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Spg004886 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004886
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold9:21339728..21341498
RNA-Seq ExpressionSpg004886
SyntenySpg004886
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]5.4e-1250Show/hide
Query:  QVESEALFGMVRKLIQFPTT-----PRGNGSGLQTRELAKT-----------------VEIELPVPNTLPTSAESSRSSSS----------------YFP
        QVESEA  G V KLIQ+PTT     PRGN   LQTREL KT                 VEIELPVP+TLPTS ES  S+SS                YF 
Subjt:  QVESEALFGMVRKLIQFPTT-----PRGNGSGLQTRELAKT-----------------VEIELPVPNTLPTSAESSRSSSS----------------YFP

Query:  NRVMSGRHLVYV
        N+VMSG HL+YV
Subjt:  NRVMSGRHLVYV

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]4.6e-1142.98Show/hide
Query:  QVESEALFGMVRKLIQFPTT-------------------------------PRGNGSGLQTRELAKTVEIELPVPNTLPTSAESSRSSSS----------
        QV+SEA+F MVRKLIQ+PTT                               PRGN   LQ  +L KTVEIELP+P+TLPTS+ESS+S+SS          
Subjt:  QVESEALFGMVRKLIQFPTT-------------------------------PRGNGSGLQTRELAKTVEIELPVPNTLPTSAESSRSSSS----------

Query:  ------YFPNRVMSGRHLVYV
              YF  +VMS  HL+YV
Subjt:  ------YFPNRVMSGRHLVYV

KAA0064296.1 putative DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.0e-1058.14Show/hide
Query:  PRGNGSGLQTRELAKT-----------------VEIELPVPNTLPTSAESSRSSSSYFPNRVMSGRHLVYVERFNVLGGSTGIVRG
        PRGN   LQT EL KT                 VEIEL VP+TLPTSAES  S+SSYF N+VMSG HLV    FNV  GSTGIVRG
Subjt:  PRGNGSGLQTRELAKT-----------------VEIELPVPNTLPTSAESSRSSSSYFPNRVMSGRHLVYVERFNVLGGSTGIVRG

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]8.1e-1660Show/hide
Query:  QVESEALFGMVRKLIQFPTT-----PRGNGSGLQTRELAKTVEIELPVPNTLPTSAESSRSSSS----------------YFPNRVMSGRHLVYV
        QVESEALFGMVRKLIQ+PTT     PRGN    QT +L KTVEIELPVP+TLPTSAESS S+SS                Y  N+VMSG H +YV
Subjt:  QVESEALFGMVRKLIQFPTT-----PRGNGSGLQTRELAKTVEIELPVPNTLPTSAESSRSSSS----------------YFPNRVMSGRHLVYV

TYK01989.1 reverse transcriptase [Cucumis melo var. makuwa]5.4e-1250Show/hide
Query:  QVESEALFGMVRKLIQFPTT-----PRGNGSGLQTRELAKT-----------------VEIELPVPNTLPTSAESSRSSSS----------------YFP
        QVESEA  G V KLIQ+PTT     PRGN   LQTREL KT                 VEIELPVP+TLPTS ES  S+SS                YF 
Subjt:  QVESEALFGMVRKLIQFPTT-----PRGNGSGLQTRELAKT-----------------VEIELPVPNTLPTSAESSRSSSS----------------YFP

Query:  NRVMSGRHLVYV
        N+VMSG HL+YV
Subjt:  NRVMSGRHLVYV

TrEMBL top hitse value%identityAlignment
A0A5A7T223 Reverse transcriptase2.6e-1250Show/hide
Query:  QVESEALFGMVRKLIQFPTT-----PRGNGSGLQTRELAKT-----------------VEIELPVPNTLPTSAESSRSSSS----------------YFP
        QVESEA  G V KLIQ+PTT     PRGN   LQTREL KT                 VEIELPVP+TLPTS ES  S+SS                YF 
Subjt:  QVESEALFGMVRKLIQFPTT-----PRGNGSGLQTRELAKT-----------------VEIELPVPNTLPTSAESSRSSSS----------------YFP

