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Spg004641 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004641
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein
Genome locationscaffold9:9685488..9689278
RNA-Seq ExpressionSpg004641
SyntenySpg004641
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050106.1 retrotransposon protein [Cucumis melo var. makuwa]3.6e-2359.22Show/hide
Query:  SRPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYPTEWKYKCCMRILG
        SRPS K+RR+   D +DTFR  MR  S +I KIA   + K EIES+  K+LY +LQ+IPGMD+DD L+VAE+LL D     +FLDYP EWKY+ CMRILG
Subjt:  SRPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYPTEWKYKCCMRILG

Query:  RQP
        RQP
Subjt:  RQP

KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]6.1e-2359.8Show/hide
Query:  RPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYPTEWKYKCCMRILGR
        RPS K+RR    D +DTFR  MR  S +I KIA   + K EIES+  K+LY ELQ+IPGMD+DD L+VAE+LL D     +FLDYP EWKY+ CMRILGR
Subjt:  RPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYPTEWKYKCCMRILGR

Query:  QP
        QP
Subjt:  QP

KAA0067273.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-1354.02Show/hide
Query:  SRPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYP
        S+PS K+RR+   D +DTFR  MR  S +I KIA   + K EIES+  K+LY ELQ+IPGMD+DD L+V E+LL D     +FLDYP
Subjt:  SRPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYP

TYK07921.1 hypothetical protein E5676_scaffold265G00330 [Cucumis melo var. makuwa]2.7e-1556.82Show/hide
Query:  SRPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYPT
        SRPS K+RR+   D +DTFR  MR  S +I KIA   + K EIES+  K+LY ELQ+IPGMD+DD L+VAE+LL D     +FLDYPT
Subjt:  SRPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYPT

XP_008460440.1 PREDICTED: uncharacterized protein LOC103499248 [Cucumis melo]1.1e-1354.02Show/hide
Query:  SRPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYP
        S+PS K+RR+   D +DTFR  MR  S +I KIA   + K EIES+  K+LY ELQ+IPGMD+DD L+V E+LL D     +FLDYP
Subjt:  SRPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYP

TrEMBL top hitse value%identityAlignment
A0A1S3CC17 uncharacterized protein LOC1034992485.6e-1454.02Show/hide
Query:  SRPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYP
        S+PS K+RR+   D +DTFR  MR  S +I KIA   + K EIES+  K+LY ELQ+IPGMD+DD L+V E+LL D     +FLDYP
Subjt:  SRPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYP

A0A5A7U7F7 Retrotransposon protein1.7e-2359.22Show/hide
Query:  SRPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYPTEWKYKCCMRILG
        SRPS K+RR+   D +DTFR  MR  S +I KIA   + K EIES+  K+LY +LQ+IPGMD+DD L+VAE+LL D     +FLDYP EWKY+ CMRILG
Subjt:  SRPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYPTEWKYKCCMRILG

Query:  RQP
        RQP
Subjt:  RQP

A0A5A7VG45 Retrotransposon protein2.9e-2359.8Show/hide
Query:  RPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYPTEWKYKCCMRILGR
        RPS K+RR    D +DTFR  MR  S +I KIA   + K EIES+  K+LY ELQ+IPGMD+DD L+VAE+LL D     +FLDYP EWKY+ CMRILGR
Subjt:  RPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYPTEWKYKCCMRILGR

Query:  QP
        QP
Subjt:  QP

A0A5A7VGQ0 Retrotransposon protein5.6e-1454.02Show/hide
Query:  SRPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYP
        S+PS K+RR+   D +DTFR  MR  S +I KIA   + K EIES+  K+LY ELQ+IPGMD+DD L+V E+LL D     +FLDYP
Subjt:  SRPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYP

