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Spg004843 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004843
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold9:22956845..22960894
RNA-Seq ExpressionSpg004843
SyntenySpg004843
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0004518 - nuclease activity (molecular function)
GO:0005488 - binding (molecular function)
GO:0016779 - nucleotidyltransferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]2.5e-2147.13Show/hide
Query:  VYKFNQKLYLIKGSREPRICVVCVRGIYGQIGWESRFPFFRTRGNRSSLQTRKLAKT---------------VEIELSVPDTLPTSAESSRSSSSTWVEL
        ++K NQKLYL+   R           I      +S  P    RGNR SLQTR+L KT               V IEL VPD LPTSAESS S+SSTW+EL
Subjt:  VYKFNQKLYLIKGSREPRICVVCVRGIYGQIGWESRFPFFRTRGNRSSLQTRKLAKT---------------VEIELSVPDTLPTSAESSRSSSSTWVEL

Query:  YIESVHI-------------VNVLINVIGGSTGIVRGDDVRWLHAIFRTELAGGPGG
        Y ESVH+             ++++ NV  GSTGIVRGDDV WLHA+FR +  GGPGG
Subjt:  YIESVHI-------------VNVLINVIGGSTGIVRGDDVRWLHAIFRTELAGGPGG

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]9.4e-2146.25Show/hide
Query:  VYKFNQKLYLIKGSREPRICVVCVRGIYGQIG-WESRFPFFRTRGNRSSLQTRKLAKT-----------------VEIELSVPDTLPTSAESSRSSSSTW
        V+K NQKLYL   S              G+ G W+        RGNRSSLQ+ +L  T                 VEIEL VPDTLPTSAESS S+SSTW
Subjt:  VYKFNQKLYLIKGSREPRICVVCVRGIYGQIG-WESRFPFFRTRGNRSSLQTRKLAKT-----------------VEIELSVPDTLPTSAESSRSSSSTW

Query:  VELYIESVHI-------------VNVLINVIGGSTGIVRGDDVRWLHAIFRTELAGGPGG
        +ELY ESVH+             ++++ +V+ GSTGIVRGDDV WLHA+FR +  GGPGG
Subjt:  VELYIESVHI-------------VNVLINVIGGSTGIVRGDDVRWLHAIFRTELAGGPGG

KAA0067117.1 hypothetical protein E6C27_scaffold38G001760 [Cucumis melo var. makuwa]1.5e-2345.29Show/hide
Query:  VYKFNQKLYLIKGSREPRICVVCVRGIYGQIGWESRFPFFRT--------------RGNRSSLQTRKLAKT-----------------VEIELSVPDTLP
        V+K NQKLYLI+  REPRI      G +        F F +               RGNRSSLQT +L KT                 VEIEL VPDTLP
Subjt:  VYKFNQKLYLIKGSREPRICVVCVRGIYGQIGWESRFPFFRT--------------RGNRSSLQTRKLAKT-----------------VEIELSVPDTLP

Query:  TSAESSRSSSSTWVELYIESVHIVNVLINVIG----------GSTGIVRGDDVRWLHAIFRTELAGGPGG
        TSAES  S+SSTW+ELY E VH+  +                GS GIVRGDDV WLH +FR ++AGGPGG
Subjt:  TSAESSRSSSSTWVELYIESVHIVNVLINVIG----------GSTGIVRGDDVRWLHAIFRTELAGGPGG

TYK11835.1 uncharacterized protein E5676_scaffold152G00520 [Cucumis melo var. makuwa]3.6e-2051.16Show/hide
Query:  RGNRSSLQTRKLAKTV---------------EIELSVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLINVIGGSTGIVRGDDVRW
        RGNR SLQT +L KTV                IEL VPDTLPTSAESS S+SSTW+ELY ESVH+             ++++ NV  GSTGIVRGDDV W
Subjt:  RGNRSSLQTRKLAKTV---------------EIELSVPDTLPTSAESSRSSSSTWVELYIESVHI-------------VNVLINVIGGSTGIVRGDDVRW

Query:  LHAIFRTELAGGPGGDEENGPKNWRNQAQ
        LHA+FR +  GGPGG    G   W +  Q
Subjt:  LHAIFRTELAGGPGGDEENGPKNWRNQAQ

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]9.4e-2146.25Show/hide
Query:  VYKFNQKLYLIKGSREPRICVVCVRGIYGQIG-WESRFPFFRTRGNRSSLQTRKLAKT-----------------VEIELSVPDTLPTSAESSRSSSSTW
        V+K NQKLYL   S              G+ G W+        RGNRSSLQ+ +L  T                 VEIEL VPDTLPTSAESS S+SSTW
Subjt:  VYKFNQKLYLIKGSREPRICVVCVRGIYGQIG-WESRFPFFRTRGNRSSLQTRKLAKT-----------------VEIELSVPDTLPTSAESSRSSSSTW

Query:  VELYIESVHI-------------VNVLINVIGGSTGIVRGDDVRWLHAIFRTELAGGPGG
        +ELY ESVH+             ++++ +V+ GSTGIVRGDDV WLHA+FR +  GGPGG
Subjt:  VELYIESVHI-------------VNVLINVIGGSTGIVRGDDVRWLHAIFRTELAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7UAH6 CCHC-type domain-containing protein1.7e-2062.89Show/hide
Query:  RGNRSSLQTRKLAKTVEIELSVPDTLPTSAESSRSSSSTWVELYIESVHI---------VNVLINVI-GGSTGIVRGDDVRWLHAIFRTELAGGPGG
        RGNR +L T KL KTVEIEL VPDTLPTSAESS+S+SSTW+ELY ESVH+         V V   V   GS GIVRGDD+ WLHA+F  + AG PGG
Subjt:  RGNRSSLQTRKLAKTVEIELSVPDTLPTSAESSRSSSSTWVELYIESVHI---------VNVLINVI-GGSTGIVRGDDVRWLHAIFRTELAGGPGG

A0A5A7UT17 CCHC-type domain-containing protein1.2e-2147.13Show/hide
Query:  VYKFNQKLYLIKGSREPRICVVCVRGIYGQIGWESRFPFFRTRGNRSSLQTRKLAKT---------------VEIELSVPDTLPTSAESSRSSSSTWVEL
        ++K NQKLYL+   R           I      +S  P    RGNR SLQTR+L KT               V IEL VPD LPTSAESS S+SSTW+EL
Subjt:  VYKFNQKLYLIKGSREPRICVVCVRGIYGQIGWESRFPFFRTRGNRSSLQTRKLAKT---------------VEIELSVPDTLPTSAESSRSSSSTWVEL

Query:  YIESVHI-------------VNVLINVIGGSTGIVRGDDVRWLHAIFRTELAGGPGG
        Y ESVH+             ++++ NV  GSTGIVRGDDV WLHA+FR +  GGPGG
Subjt:  YIESVHI-------------VNVLINVIGGSTGIVRGDDVRWLHAIFRTELAGGPGG

A0A5A7V9N3 Reverse transcriptase4.5e-2146.25Show/hide
Query:  VYKFNQKLYLIKGSREPRICVVCVRGIYGQIG-WESRFPFFRTRGNRSSLQTRKLAKT-----------------VEIELSVPDTLPTSAESSRSSSSTW
        V+K NQKLYL   S              G+ G W+        RGNRSSLQ+ +L  T                 VEIEL VPDTLPTSAESS S+SSTW
Subjt:  VYKFNQKLYLIKGSREPRICVVCVRGIYGQIG-WESRFPFFRTRGNRSSLQTRKLAKT-----------------VEIELSVPDTLPTSAESSRSSSSTW

Query:  VELYIESVHI-------------VNVLINVIGGSTGIVRGDDVRWLHAIFRTELAGGPGG
        +ELY ESVH+             ++++ +V+ GSTGIVRGDDV WLHA+FR +  GGPGG
Subjt:  VELYIESVHI-------------VNVLINVIGGSTGIVRGDDVRWLHAIFRTELAGGPGG

A0A5A7VIY9 Uncharacterized protein7.5e-2445.29Show/hide
Query:  VYKFNQKLYLIKGSREPRICVVCVRGIYGQIGWESRFPFFRT--------------RGNRSSLQTRKLAKT-----------------VEIELSVPDTLP
        V+K NQKLYLI+  REPRI      G +        F F +               RGNRSSLQT +L KT                 VEIEL VPDTLP
Subjt:  VYKFNQKLYLIKGSREPRICVVCVRGIYGQIGWESRFPFFRT--------------RGNRSSLQTRKLAKT-----------------VEIELSVPDTLP

Query:  TSAESSRSSSSTWVELYIESVHIVNVLINVIG----------GSTGIVRGDDVRWLHAIFRTELAGGPGG
        TSAES  S+SSTW+ELY E VH+  +                GS GIVRGDDV WLH +FR ++AGGPGG
Subjt:  TSAESSRSSSSTWVELYIESVHIVNVLINVIG----------GSTGIVRGDDVRWLHAIFRTELAGGPGG

