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Spg004699 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004699
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold5:22554616..22564551
RNA-Seq ExpressionSpg004699
SyntenySpg004699
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.1e-1756.19Show/hide
Query:  TTPRGTRSSLQTRELDKT-----------------VEIELPVPNTLPMSAESSRSSSSTWFSV--------SIGSTGIVRGDDVCWLHAVFRAKLAGGPG
        T PRG R SLQT ELDKT                 VEIELP+P+TLP SAESS S+SST   +          GS GI+RGDDVCWLHAVFRAK  GGPG
Subjt:  TTPRGTRSSLQTRELDKT-----------------VEIELPVPNTLPMSAESSRSSSSTWFSV--------SIGSTGIVRGDDVCWLHAVFRAKLAGGPG

Query:  GVVSP
        G V P
Subjt:  GVVSP

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.2e-1751.64Show/hide
Query:  PRGTRSSLQTRELDKT-----------------VEIELPVPNTLPMSAESSRSSSSTW---------------------------FSVSIGSTGIVRGDD
        PRG R+SLQT ELDKT                 VEIELPVP+TLP SAESS S+SSTW                           F+VS+GST IVRGD+
Subjt:  PRGTRSSLQTRELDKT-----------------VEIELPVPNTLPMSAESSRSSSSTW---------------------------FSVSIGSTGIVRGDD

Query:  VCWLHAVFRAKLAGGPGGVVSP
        VCWLHAVF AK AGGPGG V P
Subjt:  VCWLHAVFRAKLAGGPGGVVSP

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.5e-1856.6Show/hide
Query:  LSTTPRGTRSSLQTRELDKTVEIELPVPNTLPMSAESSRSSSSTWF-----SVSI-------------------GSTGIVRGDDVCWLHAVFRAKLAGGP
        LS  PRG R +L T +LDKTVEIELPVP+TLP SAESS+S+SSTW      SV +                   GS GIVRGDD+CWLHAVF AK AG P
Subjt:  LSTTPRGTRSSLQTRELDKTVEIELPVPNTLPMSAESSRSSSSTWF-----SVSI-------------------GSTGIVRGDDVCWLHAVFRAKLAGGP

Query:  GGVVSP
        GG V P
Subjt:  GGVVSP

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]3.3e-1852.46Show/hide
Query:  STTPRGTRSSLQTRELDKT---------------VEIELPVPNTLPMSAESSRSSSSTW---------------------------FSVSIGSTGIVRGD
        S  PRG R SLQTRELDKT               V IELPVP+ LP SAESS S+SSTW                           F+VS+GSTGIVRGD
Subjt:  STTPRGTRSSLQTRELDKT---------------VEIELPVPNTLPMSAESSRSSSSTW---------------------------FSVSIGSTGIVRGD

Query:  DVCWLHAVFRAKLAGGPGGVVS
        DVCWLHAVFRAK  GGPGG V+
Subjt:  DVCWLHAVFRAKLAGGPGGVVS

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]1.9e-1850.35Show/hide
Query:  GVQVESEALFDI-VGKLIQ-LSTTPRGTRSSLQTRELDKTV---------------EIELPVPNTLPMSAESSRSSSSTW--------------------
        G  V S+AL  + + KL Q L   PRG R SLQT ELDKTV                IELPVP+TLP SAESS S+SSTW                    
Subjt:  GVQVESEALFDI-VGKLIQ-LSTTPRGTRSSLQTRELDKTV---------------EIELPVPNTLPMSAESSRSSSSTW--------------------

Query:  -------FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVVS
               F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGG V+
Subjt:  -------FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVVS

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase1.0e-1756.19Show/hide
Query:  TTPRGTRSSLQTRELDKT-----------------VEIELPVPNTLPMSAESSRSSSSTWFSV--------SIGSTGIVRGDDVCWLHAVFRAKLAGGPG
        T PRG R SLQT ELDKT                 VEIELP+P+TLP SAESS S+SST   +          GS GI+RGDDVCWLHAVFRAK  GGPG
Subjt:  TTPRGTRSSLQTRELDKT-----------------VEIELPVPNTLPMSAESSRSSSSTWFSV--------SIGSTGIVRGDDVCWLHAVFRAKLAGGPG