A0A5D3C7T4 Uncharacterized protein1.3e-1556.82Show/hide
Query:  SRPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYPT
        SRPS K+RR+   D +DTFR  MR  S +I KIA   + K EIES+  K+LY ELQ+IPGMD+DD L+VAE+LL D     +FLDYPT
Subjt:  SRPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYPT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTTTTATGCTCCATCTTTTCATCGTTTCCTTCTCCCTTCACCATTCCTCTCCTTGCCAAAGAAGCCCTAACCCTTGCTCTTCGTCTTCCACTCTCTCTTCCTCCCT
TCTCTCCATTAGTATGTCGCCAGAAAATGAGCTATGTAACAGATCGAACATTGGATCGATTGGAACGAGGAACGAGTGGGATTTGTTGACTCGGGTTTGTGTTCTCTCCG
CCCTGTCTCATTTTCTCGTTTTTCTGTCCATTCTGAGATGGGATTTTTGTTCGTCTCTAATTGTTGCTGATTTGAACCCGTTTTTTTCACTCTCTGCCTCTCGTTCCTCT
GTTTTTTTACATGCGGTATTTGCTAACGACGAAGAGCGGATTCTGGCGGGCATTGGAGTGGGGAGGGGGATTGTGAAGCATGTAGTGGACGTGATTCCATCTTGTCGCTC
CATAAACTCGACCCTCTCTCTTGCTGCCTCCAAATTTCCATCAATTTTCTTGTATCGTGGCTTCCTCCCATTCAAAAAAAGTGTTCTCTGTTCTGATTGTGAGGTAGCGT
CTGAGGCCTGGTATGAGGGAGATGAGGTTTACCTTCTAACTAATGCCTTTGCTTTGTGTTCCTTTTCTTCTGTTTATCTCCAATGTCTTTATGGTACGTGGTCTACTCTT
GAATGTGCATTTCATATGTCCATGATCACGAATCCTAGAGGTCTTCTTTACTCATACTCTAGGCCAAGCCGTAAGAGGAGGCGCACAGTACCAGCAGACGCTGTCGATAC
ATTTCGCACGGAGATGCGTTATGTGTCCACGCAAATCGAGAAGATCGCACTCTTGCCTCAACATAAGGATGAAATAGAGTCAGCTCGACGTAAACAATTGTATGGGGAAC
TACAGTCTATCCCGGGAATGGACATGGACGATTTTTTGCTTGTGGCCGAGACTCTGTTGGCTGATGACAAGAAATTTCGCTCATTCCTCGACTACCCTACTGAATGGAAG
TATAAGTGTTGCATGCGTATCTTGGGAAGACAGCCATGA
mRNA sequenceShow/hide mRNA sequence
ATGCGTTTTATGCTCCATCTTTTCATCGTTTCCTTCTCCCTTCACCATTCCTCTCCTTGCCAAAGAAGCCCTAACCCTTGCTCTTCGTCTTCCACTCTCTCTTCCTCCCT
TCTCTCCATTAGTATGTCGCCAGAAAATGAGCTATGTAACAGATCGAACATTGGATCGATTGGAACGAGGAACGAGTGGGATTTGTTGACTCGGGTTTGTGTTCTCTCCG
CCCTGTCTCATTTTCTCGTTTTTCTGTCCATTCTGAGATGGGATTTTTGTTCGTCTCTAATTGTTGCTGATTTGAACCCGTTTTTTTCACTCTCTGCCTCTCGTTCCTCT
GTTTTTTTACATGCGGTATTTGCTAACGACGAAGAGCGGATTCTGGCGGGCATTGGAGTGGGGAGGGGGATTGTGAAGCATGTAGTGGACGTGATTCCATCTTGTCGCTC
CATAAACTCGACCCTCTCTCTTGCTGCCTCCAAATTTCCATCAATTTTCTTGTATCGTGGCTTCCTCCCATTCAAAAAAAGTGTTCTCTGTTCTGATTGTGAGGTAGCGT
CTGAGGCCTGGTATGAGGGAGATGAGGTTTACCTTCTAACTAATGCCTTTGCTTTGTGTTCCTTTTCTTCTGTTTATCTCCAATGTCTTTATGGTACGTGGTCTACTCTT
GAATGTGCATTTCATATGTCCATGATCACGAATCCTAGAGGTCTTCTTTACTCATACTCTAGGCCAAGCCGTAAGAGGAGGCGCACAGTACCAGCAGACGCTGTCGATAC
ATTTCGCACGGAGATGCGTTATGTGTCCACGCAAATCGAGAAGATCGCACTCTTGCCTCAACATAAGGATGAAATAGAGTCAGCTCGACGTAAACAATTGTATGGGGAAC
TACAGTCTATCCCGGGAATGGACATGGACGATTTTTTGCTTGTGGCCGAGACTCTGTTGGCTGATGACAAGAAATTTCGCTCATTCCTCGACTACCCTACTGAATGGAAG
TATAAGTGTTGCATGCGTATCTTGGGAAGACAGCCATGA
Protein sequenceShow/hide protein sequence
MRFMLHLFIVSFSLHHSSPCQRSPNPCSSSSTLSSSLLSISMSPENELCNRSNIGSIGTRNEWDLLTRVCVLSALSHFLVFLSILRWDFCSSLIVADLNPFFSLSASRSS
VFLHAVFANDEERILAGIGVGRGIVKHVVDVIPSCRSINSTLSLAASKFPSIFLYRGFLPFKKSVLCSDCEVASEAWYEGDEVYLLTNAFALCSFSSVYLQCLYGTWSTL
ECAFHMSMITNPRGLLYSYSRPSRKRRRTVPADAVDTFRTEMRYVSTQIEKIALLPQHKDEIESARRKQLYGELQSIPGMDMDDFLLVAETLLADDKKFRSFLDYPTEWK
YKCCMRILGRQP