; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg004824 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004824
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold9:22750767..22754956
RNA-Seq ExpressionSpg004824
SyntenySpg004824
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033241.1 hypothetical protein E6C27_scaffold845G00350 [Cucumis melo var. makuwa]1.2e-0875Show/hide
Query:  SGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTT
        +GY+ L TL+VLRDNDA+VSAGR PLRQR+WECWA PTT+
Subjt:  SGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTT

KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]5.2e-2055.65Show/hide
Query:  GNRIFIPSGYI------PLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTTKTMGVLGGPHYIVGLVNVGCTGRALHNVEIELPVPDTLPTSAESSRT
        GNR+ + +  I      PLSTLSVL DNDAVVSAG+APLRQRRWEC  GPTT+                       +   VEIELPVPD LPTSAESSR+
Subjt:  GNRIFIPSGYI------PLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTTKTMGVLGGPHYIVGLVNVGCTGRALHNVEIELPVPDTLPTSAESSRT

Query:  SSSTWVELYIESVHI
        +SSTW+ELY ESVH+
Subjt:  SSSTWVELYIESVHI

KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]4.9e-1036.81Show/hide
Query:  AEHFKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNSENLESVLSVFGAILGKSV--------GNRIFIPSGYI------PLSTLSVLRDNDAVVS
        +E+FKERVK EEEEEFRG  +++ KK         +  Q  +NL + ++++  ++G S         GNR  + +G +       LSTLSVLRDNDAV+ 
Subjt:  AEHFKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNSENLESVLSVFGAILGKSV--------GNRIFIPSGYI------PLSTLSVLRDNDAVVS

Query:  AGRAPLRQRRWECWAGPTTTKTMGVLGGPHYIVGLVNVGCTGRALHNVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
          +             PT                             VEIELP+PDTLPT AES  ++SSTW+ELY ESVH+
Subjt:  AGRAPLRQRRWECWAGPTTTKTMGVLGGPHYIVGLVNVGCTGRALHNVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]5.2e-2055.65Show/hide
Query:  GNRIFIPSGYI------PLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTTKTMGVLGGPHYIVGLVNVGCTGRALHNVEIELPVPDTLPTSAESSRT
        GNR+ + +  I      PLSTLSVL DNDAVVSAG+APLRQRRWEC  GPTT+                       +   VEIELPVPD LPTSAESSR+
Subjt:  GNRIFIPSGYI------PLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTTKTMGVLGGPHYIVGLVNVGCTGRALHNVEIELPVPDTLPTSAESSRT

Query:  SSSTWVELYIESVHI
        +SSTW+ELY ESVH+
Subjt:  SSSTWVELYIESVHI

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.8e-2543.44Show/hide
Query:  AEHFKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNSENLESVLSVFGAIL------------------GKS-------VGNRIFIPSGYI-----
        +EHF+ERVK EEEEEFRG  +++  KSSCKA+H RIW     +      VF   L                  GKS        GNR  + +G +     
Subjt:  AEHFKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNSENLESVLSVFGAIL------------------GKS-------VGNRIFIPSGYI-----

Query:  -----------------------PLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTTKTMGVLGGPHYIVGLVNVGCTGRALHNV----EIELPVPDT
                               PLSTLSVLRDNDAVVS G+                 K  GV GGPHYIVGLVNVGCTGR LH++    EIEL VPDT
Subjt:  -----------------------PLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTTKTMGVLGGPHYIVGLVNVGCTGRALHNV----EIELPVPDT

Query:  LPTSAESSRTSSSTWVELYIE
        LPTSAESS ++SSTW+E   E
Subjt:  LPTSAESSRTSSSTWVELYIE

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase2.5e-2055.65Show/hide
Query:  GNRIFIPSGYI------PLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTTKTMGVLGGPHYIVGLVNVGCTGRALHNVEIELPVPDTLPTSAESSRT
        GNR+ + +  I      PLSTLSVL DNDAVVSAG+APLRQRRWEC  GPTT+                       +   VEIELPVPD LPTSAESSR+
Subjt:  GNRIFIPSGYI------PLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTTKTMGVLGGPHYIVGLVNVGCTGRALHNVEIELPVPDTLPTSAESSRT

Query:  SSSTWVELYIESVHI
        +SSTW+ELY ESVH+
Subjt:  SSSTWVELYIESVHI

A0A5A7UGD0 Uncharacterized protein2.4e-1036.81Show/hide
Query:  AEHFKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNSENLESVLSVFGAILGKSV--------GNRIFIPSGYI------PLSTLSVLRDNDAVVS
        +E+FKERVK EEEEEFRG  +++ KK         +  Q  +NL + ++++  ++G S         GNR  + +G +       LSTLSVLRDNDAV+ 
Subjt:  AEHFKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNSENLESVLSVFGAILGKSV--------GNRIFIPSGYI------PLSTLSVLRDNDAVVS

Query:  AGRAPLRQRRWECWAGPTTTKTMGVLGGPHYIVGLVNVGCTGRALHNVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
          +             PT                             VEIELP+PDTLPT AES  ++SSTW+ELY ESVH+
Subjt:  AGRAPLRQRRWECWAGPTTTKTMGVLGGPHYIVGLVNVGCTGRALHNVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

A0A5D3BTP3 Reverse transcriptase2.5e-2055.65Show/hide
Query:  GNRIFIPSGYI------PLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTTKTMGVLGGPHYIVGLVNVGCTGRALHNVEIELPVPDTLPTSAESSRT
        GNR+ + +  I      PLSTLSVL DNDAVVSAG+APLRQRRWEC  GPTT+                       +   VEIELPVPD LPTSAESSR+
Subjt:  GNRIFIPSGYI------PLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTTKTMGVLGGPHYIVGLVNVGCTGRALHNVEIELPVPDTLPTSAESSRT

Query:  SSSTWVELYIESVHI
        +SSTW+ELY ESVH+
Subjt:  SSSTWVELYIESVHI

A0A5D3CAC6 Uncharacterized protein8.9e-2643.44Show/hide
Query:  AEHFKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNSENLESVLSVFGAIL------------------GKS-------VGNRIFIPSGYI-----
        +EHF+ERVK EEEEEFRG  +++  KSSCKA+H RIW     +      VF   L                  GKS        GNR  + +G +     
Subjt:  AEHFKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNSENLESVLSVFGAIL------------------GKS-------VGNRIFIPSGYI-----

Query:  -----------------------PLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTTKTMGVLGGPHYIVGLVNVGCTGRALHNV----EIELPVPDT
                               PLSTLSVLRDNDAVVS G+                 K  GV GGPHYIVGLVNVGCTGR LH++    EIEL VPDT
Subjt:  -----------------------PLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTTKTMGVLGGPHYIVGLVNVGCTGRALHNV----EIELPVPDT

Query:  LPTSAESSRTSSSTWVELYIE
        LPTSAESS ++SSTW+E   E
Subjt:  LPTSAESSRTSSSTWVELYIE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAAAACAAGAGGAAGAAAAGGGAGAGAAGTGGAAGAGGAGGAGGAAGTGTCTGTTACGCCTGAAGCACCGAAGAAGAAGGCGGAGAAGAAAAGAACGCCTGAAGA
AAGGGAAGTCAAGCGGCTTAGAAGATTACAAGAGGCCGAGGTTTCTGAAGTACTGCAGAAGGTCATCGAAGATATTGCAGAGGAGGTACTTATTGAGGAAGAACCGAAAA
ATCCCGAAAGAGAAAAAGATCTGGAAAAGACTGTTGAAACAGAGCAAGAGATACAAGAAAAGGCAGAAGAGGATGTGCAAGAGCGAGGTAATCATGAAAAAGAAGTTCAA
GAGGAGAAAGAAGAGGCTGAAAAGAAAGCCGTAGAAGATGAAGCTGAAAAGAAGACCCATGAAGACAGAGGCAGAGGTATTCTAGGAGCAGAAGTTGAAGCAGAGGTGGC
AGAGCCAGAGGAGCGGAGGTGGTGCACCAGTTCTATGCGAACATTGACGTGGAAAAAGGCCGCCTATCTAAAGAAGGAAGCCAATACTTGGATGAGATTTATCAAGCAGA
GGCTGCTTCCAACAACTCACGACTCCACAGTTTCTCGGGAAAGAGTTCTTTTGGCTTTTGCGATTTTGAGGTCTCTTAGCATTGACGTGGCCAGCAGGCAAGAGTTTGCC
GAGAGGCAAGCTCAAACCTACTGGACTTATGTTAAAAGACGTGATGTCGCATTAAGGAAAGCACTGCAAGCAAACTTTTCCAAGCCTTATCAAGACTTTCCTGTATTCCC
TGATGATTTGTTGAACCCTTGGACCCCACCACCACCCATTGAGAGAGAAGAGGAGGATGATGATGCTGAGCACTTTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAAT
TTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGG
GCAATTCTGGGCAAATCGGTTGGGAATCGCATTTTCATTCCTTCAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCG
GGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTT
GTACTGGGCGTGCCCTACACAACGTTGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTAT
ATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGTTAGATGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTGTTGTTGA
GAGTGAGTCCAGTCAGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCAAAAACAAGAGGAAGAAAAGGGAGAGAAGTGGAAGAGGAGGAGGAAGTGTCTGTTACGCCTGAAGCACCGAAGAAGAAGGCGGAGAAGAAAAGAACGCCTGAAGA
AAGGGAAGTCAAGCGGCTTAGAAGATTACAAGAGGCCGAGGTTTCTGAAGTACTGCAGAAGGTCATCGAAGATATTGCAGAGGAGGTACTTATTGAGGAAGAACCGAAAA
ATCCCGAAAGAGAAAAAGATCTGGAAAAGACTGTTGAAACAGAGCAAGAGATACAAGAAAAGGCAGAAGAGGATGTGCAAGAGCGAGGTAATCATGAAAAAGAAGTTCAA
GAGGAGAAAGAAGAGGCTGAAAAGAAAGCCGTAGAAGATGAAGCTGAAAAGAAGACCCATGAAGACAGAGGCAGAGGTATTCTAGGAGCAGAAGTTGAAGCAGAGGTGGC
AGAGCCAGAGGAGCGGAGGTGGTGCACCAGTTCTATGCGAACATTGACGTGGAAAAAGGCCGCCTATCTAAAGAAGGAAGCCAATACTTGGATGAGATTTATCAAGCAGA
GGCTGCTTCCAACAACTCACGACTCCACAGTTTCTCGGGAAAGAGTTCTTTTGGCTTTTGCGATTTTGAGGTCTCTTAGCATTGACGTGGCCAGCAGGCAAGAGTTTGCC
GAGAGGCAAGCTCAAACCTACTGGACTTATGTTAAAAGACGTGATGTCGCATTAAGGAAAGCACTGCAAGCAAACTTTTCCAAGCCTTATCAAGACTTTCCTGTATTCCC
TGATGATTTGTTGAACCCTTGGACCCCACCACCACCCATTGAGAGAGAAGAGGAGGATGATGATGCTGAGCACTTTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAAT
TTCGTGGTTTTGAGGTTGAAGAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAACTCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGG
GCAATTCTGGGCAAATCGGTTGGGAATCGCATTTTCATTCCTTCAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCG
GGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTT
GTACTGGGCGTGCCCTACACAACGTTGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTAT
ATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGTTAGATGTTGGGTCAGTTCAGATAGAACTAGCGGAGTATGGTCCGAGTGTTGTTGA
GAGTGAGTCCAGTCAGGACTAG
Protein sequenceShow/hide protein sequence
MAKTRGRKGREVEEEEEVSVTPEAPKKKAEKKRTPEEREVKRLRRLQEAEVSEVLQKVIEDIAEEVLIEEEPKNPEREKDLEKTVETEQEIQEKAEEDVQERGNHEKEVQ
EEKEEAEKKAVEDEAEKKTHEDRGRGILGAEVEAEVAEPEERRWCTSSMRTLTWKKAAYLKKEANTWMRFIKQRLLPTTHDSTVSRERVLLAFAILRSLSIDVASRQEFA
ERQAQTYWTYVKRRDVALRKALQANFSKPYQDFPVFPDDLLNPWTPPPPIEREEEDDDAEHFKERVKEEEEEEFRGFEVEEDKKSSCKASHSRIWVQNSENLESVLSVFG
AILGKSVGNRIFIPSGYIPLSTLSVLRDNDAVVSAGRAPLRQRRWECWAGPTTTKTMGVLGGPHYIVGLVNVGCTGRALHNVEIELPVPDTLPTSAESSRTSSSTWVELY
IESVHIVNVLFNVQEGQRLDVGSVQIELAEYGPSVVESESSQD