Query:  GVVSP
        G V P
Subjt:  GVVSP

A0A5A7U9X4 DNA/RNA polymerases superfamily protein6.0e-1851.64Show/hide
Query:  PRGTRSSLQTRELDKT-----------------VEIELPVPNTLPMSAESSRSSSSTW---------------------------FSVSIGSTGIVRGDD
        PRG R+SLQT ELDKT                 VEIELPVP+TLP SAESS S+SSTW                           F+VS+GST IVRGD+
Subjt:  PRGTRSSLQTRELDKT-----------------VEIELPVPNTLPMSAESSRSSSSTW---------------------------FSVSIGSTGIVRGDD

Query:  VCWLHAVFRAKLAGGPGGVVSP
        VCWLHAVF AK AGGPGG V P
Subjt:  VCWLHAVFRAKLAGGPGGVVSP

A0A5A7UAH6 CCHC-type domain-containing protein1.2e-1856.6Show/hide
Query:  LSTTPRGTRSSLQTRELDKTVEIELPVPNTLPMSAESSRSSSSTWF-----SVSI-------------------GSTGIVRGDDVCWLHAVFRAKLAGGP
        LS  PRG R +L T +LDKTVEIELPVP+TLP SAESS+S+SSTW      SV +                   GS GIVRGDD+CWLHAVF AK AG P
Subjt:  LSTTPRGTRSSLQTRELDKTVEIELPVPNTLPMSAESSRSSSSTWF-----SVSI-------------------GSTGIVRGDDVCWLHAVFRAKLAGGP

Query:  GGVVSP
        GG V P
Subjt:  GGVVSP

A0A5A7UT17 CCHC-type domain-containing protein1.6e-1852.46Show/hide
Query:  STTPRGTRSSLQTRELDKT---------------VEIELPVPNTLPMSAESSRSSSSTW---------------------------FSVSIGSTGIVRGD
        S  PRG R SLQTRELDKT               V IELPVP+ LP SAESS S+SSTW                           F+VS+GSTGIVRGD
Subjt:  STTPRGTRSSLQTRELDKT---------------VEIELPVPNTLPMSAESSRSSSSTW---------------------------FSVSIGSTGIVRGD

Query:  DVCWLHAVFRAKLAGGPGGVVS
        DVCWLHAVFRAK  GGPGG V+
Subjt:  DVCWLHAVFRAKLAGGPGGVVS

A0A5D3CJX3 CCHC-type domain-containing protein9.2e-1950.35Show/hide
Query:  GVQVESEALFDI-VGKLIQ-LSTTPRGTRSSLQTRELDKTV---------------EIELPVPNTLPMSAESSRSSSSTW--------------------
        G  V S+AL  + + KL Q L   PRG R SLQT ELDKTV                IELPVP+TLP SAESS S+SSTW                    
Subjt:  GVQVESEALFDI-VGKLIQ-LSTTPRGTRSSLQTRELDKTV---------------EIELPVPNTLPMSAESSRSSSSTW--------------------

