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Spg004922 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004922
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold9:20314025..20317279
RNA-Seq ExpressionSpg004922
SyntenySpg004922
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058280.1 uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa]1.0e-0546.77Show/hide
Query:  WVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKPAGGPGGG
        W+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPGGG
Subjt:  WVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKPAGGPGGG

KAA0061222.1 transposase [Cucumis melo var. makuwa]7.7e-0643.84Show/hide
Query:  DGIMQYCRMVEIGYSCILVYIAYLWT--------------------FNMKTTYTQEEIDEVRIEWAGFVGTFV
        + ++ YC MVEIGY CIL YI  L T                    FN K+ Y QEEIDE+R +WA FV  FV
Subjt:  DGIMQYCRMVEIGYSCILVYIAYLWT--------------------FNMKTTYTQEEIDEVRIEWAGFVGTFV

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]7.7e-0641.67Show/hide
Query:  WVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKPAGGPGGGDGIMQYCRMV
        W+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGG   ++ C  V
Subjt:  WVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKPAGGPGGGDGIMQYCRMV

TYK06270.1 transposase [Cucumis melo var. makuwa]7.7e-0643.84Show/hide
Query:  DGIMQYCRMVEIGYSCILVYIAYLWT--------------------FNMKTTYTQEEIDEVRIEWAGFVGTFV
        + ++ YC MVEIGY CIL YI  L T                    FN K+ Y QEEIDE+R +WA FV  FV
Subjt:  DGIMQYCRMVEIGYSCILVYIAYLWT--------------------FNMKTTYTQEEIDEVRIEWAGFVGTFV

TYK26572.1 putative Retrotransposon protein [Cucumis melo var. makuwa]7.7e-0641.67Show/hide
Query:  WVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKPAGGPGGGDGIMQYCRMV
        W+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGG   ++ C  V
Subjt:  WVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKPAGGPGGGDGIMQYCRMV

TrEMBL top hitse value%identityAlignment
A0A5A7UT17 CCHC-type domain-containing protein4.9e-0646.77Show/hide
Query:  WVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKPAGGPGGG
        W+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPGGG
Subjt:  WVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKPAGGPGGG

A0A5A7UZ87 Transposase3.7e-0643.84Show/hide
Query:  DGIMQYCRMVEIGYSCILVYIAYLWT--------------------FNMKTTYTQEEIDEVRIEWAGFVGTFV
        + ++ YC MVEIGY CIL YI  L T                    FN K+ Y QEEIDE+R +WA FV  FV
Subjt:  DGIMQYCRMVEIGYSCILVYIAYLWT--------------------FNMKTTYTQEEIDEVRIEWAGFVGTFV

A0A5A7V9N3 Reverse transcriptase3.7e-0641.67Show/hide
Query:  WVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKPAGGPGGGDGIMQYCRMV
        W+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGG   ++ C  V
Subjt:  WVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKPAGGPGGGDGIMQYCRMV

A0A5D3C4L5 Transposase3.7e-0643.84Show/hide
Query:  DGIMQYCRMVEIGYSCILVYIAYLWT--------------------FNMKTTYTQEEIDEVRIEWAGFVGTFV
        + ++ YC MVEIGY CIL YI  L T                    FN K+ Y QEEIDE+R +WA FV  FV
Subjt:  DGIMQYCRMVEIGYSCILVYIAYLWT--------------------FNMKTTYTQEEIDEVRIEWAGFVGTFV

A0A5D3DSY7 Putative Retrotransposon protein3.7e-0641.67Show/hide
Query:  WVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKPAGGPGGGDGIMQYCRMV
        W+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPGGG   ++ C  V
Subjt:  WVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKPAGGPGGGDGIMQYCRMV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGC
CATCTTTCGGGCTAAGCCAGCAGGTGGTCCGGGAGGGGGTGATGGCATCATGCAGTATTGCAGGATGGTTGAAATAGGGTACTCATGTATACTAGTGTACATTGCGTATC
TTTGGACTTTTAACATGAAAACAACATATACGCAAGAAGAAATTGACGAGGTTCGGATAGAATGGGCAGGGTTCGTGGGAACATTTGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGC
CATCTTTCGGGCTAAGCCAGCAGGTGGTCCGGGAGGGGGTGATGGCATCATGCAGTATTGCAGGATGGTTGAAATAGGGTACTCATGTATACTAGTGTACATTGCGTATC
TTTGGACTTTTAACATGAAAACAACATATACGCAAGAAGAAATTGACGAGGTTCGGATAGAATGGGCAGGGTTCGTGGGAACATTTGTGTAG
Protein sequenceShow/hide protein sequence
MWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKPAGGPGGGDGIMQYCRMVEIGYSCILVYIAYLWTFNMKTTYTQEEIDEVRIEWAGFVGTFV