; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg004672 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004672
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPMD domain-containing protein
Genome locationscaffold5:22415676..22420483
RNA-Seq ExpressionSpg004672
SyntenySpg004672
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0050333.1 hypothetical protein E6C27_scaffold88G00590 [Cucumis melo var. makuwa]1.6e-0427.62Show/hide
Query:  SSFHPPSRSKYFEEYEARELIHKGASILWNVNIQGRNK-----------------------------------------------------AEVDGETSC
        ++F     S YF EYEARELIH GA I W+ N+Q RNK                                                      EV    S 
Subjt:  SSFHPPSRSKYFEEYEARELIHKGASILWNVNIQGRNK-----------------------------------------------------AEVDGETSC

Query:  SSSHDHHWKRPPKKTNVSSTNVDNSFDEVPRASQFPSPPPI------LGSVEEQRNEESLTSPNVFDNTVKHMSDSKALSNEKVISPNPPPKTSESHQQN
        SS  D HWKRP KK  VS  + D        A + P  PP+      L  + E  ++ESLT P+  D+  + +  SK   N+       P    E  ++ 
Subjt:  SSSHDHHWKRPPKKTNVSSTNVDNSFDEVPRASQFPSPPPI------LGSVEEQRNEESLTSPNVFDNTVKHMSDSKALSNEKVISPNPPPKTSESHQQN

Query:  QKRAIYVDLE
        +      DLE
Subjt:  QKRAIYVDLE

KAA0059654.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.8e-0530.06Show/hide
Query:  SSFHPPSRSKYFEEYEARELIHKGASILWNVNIQGRNKAE---------------------------------------------VDGETSCSSSHDHHW
        ++F     S +F EYEARELIH GA I W+ N+Q RNK E                                             V    S SS  D HW
Subjt:  SSFHPPSRSKYFEEYEARELIHKGASILWNVNIQGRNKAE---------------------------------------------VDGETSCSSSHDHHW

Query:  KRPPKKTNVSSTNVDNSFDEVPRASQFPSPPPILGSVE---EQRNEESLTSPNVFDNTVKHMSDSKALSNEKV
        KRP KK  VS  N D            P   P+   +E   E  ++ESLT P+  D+  + +  SK   N+ V
Subjt:  KRPPKKTNVSSTNVDNSFDEVPRASQFPSPPPILGSVE---EQRNEESLTSPNVFDNTVKHMSDSKALSNEKV

TYK03059.1 hypothetical protein E5676_scaffold46G001590 [Cucumis melo var. makuwa]1.8e-0836.88Show/hide
Query:  SKYFEEYEARELIHKGASILWNVNIQGRNKAE--VDGETSC--------------------------SSSHDHHWKRPPKKTNVSSTNVDNSFDEVPRAS
        S YF EYE RELIH GA I W+ N+Q RNK E  VD   S                           SS  D HWKRP KK +VS  + D       R  
Subjt:  SKYFEEYEARELIHKGASILWNVNIQGRNKAE--VDGETSC--------------------------SSSHDHHWKRPPKKTNVSSTNVDNSFDEVPRAS

Query:  QFPSPPPILGSVE---EQRNEESLTSPNVFDNTVKHMSDSK
          P   P+   +E   E  ++ESL  P+V D+T+K +  SK
Subjt:  QFPSPPPILGSVE---EQRNEESLTSPNVFDNTVKHMSDSK

TrEMBL top hitse value%identityAlignment
A0A5A7U349 PMD domain-containing protein7.5e-0527.62Show/hide
Query:  SSFHPPSRSKYFEEYEARELIHKGASILWNVNIQGRNK-----------------------------------------------------AEVDGETSC
        ++F     S YF EYEARELIH GA I W+ N+Q RNK                                                      EV    S 
Subjt:  SSFHPPSRSKYFEEYEARELIHKGASILWNVNIQGRNK-----------------------------------------------------AEVDGETSC

Query:  SSSHDHHWKRPPKKTNVSSTNVDNSFDEVPRASQFPSPPPI------LGSVEEQRNEESLTSPNVFDNTVKHMSDSKALSNEKVISPNPPPKTSESHQQN
        SS  D HWKRP KK  VS  + D        A + P  PP+      L  + E  ++ESLT P+  D+  + +  SK   N+       P    E  ++ 
Subjt:  SSSHDHHWKRPPKKTNVSSTNVDNSFDEVPRASQFPSPPPI------LGSVEEQRNEESLTSPNVFDNTVKHMSDSKALSNEKVISPNPPPKTSESHQQN

Query:  QKRAIYVDLE
        +      DLE
Subjt:  QKRAIYVDLE

A0A5A7UX29 Putative mitochondrial protein8.9e-0630.06Show/hide
Query:  SSFHPPSRSKYFEEYEARELIHKGASILWNVNIQGRNKAE---------------------------------------------VDGETSCSSSHDHHW
        ++F     S +F EYEARELIH GA I W+ N+Q RNK E                                             V    S SS  D HW
Subjt:  SSFHPPSRSKYFEEYEARELIHKGASILWNVNIQGRNKAE---------------------------------------------VDGETSCSSSHDHHW

