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Spg004741 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004741
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold5:22475828..22482442
RNA-Seq ExpressionSpg004741
SyntenySpg004741
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.7e-3052.73Show/hide
Query:  QPVNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILGPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWLELYIESVTFQTRLCQGC
        QP+ + F + + L     EST F SK+GG LVFS  LSIL PRGNR +L TG+LDKTVEIELPVPDTLPTSAES +S+SSTWLELY ESV  +       
Subjt:  QPVNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILGPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWLELYIESVTFQTRLCQGC

Query:  TMCMLKGFRGFRCVVFRIECFISMISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
                  ++    R+  ++             GS GIVRGDD+CWLHAVF AK AG PGGGV
Subjt:  TMCMLKGFRGFRCVVFRIECFISMISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

KAA0054353.1 uncharacterized protein E6C27_scaffold24G00800 [Cucumis melo var. makuwa]4.8e-4054.5Show/hide
Query:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSIL------------GPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAE
        VNLWF +    +     STGFSSK GG LVFS  LSIL             PRGN  SLQTGELDKT                 VEIELPV DTL TSAE
Subjt:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSIL------------GPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAE

Query:  SFRSSSSTWLELYIESVTFQ------TRLCQGCTMCMLKGFRGFRCVVFRIECFISMISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTT
        S  S+SSTWL+LY ES+  +      + +     +C  +GFRGFRCVVF +E  IS I MFIRF+VSVGSTGIVRG+DV W H VFRAK AGG GGGVT+
Subjt:  SFRSSSSTWLELYIESVTFQ------TRLCQGCTMCMLKGFRGFRCVVFRIECFISMISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTT

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.7e-3247.22Show/hide
Query:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILG--------------------------PRGNRSSLQTGELDKT---------------VEIE
        VNLWF +    +    +STGFSSK GG LVFS  LSIL                           PRGNR SLQT ELDKT               V IE
Subjt:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILG--------------------------PRGNRSSLQTGELDKT---------------VEIE

Query:  LPVPDTLPTSAESFRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS-----MISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAK
        LPVPD LPTSAES  S+SSTWLELY ESV                           +E F S     M  + + F+VSVGSTGIVRGDDVCWLHAVFRAK
Subjt:  LPVPDTLPTSAESFRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS-----MISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAK

Query:  LAGGPGGGVTTSNQSS
          GGPGGGVTT   S+
Subjt:  LAGGPGGGVTTSNQSS

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]1.3e-2949.47Show/hide
Query:  TGFSSKAGGSLVFSVVLSILGP-----------------------RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRSSSS
        TGFSSK GG LVFS  LSIL                         RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAES  S+SS
Subjt:  TGFSSKAGGSLVFSVVLSILGP-----------------------RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRSSSS

Query:  TWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTT
        TWLELY ESV  +                        + C+ +   M  + + FSV VGSTGIVRGDDVCWLHAVFRAK  GGPGGGVTT
Subjt:  TWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTT

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]4.2e-3651.74Show/hide
Query:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSI-----------LGPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESFR
        VNLWF +    +    +STGFSSK GG LV S  LSI           LGPRGNR SLQTGELDKTV                IELPVPDTLPTSAES  
Subjt:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSI-----------LGPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESFR

Query:  SSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS-----MISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTSNQS
        S+SSTWLELY ESV                           +E F S     M  + + F+VSVGSTGIVRGDDVCWLHAVFRAK  GGPGGGVTT   S
Subjt:  SSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS-----MISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTSNQS

Query:  S
        +
Subjt:  S

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein1.3e-3052.73Show/hide
Query:  QPVNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILGPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWLELYIESVTFQTRLCQGC
        QP+ + F + + L     EST F SK+GG LVFS  LSIL PRGNR +L TG+LDKTVEIELPVPDTLPTSAES +S+SSTWLELY ESV  +       
Subjt:  QPVNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILGPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWLELYIESVTFQTRLCQGC

Query:  TMCMLKGFRGFRCVVFRIECFISMISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
                  ++    R+  ++             GS GIVRGDD+CWLHAVF AK AG PGGGV
Subjt:  TMCMLKGFRGFRCVVFRIECFISMISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

A0A5A7UEC1 Uncharacterized protein2.3e-4054.5Show/hide
Query:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSIL------------GPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAE
        VNLWF +    +     STGFSSK GG LVFS  LSIL             PRGN  SLQTGELDKT                 VEIELPV DTL TSAE
Subjt:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSIL------------GPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAE

Query:  SFRSSSSTWLELYIESVTFQ------TRLCQGCTMCMLKGFRGFRCVVFRIECFISMISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTT
        S  S+SSTWL+LY ES+  +      + +     +C  +GFRGFRCVVF +E  IS I MFIRF+VSVGSTGIVRG+DV W H VFRAK AGG GGGVT+
Subjt:  SFRSSSSTWLELYIESVTFQ------TRLCQGCTMCMLKGFRGFRCVVFRIECFISMISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTT

A0A5A7UT17 CCHC-type domain-containing protein8.0e-3347.22Show/hide
Query:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILG--------------------------PRGNRSSLQTGELDKT---------------VEIE
        VNLWF +    +    +STGFSSK GG LVFS  LSIL                           PRGNR SLQT ELDKT               V IE
Subjt:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILG--------------------------PRGNRSSLQTGELDKT---------------VEIE

Query:  LPVPDTLPTSAESFRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS-----MISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAK
        LPVPD LPTSAES  S+SSTWLELY ESV                           +E F S     M  + + F+VSVGSTGIVRGDDVCWLHAVFRAK
Subjt:  LPVPDTLPTSAESFRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS-----MISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAK

Query:  LAGGPGGGVTTSNQSS
          GGPGGGVTT   S+
Subjt:  LAGGPGGGVTTSNQSS

A0A5A7V9N3 Reverse transcriptase6.4e-3049.47Show/hide
Query:  TGFSSKAGGSLVFSVVLSILGP-----------------------RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRSSSS
        TGFSSK GG LVFS  LSIL                         RGNRSSLQ+GELD T                 VEIELPVPDTLPTSAES  S+SS
Subjt:  TGFSSKAGGSLVFSVVLSILGP-----------------------RGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESFRSSSS

Query:  TWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTT
        TWLELY ESV  +                        + C+ +   M  + + FSV VGSTGIVRGDDVCWLHAVFRAK  GGPGGGVTT
Subjt:  TWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS---MISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTT

A0A5D3CJX3 CCHC-type domain-containing protein2.0e-3651.74Show/hide
Query:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSI-----------LGPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESFR
        VNLWF +    +    +STGFSSK GG LV S  LSI           LGPRGNR SLQTGELDKTV                IELPVPDTLPTSAES  
Subjt:  VNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSI-----------LGPRGNRSSLQTGELDKTV---------------EIELPVPDTLPTSAESFR

Query:  SSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS-----MISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTSNQS
        S+SSTWLELY ESV                           +E F S     M  + + F+VSVGSTGIVRGDDVCWLHAVFRAK  GGPGGGVTT   S
Subjt:  SSSSTWLELYIESVTFQTRLCQGCTMCMLKGFRGFRCVVFRIECFIS-----MISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTSNQS

Query:  S
        +
Subjt:  S

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCAAATTTCGCTTAGAAAATTTCCCTTCGCTCCATGTGATGACCAACAGTGAATTTATCTCTCTAGGGTTTCAGTCTTCGTCCGCTTTCAGAGGGGCTTCCGGACC
TTTGGCCCTGGTCGGCCTCGGCATTGGGCCAAGGCCAACCCTTACCCTCGGCCTCTCCCTTGGGCTGAGGCCGAGGGTCGTGGTTTTGGGCCGGAATGAATTCTGGCCCT
TTGTCTTATTTGTAAAACCAGAAATTGGAGATTTGGCTATTGAAAAGGTGACACTGGTTGAAGATGGCTTGGGGATGAATAGTCTTGAAGATGGATGTTTTCCTGACTCT
GAAGTGAAGATGGATGAAAGTCATAGAGACGAGTTAGAGGTAGAGCATATGGTGGAAGGAAATAAGGTGCTTGTTGATGACAACAGTTCCGAGGTCATGGAAGTGGAAGA
TGATGAACAACGTAGTGAAAAGGTTTCTGGTGCAGATCTCTCATGTCTGGATAAAGAGATGACTTGCAGGGCTTATGAACAAAGCAAGAATAGCGAAGATAAAGATATTT
CAATGGAGCACTTTAAGGAGAGAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGAATC
TGTGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGT
TGTTTTGAGCATTCTGGGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCAG
CTGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACCTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTC
CGTGGATTCCGCTGTGTGGTGTTTCGTATAGAATGTTTTATATCAATGATTAGTATGTTTATCAGGTTCAGCGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGA
TGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTCGAATCAGAGCAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGTCAAATTTCGCTTAGAAAATTTCCCTTCGCTCCATGTGATGACCAACAGTGAATTTATCTCTCTAGGGTTTCAGTCTTCGTCCGCTTTCAGAGGGGCTTCCGGACC
TTTGGCCCTGGTCGGCCTCGGCATTGGGCCAAGGCCAACCCTTACCCTCGGCCTCTCCCTTGGGCTGAGGCCGAGGGTCGTGGTTTTGGGCCGGAATGAATTCTGGCCCT
TTGTCTTATTTGTAAAACCAGAAATTGGAGATTTGGCTATTGAAAAGGTGACACTGGTTGAAGATGGCTTGGGGATGAATAGTCTTGAAGATGGATGTTTTCCTGACTCT
GAAGTGAAGATGGATGAAAGTCATAGAGACGAGTTAGAGGTAGAGCATATGGTGGAAGGAAATAAGGTGCTTGTTGATGACAACAGTTCCGAGGTCATGGAAGTGGAAGA
TGATGAACAACGTAGTGAAAAGGTTTCTGGTGCAGATCTCTCATGTCTGGATAAAGAGATGACTTGCAGGGCTTATGAACAAAGCAAGAATAGCGAAGATAAAGATATTT
CAATGGAGCACTTTAAGGAGAGAGTGAAGGAGGAGGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGAATC
TGTGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGT
TGTTTTGAGCATTCTGGGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCAG
CTGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCGTTACCTTCCAAACCAGGTTATGTCAGGGCTGCACCATGTGTATGTTGAAAGGTTTC
CGTGGATTCCGCTGTGTGGTGTTTCGTATAGAATGTTTTATATCAATGATTAGTATGTTTATCAGGTTCAGCGTTTCAGTAGGGTCAACAGGGATCGTTAGAGGTGACGA
TGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACTTCGAATCAGAGCAGTTAG
Protein sequenceShow/hide protein sequence
MVKFRLENFPSLHVMTNSEFISLGFQSSSAFRGASGPLALVGLGIGPRPTLTLGLSLGLRPRVVVLGRNEFWPFVLFVKPEIGDLAIEKVTLVEDGLGMNSLEDGCFPDS
EVKMDESHRDELEVEHMVEGNKVLVDDNSSEVMEVEDDEQRSEKVSGADLSCLDKEMTCRAYEQSKNSEDKDISMEHFKERVKEEEEEEFRGLRLKKIGKSSCKASHCRI
CVQPVNLWFFIRFELHRRNQESTGFSSKAGGSLVFSVVLSILGPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESFRSSSSTWLELYIESVTFQTRLCQGCTMCMLKGF
RGFRCVVFRIECFISMISMFIRFSVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTTSNQSS