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Spg004688 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004688
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold5:22495006..22503067
RNA-Seq ExpressionSpg004688
SyntenySpg004688
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041121.1 hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa]9.8e-1840.41Show/hide
Query:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILG-----------------------PRGNRSSLQTGELDKT----------------------
        VNL F +    +    +ST FSSK GG LVFS  LSIL                        PRGNR SLQTGELD T                      
Subjt:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILG-----------------------PRGNRSSLQTGELDKT----------------------

Query:  ----------------VEIELPVPDTLPTSAESFRSSSSTWLELYIESVTFQTRLCQGYTMCML-----KGFRGFRCVVFRIECFISMISMFI
                        VEIELPVPD LPTSAES  S+SSTWLELY ESV  +    +   + ++     +GFRGF CVVF +E  IS I MFI
Subjt:  ----------------VEIELPVPDTLPTSAESFRSSSSTWLELYIESVTFQTRLCQGYTMCML-----KGFRGFRCVVFRIECFISMISMFI

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]3.6e-2067.78Show/hide
Query:  QPVNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILGPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWLELYIESV
        QP+ + F + + L     EST F SK+GG LVFS  LSIL PRGNR +L TG+LDKTVEIELPVPDTLPTSAES +S+SSTWLELY ESV
Subjt:  QPVNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILGPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWLELYIESV

KAA0054353.1 uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa]1.7e-2248.52Show/hide
Query:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSIL------------GPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAE
        VNLWF +    +     STGFSSK GG LVFS  LSIL             PRGN  SLQTGELDKT                 VEIELPV DTL TSAE
Subjt:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSIL------------GPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAE

Query:  SFRSSSSTWLELYIES------------VTFQTRLCQGYTMCMLKGFRGFRCVVFRIECFISMISMFIR
        S  S+SSTWL+LY ES            V   +R+C        +GFRGFRCVVF +E  IS I MFIR
Subjt:  SFRSSSSTWLELYIES------------VTFQTRLCQGYTMCMLKGFRGFRCVVFRIECFISMISMFIR

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]7.5e-1837.71Show/hide
Query:  IHSFP--YWEHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILG-------------
        +H FP    EHF+ERVK EEEEEFRGLRLKKIGKSSCKA+HCRI       W             STGFSSK  G LVFS  LSIL              
Subjt:  IHSFP--YWEHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILG-------------

Query:  ----------PRGNRSSLQTGELDK---------------------------------------------------------------------------
                  PRGNRSSLQTG+LDK                                                                           
Subjt:  ----------PRGNRSSLQTGELDK---------------------------------------------------------------------------

Query:  ----TVEIELPVPDTLPTSAESFRSSSSTWLELYIE
            ++EIEL VPDTLPTSAES  S+SSTWLE   E
Subjt:  ----TVEIELPVPDTLPTSAESFRSSSSTWLELYIE

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]8.9e-1957.02Show/hide
Query:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSI-----------LGPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESFR
        VNLWF +    +    +STGFSSK GG LV S  LSI           LGPRGNR SLQTGELDKTV                IELPVPDTLPTSAES  
Subjt:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSI-----------LGPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESFR

Query:  SSSSTWLELYIESV
        S+SSTWLELY ESV
Subjt:  SSSSTWLELYIESV

TrEMBL top hitse value%identityAlignment
A0A5A7THH5 Uncharacterized protein4.8e-1840.41Show/hide
Query:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILG-----------------------PRGNRSSLQTGELDKT----------------------
        VNL F +    +    +ST FSSK GG LVFS  LSIL                        PRGNR SLQTGELD T                      
Subjt:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILG-----------------------PRGNRSSLQTGELDKT----------------------

Query:  ----------------VEIELPVPDTLPTSAESFRSSSSTWLELYIESVTFQTRLCQGYTMCML-----KGFRGFRCVVFRIECFISMISMFI
                        VEIELPVPD LPTSAES  S+SSTWLELY ESV  +    +   + ++     +GFRGF CVVF +E  IS I MFI
Subjt:  ----------------VEIELPVPDTLPTSAESFRSSSSTWLELYIESVTFQTRLCQGYTMCML-----KGFRGFRCVVFRIECFISMISMFI

A0A5A7UAH6 CCHC-type domain-containing protein1.7e-2067.78Show/hide
Query:  QPVNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILGPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWLELYIESV
        QP+ + F + + L     EST F SK+GG LVFS  LSIL PRGNR +L TG+LDKTVEIELPVPDTLPTSAES +S+SSTWLELY ESV
Subjt:  QPVNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILGPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWLELYIESV

A0A5A7UEC1 Uncharacterized protein8.4e-2348.52Show/hide
Query:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSIL------------GPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAE
        VNLWF +    +     STGFSSK GG LVFS  LSIL             PRGN  SLQTGELDKT                 VEIELPV DTL TSAE
Subjt:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSIL------------GPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAE

Query:  SFRSSSSTWLELYIES------------VTFQTRLCQGYTMCMLKGFRGFRCVVFRIECFISMISMFIR
        S  S+SSTWL+LY ES            V   +R+C        +GFRGFRCVVF +E  IS I MFIR
Subjt:  SFRSSSSTWLELYIES------------VTFQTRLCQGYTMCMLKGFRGFRCVVFRIECFISMISMFIR

A0A5D3CAC6 Uncharacterized protein3.6e-1837.71Show/hide
Query:  IHSFP--YWEHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILG-------------
        +H FP    EHF+ERVK EEEEEFRGLRLKKIGKSSCKA+HCRI       W             STGFSSK  G LVFS  LSIL              
Subjt:  IHSFP--YWEHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILG-------------

Query:  ----------PRGNRSSLQTGELDK---------------------------------------------------------------------------
                  PRGNRSSLQTG+LDK                                                                           
Subjt:  ----------PRGNRSSLQTGELDK---------------------------------------------------------------------------

Query:  ----TVEIELPVPDTLPTSAESFRSSSSTWLELYIE
            ++EIEL VPDTLPTSAES  S+SSTWLE   E
Subjt:  ----TVEIELPVPDTLPTSAESFRSSSSTWLELYIE

A0A5D3CJX3 CCHC-type domain-containing protein4.3e-1957.02Show/hide
Query:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSI-----------LGPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESFR
        VNLWF +    +    +STGFSSK GG LV S  LSI           LGPRGNR SLQTGELDKTV                IELPVPDTLPTSAES  
Subjt:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSI-----------LGPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESFR

Query:  SSSSTWLELYIESV
        S+SSTWLELY ESV
Subjt:  SSSSTWLELYIESV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTCAGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCCTA
TTGGGAGCACTTTAAGGAGAGAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGAATCT
GTGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGTT
GTTTTGAGCATTCTGGGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGC
TGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACCTTCCAAACCAGGTTATGTCAGGGCTACACCATGTGTATGTTGAAAGGTTTCC
GTGGATTCCGCTGTGTGGTGTTTCGTATAGAATGTTTTATATCAATGATTAGTATGTTTATCAGAGGAACGGGATATACAATAAAGGATGCTGGAACAAAAAAGGATGTA
GATTCTTTTACAGCATGTGTTGGTAGTCAAGCCCTTCGTTGCCAAGTTCTAAGTGGACGTGTCACTGGACAAAAAGAGATCGTATCTACAGAAAAGATTAAGAAAAGAAA
GAAGCAAGCAAAGAAGAAGAAGACAAAATCCACGGTAAGCTTTTCTCCTTCTAAATATGCTTCTGATGCCTATCAATCAATCATAGGAAATTATGCTTCTGATGCATTGC
TTAGCTCGCCTTCCAACTCAAAAGTGGGTTCTGATTTATCTGTACGAATTAAGGGAAGCATGCATGATAACAATGAAAATTATAAGTGCAATATTTTCTACTCCAATTAC
TTCAGGTCAATCTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTCAGGGGCAAGACCGAATGGGGGCTGGGAACATAACAGTACAAGATGGAATTCACTCCTTCCCCTA
TTGGGAGCACTTTAAGGAGAGAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGAATCT
GTGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGTT
GTTTTGAGCATTCTGGGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGC
TGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACCTTCCAAACCAGGTTATGTCAGGGCTACACCATGTGTATGTTGAAAGGTTTCC
GTGGATTCCGCTGTGTGGTGTTTCGTATAGAATGTTTTATATCAATGATTAGTATGTTTATCAGAGGAACGGGATATACAATAAAGGATGCTGGAACAAAAAAGGATGTA
GATTCTTTTACAGCATGTGTTGGTAGTCAAGCCCTTCGTTGCCAAGTTCTAAGTGGACGTGTCACTGGACAAAAAGAGATCGTATCTACAGAAAAGATTAAGAAAAGAAA
GAAGCAAGCAAAGAAGAAGAAGACAAAATCCACGGTAAGCTTTTCTCCTTCTAAATATGCTTCTGATGCCTATCAATCAATCATAGGAAATTATGCTTCTGATGCATTGC
TTAGCTCGCCTTCCAACTCAAAAGTGGGTTCTGATTTATCTGTACGAATTAAGGGAAGCATGCATGATAACAATGAAAATTATAAGTGCAATATTTTCTACTCCAATTAC
TTCAGGTCAATCTTCTGA
Protein sequenceShow/hide protein sequence
MGESGQFADSISLPFQGQDRMGAGNITVQDGIHSFPYWEHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRICVQPVNLWFFIRFELHRRNQESTGFSSKAGGSLVFSV
VLSILGPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWLELYIESVTFQTRLCQGYTMCMLKGFRGFRCVVFRIECFISMISMFIRGTGYTIKDAGTKKDV
DSFTACVGSQALRCQVLSGRVTGQKEIVSTEKIKKRKKQAKKKKTKSTVSFSPSKYASDAYQSIIGNYASDALLSSPSNSKVGSDLSVRIKGSMHDNNENYKCNIFYSNY
FRSIF