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Spg004774 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004774
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
Description40S ribosomal protein S13
Genome locationscaffold5:21591662..21595769
RNA-Seq ExpressionSpg004774
SyntenySpg004774
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005730 - nucleolus (cellular component)
GO:0022627 - cytosolic small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domainsIPR000589 - Ribosomal protein S15
IPR009068 - S15/NS1, RNA-binding
IPR023029 - Ribosomal protein S15P


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BBH02569.1 ribosomal protein S13A [Prunus dulcis]3.3e-2059Show/hide
Query:  CLANKSLVQLALSCTDDHKFDVLFHLDSS-------SQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK
        C    + +Q+ +   D H    +  +  S       +  LAP+I EDLYHLIKK VSIRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VWK
Subjt:  CLANKSLVQLALSCTDDHKFDVLFHLDSS-------SQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK

EXC17873.1 40S ribosomal protein S13 [Morus notabilis]3.3e-2085.94Show/hide
Query:  SQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK
        S  LAP+I EDLYHLIKK VSIRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VWK
Subjt:  SQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK

KAG6390141.1 hypothetical protein SASPL_151623 [Salvia splendens]3.8e-2180.88Show/hide
Query:  LDSSSQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK
        +D    WLAP+I EDLYHLIKK V+IRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VWK
Subjt:  LDSSSQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK

RYR57364.1 hypothetical protein Ahy_A05g023101 isoform C [Arachis hypogaea]5.9e-2264.21Show/hide
Query:  FDCLANKSLVQLALSCTDDHKFDVLFHLDSSSQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK
        F  ++N  + ++ L  T    ++ L H    +  LAP+I EDLYHLIKKVVSIRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VWK
Subjt:  FDCLANKSLVQLALSCTDDHKFDVLFHLDSSSQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK

XP_004147941.1 40S ribosomal protein S13 [Cucumis sativus]1.9e-2085.94Show/hide
Query:  SQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK
        +Q LAP+I EDLYHLIKK VSIRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VWK
Subjt:  SQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK

TrEMBL top hitse value%identityAlignment
A0A0A0L5N6 Ribosomal_S13_N domain-containing protein9.2e-2185.94Show/hide
Query:  SQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK
        +Q LAP+I EDLYHLIKK VSIRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VWK
Subjt:  SQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK

A0A2N9FTI0 Uncharacterized protein1.9e-2157.66Show/hide
Query:  EIKKQY-VVFDAKCFDCLANKSLVQLALSCTDDH--KFDVLFHLDSSSQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYY
        E++KQ+     AK    L+ +S+V+L     + H   FD+L  +  +   LAP+I EDLYHLIKK VSIRKHLERNR DKDSKF+L+LVESRI RL  YY
Subjt:  EIKKQY-VVFDAKCFDCLANKSLVQLALSCTDDH--KFDVLFHLDSSSQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYY

Query:  KKTKKLPLVWK
        KKTKKLP VWK
Subjt:  KKTKKLPLVWK

A0A445D2V6 Uncharacterized protein2.9e-2264.21Show/hide
Query:  FDCLANKSLVQLALSCTDDHKFDVLFHLDSSSQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK
        F  ++N  + ++ L  T    ++ L H    +  LAP+I EDLYHLIKKVVSIRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VWK
Subjt:  FDCLANKSLVQLALSCTDDHKFDVLFHLDSSSQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK

A0A4D9B4Z4 Small subunit ribosomal protein S13e1.9e-2180.88Show/hide
Query:  LDSSSQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK
        +D    WLAP+I EDLYHLIKK V+IRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VWK
Subjt:  LDSSSQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK

A0A4Y1RE89 Ribosomal protein S13A1.6e-2059Show/hide
Query:  CLANKSLVQLALSCTDDHKFDVLFHLDSS-------SQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK
        C    + +Q+ +   D H    +  +  S       +  LAP+I EDLYHLIKK VSIRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VWK
Subjt:  CLANKSLVQLALSCTDDHKFDVLFHLDSS-------SQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK

SwissProt top hitse value%identityAlignment
P46298 40S ribosomal protein S138.0e-2286.89Show/hide
Query:  LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK
        LAP+I EDLYHLIKK VSIRKHLER RKDKDSKF+L+LVESRIHRL RYYKKTKKLP VWK
Subjt:  LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK

