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Spg004857 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004857
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold9:22076337..22081485
RNA-Seq ExpressionSpg004857
SyntenySpg004857
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0053276.1 uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa]2.0e-1940.62Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSDHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFI------RFELHRRNQEVSCRVFENKELD
        TKPTTD  IFQ NFI FLHHF  KLS++F+ERVK EEEEEFRGLRLKK+ K   ++   +    T+NLWF +         +  R    S +  +  +  
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSDHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFI------RFELHRRNQEVSCRVFENKELD

Query:  MYFINFGSVLRKLWVLEV--------RVEIELPVLDTLPTSAESFRSSSSTWFNVSVGSTGI-----VRGDDVCWLHAVFRAKLAGGPGGGV
        ++ ++  SVLR    + +        +VEIELP+ DTLPT AESF S+SSTW  +   S  +     +    +  LH VF   ++ GP G +
Subjt:  MYFINFGSVLRKLWVLEV--------RVEIELPVLDTLPTSAESFRSSSSTWFNVSVGSTGI-----VRGDDVCWLHAVFRAKLAGGPGGGV

TYK04298.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]1.5e-1939.52Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSDHFEERVKEEEEEEFRGLRLKKIGKS---SCKASHCRIWVQTVNLWFFIRFELHRRNQEVSCRVFENK------
        TKPTT   IFQ NFISFLHHFP KL +HFEERVK EEEEEFR ++ +   +S   S K     ++   +++      E+H+ NQ++   +   K      
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSDHFEERVKEEEEEEFRGLRLKKIGKS---SCKASHCRIWVQTVNLWFFIRFELHRRNQEVSCRVFENK------

Query:  ------------ELDMYFINFGSVLRKLWVLEVRVEIELPVLDTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAK----LAGGPGGGVTH
                    ELD   I   S L  L   +  VEIELPV D LPTSA+S  S+       S+GSTGIVRGDDV WL   F  +      G  G  V  
Subjt:  ------------ELDMYFINFGSVLRKLWVLEVRVEIELPVLDTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAK----LAGGPGGGVTH

Query:  DDLGNLVPIL
         +  +++  L
Subjt:  DDLGNLVPIL

TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]1.5e-3038.08Show/hide
Query:  IFQPNFISFLHHFPFKLSDHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFF---------------
        +FQPNFISFLHHFP KLS+HFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW                      VQ  N   +               
Subjt:  IFQPNFISFLHHFPFKLSDHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFF---------------

Query:  --------------IRFELHRRNQEVSCRVFENKELDMYF--------------------------------------INFGSVLRKLWVLEVRVEIELP
                      I   +    + +S R++      + F                                      +N G   R L  ++  +EIEL 
Subjt:  --------------IRFELHRRNQEVSCRVFENKELDMYF--------------------------------------INFGSVLRKLWVLEVRVEIELP

Query:  VLDTLPTSAESFRSSSSTWFNV-------------------SVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTHDDLGNL
        V DTLPTSAES  S+SSTW                       V S GIVR +DVCWLHAVFRAK+AGG GGGVT    G+L
Subjt:  VLDTLPTSAESFRSSSSTWFNV-------------------SVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTHDDLGNL

TYK11725.1 uncharacterized protein E5676_scaffold304G00370 [Cucumis melo var. makuwa]8.4e-1845.14Show/hide
Query:  ELHRRNQE---VSCRVFENKELDMYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVLDTLPTSAE
        E+H+  Q+   VSCRV EN++  +YFIN G VLRKLWVLEVR                                          VEIELPV DTLPT   
Subjt:  ELHRRNQE---VSCRVFENKELDMYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVLDTLPTSAE

Query:  SFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
              +  +    GS GIVRGDDVCWLHAV RAK+AGGPGGGV
Subjt:  SFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

TYK14495.1 putative polyprotein [Cucumis melo var. makuwa]4.5e-1936.99Show/hide
Query:  PFKLSDHFEER-----VKEEEEEEFRG--LRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQE---VSCRVFENKELDMYFINFGSVLRKLWVLE
        P +L + F  R     + + +E+  R   +RL K    S K     ++   +++      E+H+ NQ+   VSCRVFEN+   +YFINFG VLRKLWVLE
Subjt:  PFKLSDHFEER-----VKEEEEEEFRG--LRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQE---VSCRVFENKELDMYFINFGSVLRKLWVLE

