATTATAGACATGCCCAATTTGGCCC
GGCTCAGCGCACGCAGGAGGCACACCAAGGTGGGCTAGTGTGCGGCATCCACCAGAATTTAGAGCAACTGGCACTTTCAGCCAATAGGCAAGAGTATGCCGAGAGGCAGG
CTCAAACCTACTGGACTTATGCTAAAAGGAGGGATGCCACCCTAAGGAGGGCCTTGCAATCCAATTTTTCAAAACCTTATCAGGTCTTCCCTGTTTTCCCCGATGACCTG
TTTAATCCCTGGATTCCGCCGCCGCCAGTAGAAAGAGAAGAAGAGGAGGAAGATGAGCAGACATTTCTTCTAGCCTGGTCATCGCTGCGGCAAGAAGATTCTGAGGTAAA
GGTTGAAGGAAATAATGCTGAGCGACTTGAGGGAGCAAAATATGTGCTCCGGCAAAATTTAGTAAAAGTTTGGCAAGATAGTTTGTGCTTAATGTACTCTTGTTGTGGCA
ATTCGATAATGAAAGATCTGACTCGCTTTGTTTATGGAAGTAGAAGTTCTGCTGTGAATCTGTGGTGTTGTGTTCATTTCAGTGCTCCCTCATCCCATCGTTTCGCTTCA
CCAACTCTTGAGAGTCCCATTGATTTTCAGTCGACGTCGAACTCCAAGGCTACCAACATCGTCGTTCTCACGAAATCGACCCTCTCTGATATCTCTGCAATTTCCATCCA
CTTCACTGTCCTGCGTCCACTAATTAACTACTACTCTATGGCATGGAAGATATGA
Protein sequenceShow/hide protein sequence
MSFIRFVNELARAKYREMLKRDFLFERGFGDDLPHFLRYRITNHGWDQFCEKPKSVNSNIVREFYANIDDQEGFQAMVRGVAVDWSLGAINSLFNLQDFPHAGFNEMVVA
PSNDQLNTTVREGRSAHEPRRCYFDRQGDYRHAQFGPAQRTQEAHQGGLVCGIHQNLEQLALSANRQEYAERQAQTYWTYAKRRDATLRRALQSNFSKPYQVFPVFPDDL
FNPWIPPPPVEREEEEEDEQTFLLAWSSLRQEDSEVKVEGNNAERLEGAKYVLRQNLVKVWQDSLCLMYSCCGNSIMKDLTRFVYGSRSSAVNLWCCVHFSAPSSHRFAS
PTLESPIDFQSTSNSKATNIVVLTKSTLSDISAISIHFTVLRPLINYYSMAWKI