Query:  KRPPKKTNVSSTNVDNSFDEVPRASQFPSPPPILGSVE---EQRNEESLTSPNVFDNTVKHMSDSKALSNEKV
        KRP KK  VS  N D            P   P+   +E   E  ++ESLT P+  D+  + +  SK   N+ V
Subjt:  KRPPKKTNVSSTNVDNSFDEVPRASQFPSPPPILGSVE---EQRNEESLTSPNVFDNTVKHMSDSKALSNEKV

A0A5D3BYA2 Uncharacterized protein8.6e-0936.88Show/hide
Query:  SKYFEEYEARELIHKGASILWNVNIQGRNKAE--VDGETSC--------------------------SSSHDHHWKRPPKKTNVSSTNVDNSFDEVPRAS
        S YF EYE RELIH GA I W+ N+Q RNK E  VD   S                           SS  D HWKRP KK +VS  + D       R  
Subjt:  SKYFEEYEARELIHKGASILWNVNIQGRNKAE--VDGETSC--------------------------SSSHDHHWKRPPKKTNVSSTNVDNSFDEVPRAS

Query:  QFPSPPPILGSVE---EQRNEESLTSPNVFDNTVKHMSDSK
          P   P+   +E   E  ++ESL  P+V D+T+K +  SK
Subjt:  QFPSPPPILGSVE---EQRNEESLTSPNVFDNTVKHMSDSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTTGTCGGTATCTTTGCTGCAACGTCCTAACATTTCTGGATCTGGTACTCCAAATTCTCAATAGAACGCTTGATCTCGAGTCAGAAGCTTCAATGGATTCTTGGAG
CTTGAAGTCTTCTAGTCTTGAAGGAGTCTTCAATCTTCCAGTCTTGAAGGAGTCTTCAGGAACAATCGAGTCAAATTGCTCTCATTGCACAATTGATATTTGTTTGCCAA
CCAGTATTGAATTCCTTCACAGTAGCTTTCATCCACCATCTAGATCAAAATACTTTGAAGAGTACGAGGCTCGTGAACTGATCCACAAGGGTGCATCTATCCTATGGAAT
GTGAATATTCAAGGCAGAAACAAGGCAGAAGTGGATGGTGAAACAAGTTGCAGCAGCTCTCACGATCATCATTGGAAGAGACCACCCAAGAAAACAAATGTGTCTTCCAC
GAATGTAGACAACTCTTTTGATGAAGTTCCAAGGGCTTCTCAATTTCCTAGTCCTCCTCCAATTTTGGGTAGTGTGGAGGAGCAACGCAACGAGGAATCATTAACGAGTC
CAAATGTGTTTGACAATACTGTGAAACATATGAGTGACTCCAAGGCGTTGTCCAACGAGAAAGTCATAAGCCCTAATCCTCCTCCTAAGACTTCTGAAAGTCATCAGCAG
AATCAAAAAAGAGCAATCTATGTGGATCTTGAAGCTTCCCATTATTGTGCCAACACATTGATCTCTGACCATCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTTGTCGGTATCTTTGCTGCAACGTCCTAACATTTCTGGATCTGGTACTCCAAATTCTCAATAGAACGCTTGATCTCGAGTCAGAAGCTTCAATGGATTCTTGGAG
CTTGAAGTCTTCTAGTCTTGAAGGAGTCTTCAATCTTCCAGTCTTGAAGGAGTCTTCAGGAACAATCGAGTCAAATTGCTCTCATTGCACAATTGATATTTGTTTGCCAA
CCAGTATTGAATTCCTTCACAGTAGCTTTCATCCACCATCTAGATCAAAATACTTTGAAGAGTACGAGGCTCGTGAACTGATCCACAAGGGTGCATCTATCCTATGGAAT
GTGAATATTCAAGGCAGAAACAAGGCAGAAGTGGATGGTGAAACAAGTTGCAGCAGCTCTCACGATCATCATTGGAAGAGACCACCCAAGAAAACAAATGTGTCTTCCAC
GAATGTAGACAACTCTTTTGATGAAGTTCCAAGGGCTTCTCAATTTCCTAGTCCTCCTCCAATTTTGGGTAGTGTGGAGGAGCAACGCAACGAGGAATCATTAACGAGTC
CAAATGTGTTTGACAATACTGTGAAACATATGAGTGACTCCAAGGCGTTGTCCAACGAGAAAGTCATAAGCCCTAATCCTCCTCCTAAGACTTCTGAAAGTCATCAGCAG
AATCAAAAAAGAGCAATCTATGTGGATCTTGAAGCTTCCCATTATTGTGCCAACACATTGATCTCTGACCATCGATGA
Protein sequenceShow/hide protein sequence
MSCRYLCCNVLTFLDLVLQILNRTLDLESEASMDSWSLKSSSLEGVFNLPVLKESSGTIESNCSHCTIDICLPTSIEFLHSSFHPPSRSKYFEEYEARELIHKGASILWN
VNIQGRNKAEVDGETSCSSSHDHHWKRPPKKTNVSSTNVDNSFDEVPRASQFPSPPPILGSVEEQRNEESLTSPNVFDNTVKHMSDSKALSNEKVISPNPPPKTSESHQQ
NQKRAIYVDLEASHYCANTLISDHR