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Spg004748 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004748
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold5:20515473..20518146
RNA-Seq ExpressionSpg004748
SyntenySpg004748
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]9.6e-2052.52Show/hide
Query:  ESEGRRRRRISWFEVEEDREKLMQSQPLQNLGAKL------STSGF--------LF--GLSYTEGTKRLNQKLYLVSCRVFENEEFDVPRGSRSSLQTRE
        ESEGRR RRISWFEVEEDR+K MQSQPLQNLGA +      S++GF        +F   LS  E   + NQKLYL                         
Subjt:  ESEGRRRRRISWFEVEEDREKLMQSQPLQNLGAKL------STSGF--------LF--GLSYTEGTKRLNQKLYLVSCRVFENEEFDVPRGSRSSLQTRE

Query:  LDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESIHI
            VEIELPVPDTL TSAESSRS+SSTWLELY ES+H+
Subjt:  LDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESIHI

KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]1.2e-1959.41Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRLNQKLYLVSCRVFENEEFDVPRGSRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESIH
        MQSQPLQNLGA ++    LF LSY EGTKR                    PRG+R SLQT +LDKTVEIELP+PDTLPT AES  S+SSTWLELY ES+H
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRLNQKLYLVSCRVFENEEFDVPRGSRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESIH

Query:  I
        +
Subjt:  I

KAA0053207.1 hypothetical protein E6C27_scaffold1192G00340 [Cucumis melo var. makuwa]8.1e-1947.2Show/hide
Query:  MQSQPLQNLGA-----------KLST--SGFLF---GLSYTEGTKRLNQKLYLVSCRVFENEEF---------------------------DVPRGSRSS
        MQSQPLQNLGA           K S+   GFL     LS  E   +LNQKLYLVSC VFENEEF                           ++PRG+R S
Subjt:  MQSQPLQNLGA-----------KLST--SGFLF---GLSYTEGTKRLNQKLYLVSCRVFENEEF---------------------------DVPRGSRSS

Query:  LQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESIHI
        LQT ELDKT                 VEIELP P+ LPTSAESSRS+SSTWLELY E +H+
Subjt:  LQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESIHI

KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]5.6e-2050.35Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTK------------------------RLNQKLYLV-SCRV--FENEEFDVPRGSRSSLQTRELDKT-------
        MQSQPLQNLGA ++    LF LSY EGTK                        + NQKLYLV   R+   EN +  +PRG+R SLQTRELDKT       
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTK------------------------RLNQKLYLV-SCRV--FENEEFDVPRGSRSSLQTRELDKT-------

Query:  --------VEIELPVPDTLPTSAESSRSSSSTWLELYIESIHI
                V IELPVPD LPTSAESS S+SSTWLELY ES+H+
Subjt:  --------VEIELPVPDTLPTSAESSRSSSSTWLELYIESIHI

KAA0066795.1 uncharacterized protein E6C27_scaffold271G001440 [Cucumis melo var. makuwa]1.2e-1954.4Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTK------------------------RLNQKLYLVSCRVFENEEFDVPRGSRSSLQTRELDKTVEIELPVPDT
        MQSQPLQNLGA ++    LFGLSY E TK                        + +QKLYLV            PRG+R SLQTRELDKT  IELPVPDT
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTK------------------------RLNQKLYLVSCRVFENEEFDVPRGSRSSLQTRELDKTVEIELPVPDT

Query:  LPTSAESSRSSSSTWLELYIESIHI
        LPTSAESS S+SSTWLELY ES+H+
Subjt:  LPTSAESSRSSSSTWLELYIESIHI

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase4.6e-2052.52Show/hide
Query:  ESEGRRRRRISWFEVEEDREKLMQSQPLQNLGAKL------STSGF--------LF--GLSYTEGTKRLNQKLYLVSCRVFENEEFDVPRGSRSSLQTRE
        ESEGRR RRISWFEVEEDR+K MQSQPLQNLGA +      S++GF        +F   LS  E   + NQKLYL                         
Subjt:  ESEGRRRRRISWFEVEEDREKLMQSQPLQNLGAKL------STSGF--------LF--GLSYTEGTKRLNQKLYLVSCRVFENEEFDVPRGSRSSLQTRE

Query:  LDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESIHI
            VEIELPVPDTL TSAESSRS+SSTWLELY ES+H+
Subjt:  LDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESIHI

A0A5A7TAS6 NBS-LRR type resistance protein6.1e-2059.41Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRLNQKLYLVSCRVFENEEFDVPRGSRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESIH
        MQSQPLQNLGA ++    LF LSY EGTKR                    PRG+R SLQT +LDKTVEIELP+PDTLPT AES  S+SSTWLELY ES+H
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTKRLNQKLYLVSCRVFENEEFDVPRGSRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESIH

Query:  I
        +
Subjt:  I

A0A5A7UFD2 Uncharacterized protein3.9e-1947.2Show/hide
Query:  MQSQPLQNLGA-----------KLST--SGFLF---GLSYTEGTKRLNQKLYLVSCRVFENEEF---------------------------DVPRGSRSS
        MQSQPLQNLGA           K S+   GFL     LS  E   +LNQKLYLVSC VFENEEF                           ++PRG+R S
Subjt:  MQSQPLQNLGA-----------KLST--SGFLF---GLSYTEGTKRLNQKLYLVSCRVFENEEF---------------------------DVPRGSRSS

Query:  LQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESIHI
        LQT ELDKT                 VEIELP P+ LPTSAESSRS+SSTWLELY E +H+
Subjt:  LQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSSTWLELYIESIHI

A0A5A7UT17 CCHC-type domain-containing protein2.7e-2050.35Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTK------------------------RLNQKLYLV-SCRV--FENEEFDVPRGSRSSLQTRELDKT-------
        MQSQPLQNLGA ++    LF LSY EGTK                        + NQKLYLV   R+   EN +  +PRG+R SLQTRELDKT       
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTK------------------------RLNQKLYLV-SCRV--FENEEFDVPRGSRSSLQTRELDKT-------

Query:  --------VEIELPVPDTLPTSAESSRSSSSTWLELYIESIHI
                V IELPVPD LPTSAESS S+SSTWLELY ES+H+
Subjt:  --------VEIELPVPDTLPTSAESSRSSSSTWLELYIESIHI

A0A5D3DWP3 Uncharacterized protein6.1e-2054.4Show/hide
Query:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTK------------------------RLNQKLYLVSCRVFENEEFDVPRGSRSSLQTRELDKTVEIELPVPDT
        MQSQPLQNLGA ++    LFGLSY E TK                        + +QKLYLV            PRG+R SLQTRELDKT  IELPVPDT
Subjt:  MQSQPLQNLGAKLSTSGFLFGLSYTEGTK------------------------RLNQKLYLVSCRVFENEEFDVPRGSRSSLQTRELDKTVEIELPVPDT

Query:  LPTSAESSRSSSSTWLELYIESIHI
        LPTSAESS S+SSTWLELY ES+H+
Subjt:  LPTSAESSRSSSSTWLELYIESIHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTAATACCGGAAGGGAATCACATGTTTATTTCTCGCTTAGGCATCAATATTCTGTCGATTCATTGTTATGCGCTACATTAATATCTTATCTGTCGCATGTGGTTGC
TGCGGCGAAAGTCTTGATAGCTCATCATCCACCAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGC
TCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTGTTCGGTTTGAGCTACACAGAAGGAACTAAGAGGTTGAATCAGAAGCTCTAT
TTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGCCAAGAGGAAGTAGGTCGAGTCTACAAACCAGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGT
GCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCATTCATATAGTAAATGTTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTGTAATACCGGAAGGGAATCACATGTTTATTTCTCGCTTAGGCATCAATATTCTGTCGATTCATTGTTATGCGCTACATTAATATCTTATCTGTCGCATGTGGTTGC
TGCGGCGAAAGTCTTGATAGCTCATCATCCACCAGCACTTGAGGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGC
TCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAAACTGTCAACCTCTGGTTTTTTGTTCGGTTTGAGCTACACAGAAGGAACTAAGAGGTTGAATCAGAAGCTCTAT
TTGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGCCAAGAGGAAGTAGGTCGAGTCTACAAACCAGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGT
GCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACGTGGTTGGAGTTGTATATTGAGTCCATTCATATAGTAAATGTTTTGTAA
Protein sequenceShow/hide protein sequence
MCNTGRESHVYFSLRHQYSVDSLLCATLISYLSHVVAAAKVLIAHHPPALEGESEGRRRRRISWFEVEEDREKLMQSQPLQNLGAKLSTSGFLFGLSYTEGTKRLNQKLY
LVSCRVFENEEFDVPRGSRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSSTWLELYIESIHIVNVL