CuGenDBv2

Gene ID	Spg004900
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	40S ribosomal protein S13
Genome location	scaffold9:21585380..21587543
RNA-Seq Expression	Spg004900
Synteny	Spg004900
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005730 - nucleolus (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000589 - Ribosomal protein S15 IPR009068 - S15/NS1, RNA-binding IPR012606 - Ribosomal protein S13/S15, N-terminal IPR023029 - Ribosomal protein S15P

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0039994.1 40S ribosomal protein S13 [Cucumis melo var. makuwa]

2.9e-46

89.81

Show/hide

Query:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT
        VAENICKFAKKGLTPSQIGVIL DSHGIA +KSVTG+KIL ILKAHGLAPEI +DLYHLIKK VSIRKHLERN KDKDSKF+LILVESRIHRLA+YYKKT
Subjt:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT

Query:  KKLPPVWK
        KKLPPVWK
Subjt:  KKLPPVWK

RZC29902.1 40S ribosomal protein S13 [Glycine soja]

1.7e-46

91.67

Show/hide

Query:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT
        V ENICKFAKKGLTPS IGVILHDSHGIA +KSVTGSKIL ILKAH LAPEISKDLYHLIKKVV IRKHLERN KDKDSKFKLILVESRIHRLA YYKKT
Subjt:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT

Query:  KKLPPVWK
        KKLPPVWK
Subjt:  KKLPPVWK

XP_006574249.1 40S ribosomal protein S13-like, partial [Glycine max]

1.7e-46

91.67

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Query:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT
        V ENICKFAKKGLTPS IGVILHDSHGIA +KSVTGSKIL ILKAH LAPEISKDLYHLIKKVV IRKHLERN KDKDSKFKLILVESRIHRLA YYKKT
Subjt:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT

Query:  KKLPPVWK
        KKLPPVWK
Subjt:  KKLPPVWK

XP_022143980.1 40S ribosomal protein S13-like [Momordica charantia]

1.3e-46

90.74

Show/hide

Query:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT
        VAENICKFAKKGLTPSQIGVIL DSHGIA +KSVTGSKIL ILKAHGLAPEI +DLYHLIKK VSIRKHLERN KDKDSKF+LILVESRIHRLA+YYKKT
Subjt:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT

Query:  KKLPPVWK
        KKLPPVWK
Subjt:  KKLPPVWK

XP_038906798.1 40S ribosomal protein S13 [Benincasa hispida]

1.3e-46

90.74

Show/hide

Query:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT
        VAENICKFAKKGLTPSQIGVIL DSHGIA +KSVTGSKIL ILKAHGLAPEI +DLYHLIKK VSIRKHLERN KDKDSKF+LILVESRIHRLA+YYKKT
Subjt:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT

Query:  KKLPPVWK
        KKLPPVWK
Subjt:  KKLPPVWK

TrEMBL top hits

e value

%identity

Alignment

A0A445M2R8 40S ribosomal protein S13

8.2e-47

91.67

Show/hide

Query:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT
        V ENICKFAKKGLTPS IGVILHDSHGIA +KSVTGSKIL ILKAH LAPEISKDLYHLIKKVV IRKHLERN KDKDSKFKLILVESRIHRLA YYKKT
Subjt:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT

Query:  KKLPPVWK
        KKLPPVWK
Subjt:  KKLPPVWK

A0A5A7T967 40S ribosomal protein S13

1.4e-46

89.81

Show/hide

Query:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT
        VAENICKFAKKGLTPSQIGVIL DSHGIA +KSVTG+KIL ILKAHGLAPEI +DLYHLIKK VSIRKHLERN KDKDSKF+LILVESRIHRLA+YYKKT
Subjt:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT

Query:  KKLPPVWK
        KKLPPVWK
Subjt:  KKLPPVWK

A0A6J1CQC4 40S ribosomal protein S13-like

6.3e-47

90.74

Show/hide

Query:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT
        VAENICKFAKKGLTPSQIGVIL DSHGIA +KSVTGSKIL ILKAHGLAPEI +DLYHLIKK VSIRKHLERN KDKDSKF+LILVESRIHRLA+YYKKT
Subjt:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT

Query:  KKLPPVWK
        KKLPPVWK
Subjt:  KKLPPVWK

A0A6J1HJL3 40S ribosomal protein S13-like

6.3e-47

90.74

Show/hide

Query:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT
        VAENICKFAKKGLTPSQIGVIL DSHGIA +KSVTGSKIL ILKAHGLAPEI +DLYHLIKK VSIRKHLERN KDKDSKF+LILVESRIHRLA+YYKKT
Subjt:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT

Query:  KKLPPVWK
        KKLPPVWK
Subjt:  KKLPPVWK

A0A6J1KV63 40S ribosomal protein S13-like

6.3e-47

90.74

Show/hide

Query:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT
        VAENICKFAKKGLTPSQIGVIL DSHGIA +KSVTGSKIL ILKAHGLAPEI +DLYHLIKK VSIRKHLERN KDKDSKF+LILVESRIHRLA+YYKKT
Subjt:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT

Query:  KKLPPVWK
        KKLPPVWK
Subjt:  KKLPPVWK

SwissProt top hits

e value

%identity

Alignment

P46298 40S ribosomal protein S13

4.7e-47

87.96

Show/hide

Query:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT
        V E ICKFAKKGLTPSQIGVIL DSHGIA +KSVTGSKIL ILKAHGLAPEI +DLYHLIKK VSIRKHLER  KDKDSKF+LILVESRIHRLA+YYKKT
Subjt:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT

Query:  KKLPPVWK
        KKLPPVWK
Subjt:  KKLPPVWK

P59223 40S ribosomal protein S13-1

2.7e-47

87.04

Show/hide

Query:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT
        V E+ICKFAKKGLTPSQIGVIL DSHGI  +KSVTGSKIL ILKAHGLAPEI +DLYHLIKK V+IRKHLERN KDKDSKF+LILVESRIHRLA+YYKKT
Subjt:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT

Query:  KKLPPVWK
        KKLPPVWK
Subjt:  KKLPPVWK

P59224 40S ribosomal protein S13-2

2.7e-47

87.04

Show/hide

Query:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT
        V E+ICKFAKKGLTPSQIGVIL DSHGI  +KSVTGSKIL ILKAHGLAPEI +DLYHLIKK V+IRKHLERN KDKDSKF+LILVESRIHRLA+YYKKT
Subjt:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT

Query:  KKLPPVWK
        KKLPPVWK
Subjt:  KKLPPVWK

P62302 40S ribosomal protein S13

2.5e-48

88.89

Show/hide

Query:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT
        V ENICKFAKKGLTPSQIGVIL DSHGIA + SVTGSKIL ILKAHGLAPEI +DLYHLIKK VSIRKHLERN KDKDSKF+LILVESRIHRLA+YYKKT
Subjt:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT

Query:  KKLPPVWK
        KKLPPVWK
Subjt:  KKLPPVWK

Q69UI2 40S ribosomal protein S13-1

8.5e-41

78.7

Show/hide

Query:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT
        V E I K AKKG  PSQIGV+L D HGI  +KSVTGSKIL ILKAHGLAPEI +DLY LIKK V+IRKHLERN KDKDSKF+LILVESRIHRLA+YYK+T
Subjt:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT

Query:  KKLPPVWK
        KKLPP WK
Subjt:  KKLPPVWK

Arabidopsis top hits

e value

%identity

Alignment

AT3G60770.1 Ribosomal protein S13/S15

1.9e-48

87.04

Show/hide

Query:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT
        V E+ICKFAKKGLTPSQIGVIL DSHGI  +KSVTGSKIL ILKAHGLAPEI +DLYHLIKK V+IRKHLERN KDKDSKF+LILVESRIHRLA+YYKKT
Subjt:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT

Query:  KKLPPVWK
        KKLPPVWK
Subjt:  KKLPPVWK

AT4G00100.1 ribosomal protein S13A

1.9e-48

87.04

Show/hide

Query:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT
        V E+ICKFAKKGLTPSQIGVIL DSHGI  +KSVTGSKIL ILKAHGLAPEI +DLYHLIKK V+IRKHLERN KDKDSKF+LILVESRIHRLA+YYKKT
Subjt:  VAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKHLERNMKDKDSKFKLILVESRIHRLAQYYKKT

Query:  KKLPPVWK
        KKLPPVWK
Subjt:  KKLPPVWK

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAAGAAGAAGATGGAAGGAATTTAAGGGTCAGAGCTTTCAGAAAAACCACCGACGCTGAGACAACACAGATCCAATCCAGCCTCATTATGGTAGCCAATGATTTGCG
TATAGGGTGGTGGGTTGCCGAGAACATTTGCAAATTTGCTAAGAAGGGTTTGACACCATCTCAAATTGGTGTTATTCTCCATGATTCTCATGGGATTGCTCATATGAAAA
GTGTAACTGGGAGCAAGATCTTGCATATATTGAAGGCTCATGGGCTAGCTCCTGAAATCTCGAAGGATCTTTACCATCTCATCAAGAAAGTTGTTTCAATCAGAAAGCAT
TTGGAGAGAAACATGAAAGACAAAGATTCCAAGTTCAAGTTGATTTTGGTGGAGAGCAGGATCCATCGCCTAGCCCAGTATTACAAGAAGACAAAGAAGCTTCCCCCTGT
TTGGAAGTAG

mRNA sequence

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Protein sequence

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MEEEDGRNLRVRAFRKTTDAETTQIQSSLIMVANDLRIGWWVAENICKFAKKGLTPSQIGVILHDSHGIAHMKSVTGSKILHILKAHGLAPEISKDLYHLIKKVVSIRKH
LERNMKDKDSKFKLILVESRIHRLAQYYKKTKKLPPVWK

Spg004900 (gene) of Sponge gourd (cylindrica) v1 genome