A0A5D3DSY7 Putative Retrotransposon protein4.5e-2146.25Show/hide
Query:  VYKFNQKLYLIKGSREPRICVVCVRGIYGQIG-WESRFPFFRTRGNRSSLQTRKLAKT-----------------VEIELSVPDTLPTSAESSRSSSSTW
        V+K NQKLYL   S              G+ G W+        RGNRSSLQ+ +L  T                 VEIEL VPDTLPTSAESS S+SSTW
Subjt:  VYKFNQKLYLIKGSREPRICVVCVRGIYGQIG-WESRFPFFRTRGNRSSLQTRKLAKT-----------------VEIELSVPDTLPTSAESSRSSSSTW

Query:  VELYIESVHI-------------VNVLINVIGGSTGIVRGDDVRWLHAIFRTELAGGPGG
        +ELY ESVH+             ++++ +V+ GSTGIVRGDDV WLHA+FR +  GGPGG
Subjt:  VELYIESVHI-------------VNVLINVIGGSTGIVRGDDVRWLHAIFRTELAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGAGGGTGGGGCCCCTTGTTCAAGTCTCGGAGTCAACACTTAAGGGAACACCCTTTTTGCCGCATCCATAGTGTCGCCAGGATAAGAGCACAGGATTTTCGAACAAA
GCATGAGGATCTCTGGTTTTTCGAGAATTCTGGGGTGTACAAGTTCAATCAGAAGCTCTATTTGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGG
GCATTTATGGACAAATCGGTTGGGAATCTCGTTTTCCTTTCTTCAGGACAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCTC
TCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAAATGTTTTGATCAACGT
TATAGGAGGGTCAACGGGTATTGTTAGAGGAGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTGAGCTAGCAGGTGGTCCAGGAGGGGATGAAGAAAATGGGCCAA
AGAACTGGAGAAATCAAGCCCAATCCAGCCCAAATCCAAGCCTTGCAGTTTCCCAGCCGAGGGTTAACGTCTCGACGCTGCCCTCAGCGTCTAACCGCTGCAACAACTTG
GAGATCAAGCCAATTATGTCACTGTGTCTCGACGTTGTTCGCACTGGAACACTATTTAAAGCAACATTGGGCCTCCGGTTTCTCCATCAAGCAATCTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGAGGGTGGGGCCCCTTGTTCAAGTCTCGGAGTCAACACTTAAGGGAACACCCTTTTTGCCGCATCCATAGTGTCGCCAGGATAAGAGCACAGGATTTTCGAACAAA
GCATGAGGATCTCTGGTTTTTCGAGAATTCTGGGGTGTACAAGTTCAATCAGAAGCTCTATTTGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGG
GCATTTATGGACAAATCGGTTGGGAATCTCGTTTTCCTTTCTTCAGGACAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCTC
TCGGTGCCTGATACACTACCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAAATGTTTTGATCAACGT
TATAGGAGGGTCAACGGGTATTGTTAGAGGAGACGATGTTCGTTGGCTTCACGCCATCTTCCGGACTGAGCTAGCAGGTGGTCCAGGAGGGGATGAAGAAAATGGGCCAA
AGAACTGGAGAAATCAAGCCCAATCCAGCCCAAATCCAAGCCTTGCAGTTTCCCAGCCGAGGGTTAACGTCTCGACGCTGCCCTCAGCGTCTAACCGCTGCAACAACTTG
GAGATCAAGCCAATTATGTCACTGTGTCTCGACGTTGTTCGCACTGGAACACTATTTAAAGCAACATTGGGCCTCCGGTTTCTCCATCAAGCAATCTCCTAG
Protein sequenceShow/hide protein sequence
MRGWGPLFKSRSQHLREHPFCRIHSVARIRAQDFRTKHEDLWFFENSGVYKFNQKLYLIKGSREPRICVVCVRGIYGQIGWESRFPFFRTRGNRSSLQTRKLAKTVEIEL
SVPDTLPTSAESSRSSSSTWVELYIESVHIVNVLINVIGGSTGIVRGDDVRWLHAIFRTELAGGPGGDEENGPKNWRNQAQSSPNPSLAVSQPRVNVSTLPSASNRCNNL
EIKPIMSLCLDVVRTGTLFKATLGLRFLHQAIS