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Spg004885 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004885
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationscaffold9:19834790..19837375
RNA-Seq ExpressionSpg004885
SyntenySpg004885
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]1.6e-0769.09Show/hide
Query:  LFGLSYIGRNKRPRGNRSSLQTRKLAKTVEIELPVRDTLPTSAESSRSSSSSTLQ
        LF LSY    KRPRGNR SLQT KL KTVEIELP+ DTLPT AES  S+SS+ L+
Subjt:  LFGLSYIGRNKRPRGNRSSLQTRKLAKTVEIELPVRDTLPTSAESSRSSSSSTLQ

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.6e-0740.48Show/hide
Query:  LFGLSYIGRNKRPRGNRSSLQTRKLAKT-----------------VEIELPVRDTLPTSAESSRSSSSSTLQ----------------------------
        LFGL Y    KRPRGNR+SLQT +L KT                 VEIELPV DTLPTSAESS S+SS+ L+                            
Subjt:  LFGLSYIGRNKRPRGNRSSLQTRKLAKT-----------------VEIELPVRDTLPTSAESSRSSSSSTLQ----------------------------

Query:  -EGQRVSLEEDDVHWLHAIFQTKLAG
          G    +  D+V WLHA+F  K AG
Subjt:  -EGQRVSLEEDDVHWLHAIFQTKLAG

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]5.8e-1040.43Show/hide
Query:  MAESGFNMPISGFLFGLSYI----GRNKR------------------PRGNRSSLQTRKLAKTVEIELPVRDTLPTSAESSRSSSSSTLQ----------
        +AESG N      LFGLSY+    G + R                  PRGNR +L T KL KTVEIELPV DTLPTSAESS+S+SS+ L+          
Subjt:  MAESGFNMPISGFLFGLSYI----GRNKR------------------PRGNRSSLQTRKLAKTVEIELPVRDTLPTSAESSRSSSSSTLQ----------

Query:  ----------------EGQRVSLEEDDVHWLHAIFQTKLAG
                        EG    +  DD+ WLHA+F  K AG
Subjt:  ----------------EGQRVSLEEDDVHWLHAIFQTKLAG

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]1.2e-0752.33Show/hide
Query:  RPRGNRSSLQTRKLAKT-----------------VEIELPVRDTLPTSAESSRSSSSSTLQEGQRVSLEEDDVHWLHAIFQTKLAG
        RPRGNR SLQT KL KT                 VEIELPV DTLPTSAES  S+S ST        +  DDV WLHA+F+ K AG
Subjt:  RPRGNRSSLQTRKLAKT-----------------VEIELPVRDTLPTSAESSRSSSSSTLQEGQRVSLEEDDVHWLHAIFQTKLAG

TYK01208.1 uncharacterized protein E5676_scaffold2044G00560 [Cucumis melo var. makuwa]7.9e-0747Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPVRDTLPTSAESSRSSSSSTLQEGQRVSLEEDDVHWLHAIFQTKLAGEIPKRKLKKCTTLER
        PRGNRSSLQT KL KT                 VEIELPV DT PTSAESS S+SSS         +  DDV WLHA+F+ K+    P     +C+ L R
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPVRDTLPTSAESSRSSSSSTLQEGQRVSLEEDDVHWLHAIFQTKLAGEIPKRKLKKCTTLER

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein7.7e-0869.09Show/hide
Query:  LFGLSYIGRNKRPRGNRSSLQTRKLAKTVEIELPVRDTLPTSAESSRSSSSSTLQ
        LF LSY    KRPRGNR SLQT KL KTVEIELP+ DTLPT AES  S+SS+ L+
Subjt:  LFGLSYIGRNKRPRGNRSSLQTRKLAKTVEIELPVRDTLPTSAESSRSSSSSTLQ