Query:  -------FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVVS
               F+VS+GSTGIVRGDDVCWLHAVFRAK  GGPGG V+
Subjt:  -------FSVSIGSTGIVRGDDVCWLHAVFRAKLAGGPGGVVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTACTTTAACGATAGTGTCAAAGTTACAGTAACAGATGCTGAAAAAATATTCTTAGAAATACAGTTTGAGTCGGATGAAGATGCGGTGAAGGTAGCACTCGCATATTT
CATCGAGCTAGCAATGTTTGGGCGGGAGAGGAAGCAGAAGTTCAATTGGTCTTTGCTAGTCGTGACTAGAGAGACTGGTCGATTGGAAAGATATAGTCTTTACGGCTTTC
CACATGCTTTTCAGGATGTCGAGGCGGTGAAAAGACCAAAGCAGGGCCTCAAGACTCGAAAACAAACGTCAAAAGGATCAAGAATTGAAGCAGCCAAACAAGGAAGACCC
GAGAGTTTTACTATGCTTAAATCAAGGGTGATAGTGCAATTGGTGCCAAGCGATGCAGAACACATGTGTCGTATCGTTTTGCCGCCACAACTAGAAGCTCCTGTTTTGCC
ACCACAACTAGAGGCCCATGTTTTGCTGCCACAACCAGAACCAATGAATGATGAAAACCTAGATCATCCTGTGGGGAGTGATAGAGGGTCAGAGGAAGCTGGTTTGGATA
GGGGTTCACCGACAAAGGATGCGGATATGGTTGGACTCGATGAACAATCGACACATGACGGTCTACCTAAAGGCGGTCAATTGGTGGTTGATCCTACCAAGTATTTGGGT
CCCAACCGTAGTGCAGTAGGTGATGAACCATCTGAGAAAGGAAAGGACCATGTCGTGGAGGAGGGGCATGGTGGGGTTTTCAAAAGATACGATGCATTCTGGGGTGTACA
AGTTGAATCAGAAGCTCTATTTGATATTGTTGGAAAGCTTATTCAATTATCTACAACGCCAAGAGGAACTAGGTCGAGTCTACAAACCAGGGAACTAGATAAGACGGTAG
AGATCGAGCTCCCGGTGCCTAATACACTGCCAATGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGT
GACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGTGGTGTCTCCGGGTCTTGAACAAAGGGCCCTACCCTCTTTATGGCACGA
GAGGGACTTCTGTTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGCAAGATCAAGGTCCTTTTGGTTGCTGGATTTTTCTGCAAACATCAAGGGAAAA
GGCGAAACACATCAAGAACGTCATACAAAAATAGGTTGAAGATCGGTGAAGAACGCGGTATCAATCGAGGCCAATTGGAACTGTTCAGCCGCTGTTTTTGCCCAGAATCG
AGCTCCAGACGCAACAGCGTCGGGACGCTTGGCCTACAGCATCTCGACGCTGTCGCGATTTCACCCAGCGAACGGTTGAAATCGCGCCAGCGTCGGGACGCTAAGCCTAC
AGCGTCTCGACGCTGTCGCGATTTCATGCGGCGGTTGTTTTACGTGAAAACGTGTGCTGAAACCCTAATGGGCGGTTTGGTTCGTGCGGTTAGGGTTGAGCTGGGACCGG
TTTGGTCAGGTTCAACCCGGTTCATGGGCGGTTCGGGATTTTCAAGGCCAGTTCGAAGTGGTTCGGGTCGGTTCGTGGATTCTAGACCAATTATGGAGCTGTATATGATG
TAA
mRNA sequenceShow/hide mRNA sequence
ATGTACTTTAACGATAGTGTCAAAGTTACAGTAACAGATGCTGAAAAAATATTCTTAGAAATACAGTTTGAGTCGGATGAAGATGCGGTGAAGGTAGCACTCGCATATTT
CATCGAGCTAGCAATGTTTGGGCGGGAGAGGAAGCAGAAGTTCAATTGGTCTTTGCTAGTCGTGACTAGAGAGACTGGTCGATTGGAAAGATATAGTCTTTACGGCTTTC