P59223 40S ribosomal protein S13-11.6e-2286.89Show/hide
Query:  LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK
        LAP+I EDLYHLIKK V+IRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VWK
Subjt:  LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK

P59224 40S ribosomal protein S13-21.6e-2286.89Show/hide
Query:  LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK
        LAP+I EDLYHLIKK V+IRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VWK
Subjt:  LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK

P62302 40S ribosomal protein S137.3e-2388.52Show/hide
Query:  LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK
        LAP+I EDLYHLIKK VSIRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VWK
Subjt:  LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK

Q69UI2 40S ribosomal protein S13-11.2e-2081.97Show/hide
Query:  LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK
        LAP+I EDLY LIKK V+IRKHLERNRKDKDSKF+L+LVESRIHRL RYYK+TKKLP  WK
Subjt:  LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK

Arabidopsis top hitse value%identityAlignment
AT3G60770.1 Ribosomal protein S13/S151.2e-2386.89Show/hide
Query:  LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK
        LAP+I EDLYHLIKK V+IRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VWK
Subjt:  LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK

AT4G00100.1 ribosomal protein S13A1.2e-2386.89Show/hide
Query:  LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK
        LAP+I EDLYHLIKK V+IRKHLERNRKDKDSKF+L+LVESRIHRL RYYKKTKKLP VWK
Subjt:  LAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCGTCGAAGACCCCGTCGCTAGCGCTTGGAGTCCCTCCGAGCACGCCTTGAGCCTCCTAGAGTGTATGAACCTCGTGCTTAAAAATAAACTTACTATGTGGAATGG
TGACTACGTTGGAGTTGATGAGCTCATTGCTTATATAAAGACAGACAAGGAGTTATTTTGCTCTTCATTGTGCCTGTGTGTAGTGAAAGCAATAGTAGAGATCAAGAAGC
AGTATGTAGTATTTGATGCAAAGTGTTTCGACTGTCTTGCCAACAAGAGCTTAGTTCAACTGGCATTAAGCTGTACTGATGACCACAAGTTTGATGTTCTTTTTCATTTA
GACTCTTCCAGTCAATGGCTAGCTCCTAAAATCTTGGAAGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATTAGAAAGCATTTGGAGAGAAACAGGAAAGACAAGGA
TTCCAAGTTCAAGTTGCTTTTGGTGGAGAGCAGGATCCATCGCCTGACCCGGTATTACAAGAAGACAAAGAAGCTTCCCCTTGTTTGGAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACCGTCGAAGACCCCGTCGCTAGCGCTTGGAGTCCCTCCGAGCACGCCTTGAGCCTCCTAGAGTGTATGAACCTCGTGCTTAAAAATAAACTTACTATGTGGAATGG
TGACTACGTTGGAGTTGATGAGCTCATTGCTTATATAAAGACAGACAAGGAGTTATTTTGCTCTTCATTGTGCCTGTGTGTAGTGAAAGCAATAGTAGAGATCAAGAAGC
AGTATGTAGTATTTGATGCAAAGTGTTTCGACTGTCTTGCCAACAAGAGCTTAGTTCAACTGGCATTAAGCTGTACTGATGACCACAAGTTTGATGTTCTTTTTCATTTA
GACTCTTCCAGTCAATGGCTAGCTCCTAAAATCTTGGAAGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATTAGAAAGCATTTGGAGAGAAACAGGAAAGACAAGGA
TTCCAAGTTCAAGTTGCTTTTGGTGGAGAGCAGGATCCATCGCCTGACCCGGTATTACAAGAAGACAAAGAAGCTTCCCCTTGTTTGGAAGTAG
Protein sequenceShow/hide protein sequence
MTVEDPVASAWSPSEHALSLLECMNLVLKNKLTMWNGDYVGVDELIAYIKTDKELFCSSLCLCVVKAIVEIKKQYVVFDAKCFDCLANKSLVQLALSCTDDHKFDVLFHL
DSSSQWLAPKILEDLYHLIKKVVSIRKHLERNRKDKDSKFKLLLVESRIHRLTRYYKKTKKLPLVWK