Query:  NRVMSGRHLVYV
        N+VMSG HL+YV
Subjt:  NRVMSGRHLVYV

A0A5A7V2F2 Uncharacterized protein2.2e-1142.98Show/hide
Query:  QVESEALFGMVRKLIQFPTT-------------------------------PRGNGSGLQTRELAKTVEIELPVPNTLPTSAESSRSSSS----------
        QV+SEA+F MVRKLIQ+PTT                               PRGN   LQ  +L KTVEIELP+P+TLPTS+ESS+S+SS          
Subjt:  QVESEALFGMVRKLIQFPTT-------------------------------PRGNGSGLQTRELAKTVEIELPVPNTLPTSAESSRSSSS----------

Query:  ------YFPNRVMSGRHLVYV
              YF  +VMS  HL+YV
Subjt:  ------YFPNRVMSGRHLVYV

A0A5A7VD33 Putative DNA/RNA polymerases superfamily protein4.9e-1158.14Show/hide
Query:  PRGNGSGLQTRELAKT-----------------VEIELPVPNTLPTSAESSRSSSSYFPNRVMSGRHLVYVERFNVLGGSTGIVRG
        PRGN   LQT EL KT                 VEIEL VP+TLPTSAES  S+SSYF N+VMSG HLV    FNV  GSTGIVRG
Subjt:  PRGNGSGLQTRELAKT-----------------VEIELPVPNTLPTSAESSRSSSSYFPNRVMSGRHLVYVERFNVLGGSTGIVRG

A0A5D3BET3 Uncharacterized protein3.9e-1660Show/hide
Query:  QVESEALFGMVRKLIQFPTT-----PRGNGSGLQTRELAKTVEIELPVPNTLPTSAESSRSSSS----------------YFPNRVMSGRHLVYV
        QVESEALFGMVRKLIQ+PTT     PRGN    QT +L KTVEIELPVP+TLPTSAESS S+SS                Y  N+VMSG H +YV
Subjt:  QVESEALFGMVRKLIQFPTT-----PRGNGSGLQTRELAKTVEIELPVPNTLPTSAESSRSSSS----------------YFPNRVMSGRHLVYV

A0A5D3BV68 Reverse transcriptase2.6e-1250Show/hide
Query:  QVESEALFGMVRKLIQFPTT-----PRGNGSGLQTRELAKT-----------------VEIELPVPNTLPTSAESSRSSSS----------------YFP
        QVESEA  G V KLIQ+PTT     PRGN   LQTREL KT                 VEIELPVP+TLPTS ES  S+SS                YF 
Subjt:  QVESEALFGMVRKLIQFPTT-----PRGNGSGLQTRELAKT-----------------VEIELPVPNTLPTSAESSRSSSS----------------YFP

Query:  NRVMSGRHLVYV
        N+VMSG HL+YV
Subjt:  NRVMSGRHLVYV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAAGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCCGAAGC
TCTATTTGGTATGGTTAGAAAGCTTATTCAATTTCCTACAACGCCAAGAGGAAATGGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCGG
TGCCTAATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTATTTTCCAAACCGAGTTATGTCAGGGCGGCACCTCGTGTATGTTGAAAGGTTCAACGTT
CTAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCATGCCATCTTCCGGACTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGGAATGGAAAACAGAGCACAAGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGGTTTTTCGAGCATTCTGGGGTGTACAAGTTGAATCCGAAGC
TCTATTTGGTATGGTTAGAAAGCTTATTCAATTTCCTACAACGCCAAGAGGAAATGGGTCGGGTCTACAAACCAGGGAACTAGCTAAGACTGTAGAGATCGAGCTCCCGG
TGCCTAATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTATTTTCCAAACCGAGTTATGTCAGGGCGGCACCTCGTGTATGTTGAAAGGTTCAACGTT
CTAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCATGCCATCTTCCGGACTAA
Protein sequenceShow/hide protein sequence
MVFGMENRAQDFRAKQEDLWFSLVFRAFWGVQVESEALFGMVRKLIQFPTTPRGNGSGLQTRELAKTVEIELPVPNTLPTSAESSRSSSSYFPNRVMSGRHLVYVERFNV
LGGSTGIVRGGRCSLASCHLPD