Query:  VR-----------------------------------------------------------VEIELPVLDTLPTSAESFRSSSSTWFNVSVGSTGIVRGD
         R                                                           VEIELPV DTLPTSAESF S+          S GIVRGD
Subjt:  VR-----------------------------------------------------------VEIELPVLDTLPTSAESFRSSSSTWFNVSVGSTGIVRGD

Query:  DVCWLHAVFRAKLAGGPGG
        DVCWLHAVFRAK AG PGG
Subjt:  DVCWLHAVFRAKLAGGPGG

TrEMBL top hitse value%identityAlignment
A0A5A7UGD0 Uncharacterized protein9.7e-2040.62Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSDHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFI------RFELHRRNQEVSCRVFENKELD
        TKPTTD  IFQ NFI FLHHF  KLS++F+ERVK EEEEEFRGLRLKK+ K   ++   +    T+NLWF +         +  R    S +  +  +  
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSDHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFI------RFELHRRNQEVSCRVFENKELD

Query:  MYFINFGSVLRKLWVLEV--------RVEIELPVLDTLPTSAESFRSSSSTWFNVSVGSTGI-----VRGDDVCWLHAVFRAKLAGGPGGGV
        ++ ++  SVLR    + +        +VEIELP+ DTLPT AESF S+SSTW  +   S  +     +    +  LH VF   ++ GP G +
Subjt:  MYFINFGSVLRKLWVLEV--------RVEIELPVLDTLPTSAESFRSSSSTWFNVSVGSTGI-----VRGDDVCWLHAVFRAKLAGGPGGGV

A0A5D3BZ50 Pentatricopeptide repeat-containing protein7.5e-2039.52Show/hide
Query:  TKPTTDNHIFQPNFISFLHHFPFKLSDHFEERVKEEEEEEFRGLRLKKIGKS---SCKASHCRIWVQTVNLWFFIRFELHRRNQEVSCRVFENK------
        TKPTT   IFQ NFISFLHHFP KL +HFEERVK EEEEEFR ++ +   +S   S K     ++   +++      E+H+ NQ++   +   K      
Subjt:  TKPTTDNHIFQPNFISFLHHFPFKLSDHFEERVKEEEEEEFRGLRLKKIGKS---SCKASHCRIWVQTVNLWFFIRFELHRRNQEVSCRVFENK------

Query:  ------------ELDMYFINFGSVLRKLWVLEVRVEIELPVLDTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAK----LAGGPGGGVTH
                    ELD   I   S L  L   +  VEIELPV D LPTSA+S  S+       S+GSTGIVRGDDV WL   F  +      G  G  V  
Subjt:  ------------ELDMYFINFGSVLRKLWVLEVRVEIELPVLDTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAK----LAGGPGGGVTH

Query:  DDLGNLVPIL
         +  +++  L
Subjt:  DDLGNLVPIL

A0A5D3CAC6 Uncharacterized protein7.2e-3138.08Show/hide
Query:  IFQPNFISFLHHFPFKLSDHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFF---------------
        +FQPNFISFLHHFP KLS+HFEERVK EEEEEFRGLRLKKIGKSSCKA+HCRIW                      VQ  N   +               
Subjt:  IFQPNFISFLHHFPFKLSDHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIW----------------------VQTVNLWFF---------------

Query:  --------------IRFELHRRNQEVSCRVFENKELDMYF--------------------------------------INFGSVLRKLWVLEVRVEIELP
                      I   +    + +S R++      + F                                      +N G   R L  ++  +EIEL 
Subjt:  --------------IRFELHRRNQEVSCRVFENKELDMYF--------------------------------------INFGSVLRKLWVLEVRVEIELP

Query:  VLDTLPTSAESFRSSSSTWFNV-------------------SVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTHDDLGNL
        V DTLPTSAES  S+SSTW                       V S GIVR +DVCWLHAVFRAK+AGG GGGVT    G+L
Subjt:  VLDTLPTSAESFRSSSSTWFNV-------------------SVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTHDDLGNL

A0A5D3CJL4 Retrotrans_gag domain-containing protein4.1e-1845.14Show/hide
Query:  ELHRRNQE---VSCRVFENKELDMYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVLDTLPTSAE
        E+H+  Q+   VSCRV EN++  +YFIN G VLRKLWVLEVR                                          VEIELPV DTLPT   
Subjt:  ELHRRNQE---VSCRVFENKELDMYFINFGSVLRKLWVLEVR------------------------------------------VEIELPVLDTLPTSAE

Query:  SFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV
              +  +    GS GIVRGDDVCWLHAV RAK+AGGPGGGV
Subjt:  SFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGV

A0A5D3CSJ5 Putative polyprotein2.2e-1936.99Show/hide
Query:  PFKLSDHFEER-----VKEEEEEEFRG--LRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQE---VSCRVFENKELDMYFINFGSVLRKLWVLE
        P +L + F  R     + + +E+  R   +RL K    S K     ++   +++      E+H+ NQ+   VSCRVFEN+   +YFINFG VLRKLWVLE
Subjt:  PFKLSDHFEER-----VKEEEEEEFRG--LRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQE---VSCRVFENKELDMYFINFGSVLRKLWVLE

Query:  VR-----------------------------------------------------------VEIELPVLDTLPTSAESFRSSSSTWFNVSVGSTGIVRGD
         R                                                           VEIELPV DTLPTSAESF S+          S GIVRGD
Subjt:  VR-----------------------------------------------------------VEIELPVLDTLPTSAESFRSSSSTWFNVSVGSTGIVRGD

Query:  DVCWLHAVFRAKLAGGPGG
        DVCWLHAVFRAK AG PGG
Subjt:  DVCWLHAVFRAKLAGGPGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGATCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTAAGTTGTAGAGTGTTCGAAAATAAAGAGTTGGATATGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTA
TGGGTATTGGAAGTTAGGGTAGAGATCGAGCTCCCGGTGCTTGATACACTGCCAACGTCTGCTGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTCAACGTTTCAGTAGG
GTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACACATGATGACCTAGGCAACT
TAGTCCCAATCTTGAGTGGGTTATGGACTCCTGTTCACGAGGGATTGTCTTTTGATTTGTATGGGTCCATTAGGTCCCACTGCTTTATCATAGTGGTGGTGTCCCATTTG
GTAAGTCTTCTTGATCGTGGTGCTACTGTAGAAATCACAAAGAAGAAGATCGTGATTCAAGGAGTTGGTGAAACCGGTCAAGTCGTCATCAACGAGAGTAAGACGCATCA
GCGTGGAGATGCTGTTCCACGACGACTCAAAGTTAATATGATGATCAACATGCGGCTAGGGTTTGCAAAACGCATGGTTAAGGCGTGGTCCAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCACAAAGCCCACCACCGACAACCACATTTTTCAGCCCAATTTCATTTCATTTCTCCATCATTTTCCATTCAAACTTTCAGATCACTTTGAGGAGAGAGTGAA
GGAAGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGAAAAAGTTCATGCAAAGCCAGCCATTGCAGAATCTGGGTGCAAACTGTCAACCTCTGGTTTT
TTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTAAGTTGTAGAGTGTTCGAAAATAAAGAGTTGGATATGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTA
TGGGTATTGGAAGTTAGGGTAGAGATCGAGCTCCCGGTGCTTGATACACTGCCAACGTCTGCTGAAAGTTTTAGATCAAGCTCCAGTACGTGGTTCAACGTTTCAGTAGG
GTCAACAGGGATCGTTAGAGGTGACGATGTCTGTTGGCTTCACGCCGTCTTTCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACACATGATGACCTAGGCAACT
TAGTCCCAATCTTGAGTGGGTTATGGACTCCTGTTCACGAGGGATTGTCTTTTGATTTGTATGGGTCCATTAGGTCCCACTGCTTTATCATAGTGGTGGTGTCCCATTTG
GTAAGTCTTCTTGATCGTGGTGCTACTGTAGAAATCACAAAGAAGAAGATCGTGATTCAAGGAGTTGGTGAAACCGGTCAAGTCGTCATCAACGAGAGTAAGACGCATCA
GCGTGGAGATGCTGTTCCACGACGACTCAAAGTTAATATGATGATCAACATGCGGCTAGGGTTTGCAAAACGCATGGTTAAGGCGTGGTCCAGCTGA
Protein sequenceShow/hide protein sequence
MDSTKPTTDNHIFQPNFISFLHHFPFKLSDHFEERVKEEEEEEFRGLRLKKIGKSSCKASHCRIWVQTVNLWFFIRFELHRRNQEVSCRVFENKELDMYFINFGSVLRKL
WVLEVRVEIELPVLDTLPTSAESFRSSSSTWFNVSVGSTGIVRGDDVCWLHAVFRAKLAGGPGGGVTHDDLGNLVPILSGLWTPVHEGLSFDLYGSIRSHCFIIVVVSHL
VSLLDRGATVEITKKKIVIQGVGETGQVVINESKTHQRGDAVPRRLKVNMMINMRLGFAKRMVKAWSS