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Spg004747 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004747
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold5:20653871..20659970
RNA-Seq ExpressionSpg004747
SyntenySpg004747
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-2445.83Show/hide
Query:  QSTGFSSKPGGSLVFSGALSILG-----------------------CT------------------------SRIRSSIWPRGNRSSLQTGELDKTPEAI
        +STGFSSKPGG LVFS ALSIL                        C+                        S + +   PRGNR SLQT E+DKT    
Subjt:  QSTGFSSKPGGSLVFSGALSILG-----------------------CT------------------------SRIRSSIWPRGNRSSLQTGELDKTPEAI

Query:  WYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWVCPT----QRRSVMLVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHI
                 PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAE+SR++SSTW+ELY ESVH+
Subjt:  WYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWVCPT----QRRSVMLVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHI

KAA0065516.1 uncharacterized protein E6C27_scaffold638G00090 [Cucumis melo var. makuwa]1.3e-3160.26Show/hide
Query:  STGFSSKPGGSLVFSGALSILGC--TSRIRSSIWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAG------------RAPLHRR
        ST FSSKPG  LVFS ALSIL    +++    +WPRGNRSSLQTGELDKT              L TLSVLRDNDAVVSAG            RAPLHRR
Subjt:  STGFSSKPGGSLVFSGALSILGC--TSRIRSSIWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAG------------RAPLHRR

Query:  TSKRWLYWVCPTQRRSVML----------VEIELPVPDTLPTSAENSRTSS
        TSKRWLYW CPT RRSVML          VEIEL VPDTLPTSAE+S ++S
Subjt:  TSKRWLYWVCPTQRRSVML----------VEIELPVPDTLPTSAENSRTSS

TYJ98800.1 uncharacterized protein E5676_scaffold1625G00140 [Cucumis melo var. makuwa]1.3e-3160.26Show/hide
Query:  STGFSSKPGGSLVFSGALSILGC--TSRIRSSIWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAG------------RAPLHRR
        ST FSSKPG  LVFS ALSIL    +++    +WPRGNRSSLQTGELDKT              L TLSVLRDNDAVVSAG            RAPLHRR
Subjt:  STGFSSKPGGSLVFSGALSILGC--TSRIRSSIWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAG------------RAPLHRR

Query:  TSKRWLYWVCPTQRRSVML----------VEIELPVPDTLPTSAENSRTSS
        TSKRWLYW CPT RRSVML          VEIEL VPDTLPTSAE+S ++S
Subjt:  TSKRWLYWVCPTQRRSVML----------VEIELPVPDTLPTSAENSRTSS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]1.6e-2445.83Show/hide
Query:  QSTGFSSKPGGSLVFSGALSILG-----------------------CT------------------------SRIRSSIWPRGNRSSLQTGELDKTPEAI
        +STGFSSKPGG LVFS ALSIL                        C+                        S + +   PRGNR SLQT E+DKT    
Subjt:  QSTGFSSKPGGSLVFSGALSILG-----------------------CT------------------------SRIRSSIWPRGNRSSLQTGELDKTPEAI

Query:  WYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWVCPT----QRRSVMLVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHI
                 PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAE+SR++SSTW+ELY ESVH+
Subjt:  WYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWVCPT----QRRSVMLVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHI

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]8.8e-2845Show/hide
Query:  SEHFKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNFNGCLNGKQSTGFSSKPGGSLVFSGALSILGCTSRIRSSIW-------------PRGNRS
        SEHF+ERVK EEEEEFRG  +++  KSSCKA+H RIW            STGFSSKP G LVFS ALSIL      +   W             PRGNRS
Subjt:  SEHFKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNFNGCLNGKQSTGFSSKPGGSLVFSGALSILGCTSRIRSSIW-------------PRGNRS

Query:  SLQTGELDKTPEAIWYRVH------------TGYIPLLTLSVLRDNDAVVSAGRAPLHRRT----SKRWLYWVCPTQRRSVML------VEIELPVPDTL
        SLQTG+LDK   +I Y                   PL TLSVLRDNDAVVS G+    +         ++  +        +L      +EIEL VPDTL
Subjt:  SLQTGELDKTPEAIWYRVH------------TGYIPLLTLSVLRDNDAVVSAGRAPLHRRT----SKRWLYWVCPTQRRSVML------VEIELPVPDTL

Query:  PTSAENSRTSSSTWVELYIE
        PTSAE+S ++SSTW+E   E
Subjt:  PTSAENSRTSSSTWVELYIE

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase7.5e-2545.83Show/hide
Query:  QSTGFSSKPGGSLVFSGALSILG-----------------------CT------------------------SRIRSSIWPRGNRSSLQTGELDKTPEAI
        +STGFSSKPGG LVFS ALSIL                        C+                        S + +   PRGNR SLQT E+DKT    
Subjt:  QSTGFSSKPGGSLVFSGALSILG-----------------------CT------------------------SRIRSSIWPRGNRSSLQTGELDKTPEAI

Query:  WYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWVCPT----QRRSVMLVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHI
                 PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAE+SR++SSTW+ELY ESVH+
Subjt:  WYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWVCPT----QRRSVMLVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHI

A0A5A7VGQ5 Uncharacterized protein6.4e-3260.26Show/hide
Query:  STGFSSKPGGSLVFSGALSILGC--TSRIRSSIWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAG------------RAPLHRR
        ST FSSKPG  LVFS ALSIL    +++    +WPRGNRSSLQTGELDKT              L TLSVLRDNDAVVSAG            RAPLHRR
Subjt:  STGFSSKPGGSLVFSGALSILGC--TSRIRSSIWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAG------------RAPLHRR

Query:  TSKRWLYWVCPTQRRSVML----------VEIELPVPDTLPTSAENSRTSS
        TSKRWLYW CPT RRSVML          VEIEL VPDTLPTSAE+S ++S
Subjt:  TSKRWLYWVCPTQRRSVML----------VEIELPVPDTLPTSAENSRTSS

A0A5D3BG85 Uncharacterized protein6.4e-3260.26Show/hide
Query:  STGFSSKPGGSLVFSGALSILGC--TSRIRSSIWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAG------------RAPLHRR
        ST FSSKPG  LVFS ALSIL    +++    +WPRGNRSSLQTGELDKT              L TLSVLRDNDAVVSAG            RAPLHRR
Subjt:  STGFSSKPGGSLVFSGALSILGC--TSRIRSSIWPRGNRSSLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAG------------RAPLHRR

Query:  TSKRWLYWVCPTQRRSVML----------VEIELPVPDTLPTSAENSRTSS
        TSKRWLYW CPT RRSVML          VEIEL VPDTLPTSAE+S ++S
Subjt:  TSKRWLYWVCPTQRRSVML----------VEIELPVPDTLPTSAENSRTSS

A0A5D3BTP3 Reverse transcriptase7.5e-2545.83Show/hide
Query:  QSTGFSSKPGGSLVFSGALSILG-----------------------CT------------------------SRIRSSIWPRGNRSSLQTGELDKTPEAI
        +STGFSSKPGG LVFS ALSIL                        C+                        S + +   PRGNR SLQT E+DKT    
Subjt:  QSTGFSSKPGGSLVFSGALSILG-----------------------CT------------------------SRIRSSIWPRGNRSSLQTGELDKTPEAI

Query:  WYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWVCPT----QRRSVMLVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHI
                 PL TLSVL DNDAVVSAG+APL +R   RW     PT    +  S  LVEIELPVPD LPTSAE+SR++SSTW+ELY ESVH+
Subjt:  WYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWVCPT----QRRSVMLVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHI

A0A5D3CAC6 Uncharacterized protein4.3e-2845Show/hide
Query:  SEHFKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNFNGCLNGKQSTGFSSKPGGSLVFSGALSILGCTSRIRSSIW-------------PRGNRS
        SEHF+ERVK EEEEEFRG  +++  KSSCKA+H RIW            STGFSSKP G LVFS ALSIL      +   W             PRGNRS
Subjt:  SEHFKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNFNGCLNGKQSTGFSSKPGGSLVFSGALSILGCTSRIRSSIW-------------PRGNRS

Query:  SLQTGELDKTPEAIWYRVH------------TGYIPLLTLSVLRDNDAVVSAGRAPLHRRT----SKRWLYWVCPTQRRSVML------VEIELPVPDTL
        SLQTG+LDK   +I Y                   PL TLSVLRDNDAVVS G+    +         ++  +        +L      +EIEL VPDTL
Subjt:  SLQTGELDKTPEAIWYRVH------------TGYIPLLTLSVLRDNDAVVSAGRAPLHRRT----SKRWLYWVCPTQRRSVML------VEIELPVPDTL

Query:  PTSAENSRTSSSTWVELYIE
        PTSAE+S ++SSTW+E   E
Subjt:  PTSAENSRTSSSTWVELYIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGAAAATCGACAGCGTCTCGACGCCGTGTCGTGTTTTTAGCAATGGCGGCCATGGTTTCCACAACTCCGAGCACTTTAAGGAGAGAGTGAAGGAGGAAGAAGAAGA
AGAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTTTAATGGATGTTTGAATGGAAAACAGAGCA
CAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGCTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGCCAAGAGGAAATAGGTCG
AGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGT
CGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGTGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGG
TGCCTGATACACTGCCAACGTCTGCTGAAAATTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCGGAAAATCGACAGCGTCTCGACGCCGTGTCGTGTTTTTAGCAATGGCGGCCATGGTTTCCACAACTCCGAGCACTTTAAGGAGAGAGTGAAGGAGGAAGAAGAAGA
AGAATTTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTTTAATGGATGTTTGAATGGAAAACAGAGCA
CAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGCTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGCCAAGAGGAAATAGGTCG
AGTCTACAAACCGGGGAACTAGATAAGACACCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGT
CGTGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGTGTGCCCTACACAACGTAGATCGGTCATGTTAGTAGAGATCGAGCTCCCGG
TGCCTGATACACTGCCAACGTCTGCTGAAAATTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MRKIDSVSTPCRVFSNGGHGFHNSEHFKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNFNGCLNGKQSTGFSSKPGGSLVFSGALSILGCTSRIRSSIWPRGNRS
SLQTGELDKTPEAIWYRVHTGYIPLLTLSVLRDNDAVVSAGRAPLHRRTSKRWLYWVCPTQRRSVMLVEIELPVPDTLPTSAENSRTSSSTWVELYIESVHIVNVL