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Spg004853 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004853
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
Genome locationscaffold9:19539541..19541165
RNA-Seq ExpressionSpg004853
SyntenySpg004853
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047869.1 hypothetical protein E6C27_scaffold133G001380 [Cucumis melo var. makuwa]1.0e-0750Show/hide
Query:  VKAINLD-DVTNERVRTLVQYLESVLKGTTSLLSLIRVGVNSILQDYVPNYLSSLIPKMVGLLSRRTRATLTHANQRTILNKKKFIVNSGLRSSYL
        V+ INL+    NE+V  LVQ L+SVLKGTT LLS   VGVNS+L        S L PK    L +R +   T+ + R + N++KFIV+SGLRSSYL
Subjt:  VKAINLD-DVTNERVRTLVQYLESVLKGTTSLLSLIRVGVNSILQDYVPNYLSSLIPKMVGLLSRRTRATLTHANQRTILNKKKFIVNSGLRSSYL
TYK16320.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]4.9e-0560Show/hide
Query:  YVPNYLSSLIPKMVGLLSRRTRATLTHANQRTILNKKKFIVNSGLRSSYL
        YVP+Y   L P+M GLL +R RA LT+A+ R +LN++KFIV+ GLRSSYL
Subjt:  YVPNYLSSLIPKMVGLLSRRTRATLTHANQRTILNKKKFIVNSGLRSSYL
TrEMBL top hitse value%identityAlignment
A0A5A7U348 Uncharacterized protein5.1e-0850Show/hide
Query:  VKAINLD-DVTNERVRTLVQYLESVLKGTTSLLSLIRVGVNSILQDYVPNYLSSLIPKMVGLLSRRTRATLTHANQRTILNKKKFIVNSGLRSSYL
        V+ INL+    NE+V  LVQ L+SVLKGTT LLS   VGVNS+L        S L PK    L +R +   T+ + R + N++KFIV+SGLRSSYL
Subjt:  VKAINLD-DVTNERVRTLVQYLESVLKGTTSLLSLIRVGVNSILQDYVPNYLSSLIPKMVGLLSRRTRATLTHANQRTILNKKKFIVNSGLRSSYL
A0A5D3CRT6 Uncharacterized protein7.6e-0447.44Show/hide
Query:  VQYLESVLKGTTSLLSLIRVGVNSILQDYVPNYLSSLIPKMVGLLSRRTRATLTHANQRTILNKKKFIVNSGLRSSYL
        VQ L+SVLKGTT LL+L  VGVNSIL    P    SL  K             T+A+ R I  +++F V+SGLR SYL
Subjt:  VQYLESVLKGTTSLLSLIRVGVNSILQDYVPNYLSSLIPKMVGLLSRRTRATLTHANQRTILNKKKFIVNSGLRSSYL
A0A5D3CY86 Retrotransposon protein, putative, Ty3-gypsy subclass2.4e-0560Show/hide
Query:  YVPNYLSSLIPKMVGLLSRRTRATLTHANQRTILNKKKFIVNSGLRSSYL
        YVP+Y   L P+M GLL +R RA LT+A+ R +LN++KFIV+ GLRSSYL
Subjt:  YVPNYLSSLIPKMVGLLSRRTRATLTHANQRTILNKKKFIVNSGLRSSYL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCGACCACGAGAGTTTGGTGAAGGCGATAAATCTGGATGATGTGACCAATGAGAGGGTGAGGACCCTTGTTCAATACCTGGAGTCAGTACTTAAGGGAACAACCTC
TCTACTATCCCTAATACGGGTAGGAGTGAATTCCATCTTGCAAGACTATGTCCCCAACTATCTATCCAGTCTCATCCCCAAAATGGTAGGCTTGTTGAGTCGACGAACTC
GGGCCACTCTCACCCATGCAAATCAAAGGACAATCCTGAATAAAAAGAAGTTCATAGTTAACTCAGGATTAAGATCGAGTTACCTGTTAGCCGGAAAAGAGGGTAAAATA
GGAATTGAAAGGCAAAATCGTTGTGCCGTGGAAAGAACCACTGCCTTGAAAGCAAAACTCGGCACGACCTCAGTGCTAAAACGTTTAACCGCCGGTATGCTCCCCAAGGT
TAACACAACCTCCGAAACAGACGTGCACTCGTCGGGATGGAGTGGAATCAATCTCGTGCTCAGGAAAGGAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTTCGACCACGAGAGTTTGGTGAAGGCGATAAATCTGGATGATGTGACCAATGAGAGGGTGAGGACCCTTGTTCAATACCTGGAGTCAGTACTTAAGGGAACAACCTC
TCTACTATCCCTAATACGGGTAGGAGTGAATTCCATCTTGCAAGACTATGTCCCCAACTATCTATCCAGTCTCATCCCCAAAATGGTAGGCTTGTTGAGTCGACGAACTC
GGGCCACTCTCACCCATGCAAATCAAAGGACAATCCTGAATAAAAAGAAGTTCATAGTTAACTCAGGATTAAGATCGAGTTACCTGTTAGCCGGAAAAGAGGGTAAAATA
GGAATTGAAAGGCAAAATCGTTGTGCCGTGGAAAGAACCACTGCCTTGAAAGCAAAACTCGGCACGACCTCAGTGCTAAAACGTTTAACCGCCGGTATGCTCCCCAAGGT
TAACACAACCTCCGAAACAGACGTGCACTCGTCGGGATGGAGTGGAATCAATCTCGTGCTCAGGAAAGGAAAATGA
Protein sequenceShow/hide protein sequence
MFDHESLVKAINLDDVTNERVRTLVQYLESVLKGTTSLLSLIRVGVNSILQDYVPNYLSSLIPKMVGLLSRRTRATLTHANQRTILNKKKFIVNSGLRSSYLLAGKEGKI
GIERQNRCAVERTTALKAKLGTTSVLKRLTAGMLPKVNTTSETDVHSSGWSGINLVLRKGK