A0A5A7U9X4 DNA/RNA polymerases superfamily protein7.7e-0840.48Show/hide
Query:  LFGLSYIGRNKRPRGNRSSLQTRKLAKT-----------------VEIELPVRDTLPTSAESSRSSSSSTLQ----------------------------
        LFGL Y    KRPRGNR+SLQT +L KT                 VEIELPV DTLPTSAESS S+SS+ L+                            
Subjt:  LFGLSYIGRNKRPRGNRSSLQTRKLAKT-----------------VEIELPVRDTLPTSAESSRSSSSSTLQ----------------------------

Query:  -EGQRVSLEEDDVHWLHAIFQTKLAG
          G    +  D+V WLHA+F  K AG
Subjt:  -EGQRVSLEEDDVHWLHAIFQTKLAG

A0A5A7UAH6 CCHC-type domain-containing protein2.8e-1040.43Show/hide
Query:  MAESGFNMPISGFLFGLSYI----GRNKR------------------PRGNRSSLQTRKLAKTVEIELPVRDTLPTSAESSRSSSSSTLQ----------
        +AESG N      LFGLSY+    G + R                  PRGNR +L T KL KTVEIELPV DTLPTSAESS+S+SS+ L+          
Subjt:  MAESGFNMPISGFLFGLSYI----GRNKR------------------PRGNRSSLQTRKLAKTVEIELPVRDTLPTSAESSRSSSSSTLQ----------

Query:  ----------------EGQRVSLEEDDVHWLHAIFQTKLAG
                        EG    +  DD+ WLHA+F  K AG
Subjt:  ----------------EGQRVSLEEDDVHWLHAIFQTKLAG

A0A5D3BAD1 Retrotrans_gag domain-containing protein5.9e-0852.33Show/hide
Query:  RPRGNRSSLQTRKLAKT-----------------VEIELPVRDTLPTSAESSRSSSSSTLQEGQRVSLEEDDVHWLHAIFQTKLAG
        RPRGNR SLQT KL KT                 VEIELPV DTLPTSAES  S+S ST        +  DDV WLHA+F+ K AG
Subjt:  RPRGNRSSLQTRKLAKT-----------------VEIELPVRDTLPTSAESSRSSSSSTLQEGQRVSLEEDDVHWLHAIFQTKLAG

A0A5D3BQ75 Uncharacterized protein3.8e-0747Show/hide
Query:  PRGNRSSLQTRKLAKT-----------------VEIELPVRDTLPTSAESSRSSSSSTLQEGQRVSLEEDDVHWLHAIFQTKLAGEIPKRKLKKCTTLER
        PRGNRSSLQT KL KT                 VEIELPV DT PTSAESS S+SSS         +  DDV WLHA+F+ K+    P     +C+ L R
Subjt:  PRGNRSSLQTRKLAKT-----------------VEIELPVRDTLPTSAESSRSSSSSTLQEGQRVSLEEDDVHWLHAIFQTKLAGEIPKRKLKKCTTLER

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGAATCTGGGTTCAACATGCCAATCTCTGGTTTTTTATTCGGTTTGAGCTACATAGGAAGAAATAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAA
ACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCGTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTACAGGAGGGTCAACGGGTAT
CGTTAGAGGAGGATGATGTTCATTGGCTTCACGCCATCTTTCAGACTAAGCTAGCAGGTGAAATCCCTAAGCGGAAGCTGAAGAAGTGTACAACACTCGAGCGGAAGCGA
TTTGGATCGAAAGCACTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGAATCTGGGTTCAACATGCCAATCTCTGGTTTTTTATTCGGTTTGAGCTACATAGGAAGAAATAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAA
ACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCGTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTACAGGAGGGTCAACGGGTAT
CGTTAGAGGAGGATGATGTTCATTGGCTTCACGCCATCTTTCAGACTAAGCTAGCAGGTGAAATCCCTAAGCGGAAGCTGAAGAAGTGTACAACACTCGAGCGGAAGCGA
TTTGGATCGAAAGCACTTTAA
Protein sequenceShow/hide protein sequence
MAESGFNMPISGFLFGLSYIGRNKRPRGNRSSLQTRKLAKTVEIELPVRDTLPTSAESSRSSSSSTLQEGQRVSLEEDDVHWLHAIFQTKLAGEIPKRKLKKCTTLERKR
FGSKAL