CuGenDBv2

Gene ID	Spg004752
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RING-type E3 ubiquitin transferase
Genome location	scaffold5:19269212..19269866
RNA-Seq Expression	Spg004752
Synteny	Spg004752
Gene Ontology terms	GO:0016567 - protein ubiquitination (biological process) GO:0004842 - ubiquitin-protein transferase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008444531.1 PREDICTED: U-box domain-containing protein 30-like [Cucumis melo]

1.9e-20

91.94

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Query:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK
        VVDNGGV LISSLLGSFTSHA GSEAVGILVNLDL+SELKKNLIQPTR+SLIADILNEGSI+
Subjt:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK

XP_011649559.1 U-box domain-containing protein 30 isoform X1 [Cucumis sativus]

1.9e-20

91.94

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Query:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK
        VVDNGGV LISSLLGSFTSHA GSEAVGILVNLDL+SELKKNLIQPTR+SLIADILNEGSI+
Subjt:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK

XP_022131435.1 U-box domain-containing protein 31-like [Momordica charantia]

8.6e-21

93.55

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Query:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK
        VVDNGGV LISSLLGSFTSHA GSEAVGILVNLDLDSELKKNLIQPTR+SLIADILNEGSI+
Subjt:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK

XP_031736908.1 U-box domain-containing protein 30 isoform X2 [Cucumis sativus]

1.9e-20

91.94

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Query:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK
        VVDNGGV LISSLLGSFTSHA GSEAVGILVNLDL+SELKKNLIQPTR+SLIADILNEGSI+
Subjt:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK

XP_038884660.1 U-box domain-containing protein 31-like [Benincasa hispida]

5.0e-21

93.55

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Query:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK
        VVDNGGV LISSLLGSFTSHA GSEAVGILVNLDLDSELKKNLIQPTR+SLIADILNEGSI+
Subjt:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LKY4 RING-type E3 ubiquitin transferase

9.3e-21

91.94

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Query:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK
        VVDNGGV LISSLLGSFTSHA GSEAVGILVNLDL+SELKKNLIQPTR+SLIADILNEGSI+
Subjt:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK

A0A1S3BA20 RING-type E3 ubiquitin transferase

9.3e-21

91.94

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Query:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK
        VVDNGGV LISSLLGSFTSHA GSEAVGILVNLDL+SELKKNLIQPTR+SLIADILNEGSI+
Subjt:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK

A0A5A7UYA8 RING-type E3 ubiquitin transferase

9.3e-21

91.94

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Query:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK
        VVDNGGV LISSLLGSFTSHA GSEAVGILVNLDL+SELKKNLIQPTR+SLIADILNEGSI+
Subjt:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK

A0A6J1BPQ0 RING-type E3 ubiquitin transferase

4.2e-21

93.55

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Query:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK
        VVDNGGV LISSLLGSFTSHA GSEAVGILVNLDLDSELKKNLIQPTR+SLIADILNEGSI+
Subjt:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK

A0A6J1K5I0 RING-type E3 ubiquitin transferase

2.7e-20

90.32

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Query:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK
        VVDNGGV LISSLLGSFTSHA GSE VGILVNLDL+SELKKNLIQPTR+SLIADILNEGSI+
Subjt:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK

SwissProt top hits

e value

%identity

Alignment

Q058P4 U-box domain-containing protein 30

5.6e-15

66.67

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Query:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGS
        VV+ GGV++ISSLLG FTSHA GSE V ILV+LDLDS+ K  L+QP ++SLI D+LN+GS
Subjt:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGS

Q10PI9 U-box domain-containing protein 75

1.4e-10

45.12

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Query:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVN-LDLDSELKKNLIQPTRMSLIADILNEGSIKMGRRNSSSLPIFLKKNGER
        + + GGV L++SLLG FTSHA GSEAV ILV+ + LD++ K  L+QP ++SL+ D+LNEG++         + I +++ G R
Subjt:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVN-LDLDSELKKNLIQPTRMSLIADILNEGSIKMGRRNSSSLPIFLKKNGER

Q9FHN9 U-box domain-containing protein 31

3.3e-15

66.13

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Query:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK
        VVD GGV +ISSLL  FTSHA GSEA+ ILVNL+LDS+ K  L+QP R+SL+ D+LN+GSI+
Subjt:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK

Arabidopsis top hits

e value

%identity

Alignment

AT3G49810.1 ARM repeat superfamily protein

4.0e-16

66.67

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Query:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGS
        VV+ GGV++ISSLLG FTSHA GSE V ILV+LDLDS+ K  L+QP ++SLI D+LN+GS
Subjt:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGS

AT5G65920.1 ARM repeat superfamily protein

2.3e-16

66.13

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Query:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK
        VVD GGV +ISSLL  FTSHA GSEA+ ILVNL+LDS+ K  L+QP R+SL+ D+LN+GSI+
Subjt:  VVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIK

Sequences

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CDS sequence

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ATGATCGAGAAGTTCCTTCCCCATTTTCCTTTCCAAGAGCAGGGAAATTTCTTTTGGCAGGCTAAGATTTGTGCTATTGTTTGGGGGTTATGGGATTGGAGGACGTTCAA
GGCAGAGTTTGGGTTCTTTCACTTTTGGGTTGTCGACAACGGTGGCGTCACGCTAATCTCCTCTCTTTTGGGTTCTTTTACTTCTCACGCAGCTGGGTCCGAAGCCGTGG
GGATCCTCGTCAATTTGGATCTCGATTCGGAGTTGAAGAAGAATCTGATTCAACCCACGAGAATGTCCCTAATTGCAGATATTTTAAACGAAGGGTCCATTAAAATGGGG
AGGAGGAACTCCTCCTCCCTCCCTATTTTCTTAAAAAAAAATGGAGAGAGAAGAAATGAAGAAGAAGAAAGAGGAAGGAGGAGAGAAAAAAAAAAAAAAAGTCACAGGCC
GCCGACCGGCAGTGGCAACAATGGAAGTGAGATGGTGCTTGGAGAAGAAGGGGAAGGTGAAGAAGGAGAAAGAGAGATGGAGAAAGAAATAAAATAA

mRNA sequence

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Protein sequence

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MIEKFLPHFPFQEQGNFFWQAKICAIVWGLWDWRTFKAEFGFFHFWVVDNGGVTLISSLLGSFTSHAAGSEAVGILVNLDLDSELKKNLIQPTRMSLIADILNEGSIKMG
RRNSSSLPIFLKKNGERRNEEEERGRRREKKKKSHRPPTGSGNNGSEMVLGEEGEGEEGEREMEKEIK

Spg004752 (gene) of Sponge gourd (cylindrica) v1 genome