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Spg004887 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004887
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold9:21673421..21674907
RNA-Seq ExpressionSpg004887
SyntenySpg004887
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037514.1 reverse transcriptase [Cucumis melo var. makuwa]8.6e-1963.04Show/hide
Query:  QVESEALFGMVGKLIQFTTTVMKLSPRGNRSSLQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        QVESEA  G VGKLIQ+ TT MK+ PRGNR SLQTRELDKT                 VEIELPVPDTLPTS ES  S+S+TW+ELY ESV+
Subjt:  QVESEALFGMVGKLIQFTTTVMKLSPRGNRSSLQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]9.2e-1358.9Show/hide
Query:  ESEALFGMVGKLIQFTTTVMKLSPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        ES       G  + F +  + + PRGNR +L T +LDKTVEIELPVPDTLPTSAESS+S+S+TW+ELY ESV+
Subjt:  ESEALFGMVGKLIQFTTTVMKLSPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]5.2e-1652.48Show/hide
Query:  QVESEALFGMVGKLIQFTTTVMKL--------------------------SPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESV
        QV+SEA+F MV KLIQ+ TT MK+                           PRGNR SLQ  +L+KTVEIELP+PDTLPTS+ESS+S+S+TW+ELY ESV
Subjt:  QVESEALFGMVGKLIQFTTTVMKL--------------------------SPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESV

Query:  Y
        +
Subjt:  Y

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]1.1e-2177.33Show/hide
Query:  QVESEALFGMVGKLIQFTTTVMKLSPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        QVESEALFGMV KLIQ+ TT M + PRGNR S QT +LDKTVEIELPVPDTLPTSAESS S+S+TW+ELY ESV+
Subjt:  QVESEALFGMVGKLIQFTTTVMKLSPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY

TYK01989.1 reverse transcriptase [Cucumis melo var. makuwa]8.6e-1963.04Show/hide
Query:  QVESEALFGMVGKLIQFTTTVMKLSPRGNRSSLQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        QVESEA  G VGKLIQ+ TT MK+ PRGNR SLQTRELDKT                 VEIELPVPDTLPTS ES  S+S+TW+ELY ESV+
Subjt:  QVESEALFGMVGKLIQFTTTVMKLSPRGNRSSLQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY

TrEMBL top hitse value%identityAlignment
A0A5A7T223 Reverse transcriptase4.1e-1963.04Show/hide
Query:  QVESEALFGMVGKLIQFTTTVMKLSPRGNRSSLQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        QVESEA  G VGKLIQ+ TT MK+ PRGNR SLQTRELDKT                 VEIELPVPDTLPTS ES  S+S+TW+ELY ESV+
Subjt:  QVESEALFGMVGKLIQFTTTVMKLSPRGNRSSLQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY

A0A5A7UAH6 CCHC-type domain-containing protein4.4e-1358.9Show/hide
Query:  ESEALFGMVGKLIQFTTTVMKLSPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        ES       G  + F +  + + PRGNR +L T +LDKTVEIELPVPDTLPTSAESS+S+S+TW+ELY ESV+
Subjt:  ESEALFGMVGKLIQFTTTVMKLSPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY

A0A5A7V2F2 Uncharacterized protein2.5e-1652.48Show/hide
Query:  QVESEALFGMVGKLIQFTTTVMKL--------------------------SPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESV
        QV+SEA+F MV KLIQ+ TT MK+                           PRGNR SLQ  +L+KTVEIELP+PDTLPTS+ESS+S+S+TW+ELY ESV
Subjt:  QVESEALFGMVGKLIQFTTTVMKL--------------------------SPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESV

Query:  Y
        +
Subjt:  Y

A0A5D3BET3 Uncharacterized protein5.2e-2277.33Show/hide
Query:  QVESEALFGMVGKLIQFTTTVMKLSPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        QVESEALFGMV KLIQ+ TT M + PRGNR S QT +LDKTVEIELPVPDTLPTSAESS S+S+TW+ELY ESV+
Subjt:  QVESEALFGMVGKLIQFTTTVMKLSPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVY

A0A5D3BV68 Reverse transcriptase4.1e-1963.04Show/hide
Query:  QVESEALFGMVGKLIQFTTTVMKLSPRGNRSSLQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY
        QVESEA  G VGKLIQ+ TT MK+ PRGNR SLQTRELDKT                 VEIELPVPDTLPTS ES  S+S+TW+ELY ESV+
Subjt:  QVESEALFGMVGKLIQFTTTVMKLSPRGNRSSLQTRELDKT-----------------VEIELPVPDTLPTSAESSRSSSNTWVELYIESVY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGGGAATTCTGGGGTGTACAAGTCGAATCTGAAGC
TCTATTTGGTATGGTTGGAAAGCTTATTCAATTTACTACAACTGTCATGAAGCTTTCGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGATAAGACAGTAG
AGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTT
TTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTTTGAAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGGGAATTCTGGGGTGTACAAGTCGAATCTGAAGC
TCTATTTGGTATGGTTGGAAAGCTTATTCAATTTACTACAACTGTCATGAAGCTTTCGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGATAAGACAGTAG
AGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAATACGTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTT
TTGTAA
Protein sequenceShow/hide protein sequence
MVFEMENRAQDFRANQEDLWCSLVFWEFWGVQVESEALFGMVGKLIQFTTTVMKLSPRGNRSSLQTRELDKTVEIELPVPDTLPTSAESSRSSSNTWVELYIESVYYVNV
L