CACATGCTTTTCAGGATGTCGAGGCGGTGAAAAGACCAAAGCAGGGCCTCAAGACTCGAAAACAAACGTCAAAAGGATCAAGAATTGAAGCAGCCAAACAAGGAAGACCC
GAGAGTTTTACTATGCTTAAATCAAGGGTGATAGTGCAATTGGTGCCAAGCGATGCAGAACACATGTGTCGTATCGTTTTGCCGCCACAACTAGAAGCTCCTGTTTTGCC
ACCACAACTAGAGGCCCATGTTTTGCTGCCACAACCAGAACCAATGAATGATGAAAACCTAGATCATCCTGTGGGGAGTGATAGAGGGTCAGAGGAAGCTGGTTTGGATA
GGGGTTCACCGACAAAGGATGCGGATATGGTTGGACTCGATGAACAATCGACACATGACGGTCTACCTAAAGGCGGTCAATTGGTGGTTGATCCTACCAAGTATTTGGGT
CCCAACCGTAGTGCAGTAGGTGATGAACCATCTGAGAAAGGAAAGGACCATGTCGTGGAGGAGGGGCATGGTGGGGTTTTCAAAAGATACGATGCATTCTGGGGTGTACA
AGTTGAATCAGAAGCTCTATTTGATATTGTTGGAAAGCTTATTCAATTATCTACAACGCCAAGAGGAACTAGGTCGAGTCTACAAACCAGGGAACTAGATAAGACGGTAG
AGATCGAGCTCCCGGTGCCTAATACACTGCCAATGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTCAGCGTTTCAATAGGGTCAACAGGGATCGTTAGAGGT
GACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGTGGTGTCTCCGGGTCTTGAACAAAGGGCCCTACCCTCTTTATGGCACGA
GAGGGACTTCTGTTTGTTGGTTGGACCTCAAACAGGTTGTTCATTAGAGGAGCACTGCAAGATCAAGGTCCTTTTGGTTGCTGGATTTTTCTGCAAACATCAAGGGAAAA
GGCGAAACACATCAAGAACGTCATACAAAAATAGGTTGAAGATCGGTGAAGAACGCGGTATCAATCGAGGCCAATTGGAACTGTTCAGCCGCTGTTTTTGCCCAGAATCG
AGCTCCAGACGCAACAGCGTCGGGACGCTTGGCCTACAGCATCTCGACGCTGTCGCGATTTCACCCAGCGAACGGTTGAAATCGCGCCAGCGTCGGGACGCTAAGCCTAC
AGCGTCTCGACGCTGTCGCGATTTCATGCGGCGGTTGTTTTACGTGAAAACGTGTGCTGAAACCCTAATGGGCGGTTTGGTTCGTGCGGTTAGGGTTGAGCTGGGACCGG
TTTGGTCAGGTTCAACCCGGTTCATGGGCGGTTCGGGATTTTCAAGGCCAGTTCGAAGTGGTTCGGGTCGGTTCGTGGATTCTAGACCAATTATGGAGCTGTATATGATG
TAA
Protein sequenceShow/hide protein sequence
MYFNDSVKVTVTDAEKIFLEIQFESDEDAVKVALAYFIELAMFGRERKQKFNWSLLVVTRETGRLERYSLYGFPHAFQDVEAVKRPKQGLKTRKQTSKGSRIEAAKQGRP
ESFTMLKSRVIVQLVPSDAEHMCRIVLPPQLEAPVLPPQLEAHVLLPQPEPMNDENLDHPVGSDRGSEEAGLDRGSPTKDADMVGLDEQSTHDGLPKGGQLVVDPTKYLG
PNRSAVGDEPSEKGKDHVVEEGHGGVFKRYDAFWGVQVESEALFDIVGKLIQLSTTPRGTRSSLQTRELDKTVEIELPVPNTLPMSAESSRSSSSTWFSVSIGSTGIVRG
DDVCWLHAVFRAKLAGGPGGVVSPGLEQRALPSLWHERDFCLLVGPQTGCSLEEHCKIKVLLVAGFFCKHQGKRRNTSRTSYKNRLKIGEERGINRGQLELFSRCFCPES
SSRRNSVGTLGLQHLDAVAISPSERLKSRQRRDAKPTASRRCRDFMRRLFYVKTCAETLMGGLVRAVRVELGPVWSGSTRFMGGSGFSRPVRSGSGRFVDSRPIMELYMM