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Spg004941 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004941
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold9:21251424..21254157
RNA-Seq ExpressionSpg004941
SyntenySpg004941
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037787.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.5e-0858.33Show/hide
Query:  VYKLNQKLHLVEIELPVPDTLPTSVESSRSSSSSA-IQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVTVD
        V+KLNQKL+LVEIELPV DTLPTS ESS S+S SA I +G       DDVCWL  +   K  G  GG   VD
Subjt:  VYKLNQKLHLVEIELPVPDTLPTSVESSRSSSSSA-IQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVTVD

KAA0060199.1 uncharacterized protein E6C27_scaffold386G00120 [Cucumis melo var. makuwa]3.7e-0756.92Show/hide
Query:  LVEIELPVPDTLPTSVESSRSSS-SSAIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVTVDMS
        +VEIELPVPDTLPTS ES  S+S S+ I +G       DDVCWLHA+   K AG  GGGVT +++
Subjt:  LVEIELPVPDTLPTSVESSRSSS-SSAIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVTVDMS

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-0652.17Show/hide
Query:  LVEIELPVPDTLPTSVESSRSSSSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAGSLGGGV
        +VEIELPVPDTLPTS ESS S+SS+ ++   +            + EDDVCWLHA+   K AG  GGGV
Subjt:  LVEIELPVPDTLPTSVESSRSSSSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAGSLGGGV

TYK00845.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa]3.2e-0660.66Show/hide
Query:  LVEIELPVPDTLPTSVESSRSSSSSA-IQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVT
        + EIELPVPDTL TS ESS S+S SA I +G       DDVCWLHAI   K+ G  GGGVT
Subjt:  LVEIELPVPDTLPTSVESSRSSSSSA-IQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-0652.17Show/hide
Query:  LVEIELPVPDTLPTSVESSRSSSSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAGSLGGGV
        +VEIELPVPDTLPTS ESS S+SS+ ++   +            + EDDVCWLHA+   K AG  GGGV
Subjt:  LVEIELPVPDTLPTSVESSRSSSSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAGSLGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7TKJ1 Retrotransposon protein1.5e-0660.66Show/hide
Query:  LVEIELPVPDTLPTSVESSRSSSSS-AIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVT
        LV IELPVPDTLPTS ESSRS+S S  I +G       DDVCWLHA+   K  G  GG VT
Subjt:  LVEIELPVPDTLPTSVESSRSSSSS-AIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVT

A0A5A7VMG9 Reverse transcriptase5.3e-0752.17Show/hide
Query:  LVEIELPVPDTLPTSVESSRSSSSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAGSLGGGV
        +VEIELPVPDTLPTS ESS S+SS+ ++   +            + EDDVCWLHA+   K AG  GGGV
Subjt:  LVEIELPVPDTLPTSVESSRSSSSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAGSLGGGV

A0A5D3BAD1 Retrotrans_gag domain-containing protein1.8e-0756.92Show/hide
Query:  LVEIELPVPDTLPTSVESSRSSS-SSAIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVTVDMS
        +VEIELPVPDTLPTS ES  S+S S+ I +G       DDVCWLHA+   K AG  GGGVT +++
Subjt:  LVEIELPVPDTLPTSVESSRSSS-SSAIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVTVDMS

A0A5D3DVK1 Ty3-gypsy retrotransposon protein7.3e-0958.33Show/hide
Query:  VYKLNQKLHLVEIELPVPDTLPTSVESSRSSSSSA-IQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVTVD
        V+KLNQKL+LVEIELPV DTLPTS ESS S+S SA I +G       DDVCWL  +   K  G  GG   VD
Subjt:  VYKLNQKLHLVEIELPVPDTLPTSVESSRSSSSSA-IQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVTVD

A0A5D3DX39 Reverse transcriptase5.3e-0752.17Show/hide
Query:  LVEIELPVPDTLPTSVESSRSSSSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAGSLGGGV
        +VEIELPVPDTLPTS ESS S+SS+ ++   +            + EDDVCWLHA+   K AG  GGGV
Subjt:  LVEIELPVPDTLPTSVESSRSSSSSAIQQGQQV----------SLEEDDVCWLHAISLTKLAGSLGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
CATTCTGGGGTGTACAAGTTGAATCAGAAGCTCCATTTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCAGATCAAGCTCCAGTTC
AGCGATTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGGTAGTTTGGGAGGGGGTGTGACAGTTG
ACATGTCCGTAAAAGGACTTAAGCTACGATGTCTAGCCTTAGACATCATAATCAGAATTGATGAACCGGAGCGTGAAATCACTGAACCGGACCAAACCGGATATATCTCG
CTTCACGTTCTCATTAGAATGGTCTCTCTGGGCTGGAAATGCATCAGCATCGAGAGGCAGAAGAATAGCGTCTTGACGCTGACTCGTCTAGGTACCACTCTGCTCTTCAG
CCAGCTGTGTTCTTCATCTTTTCTCGATCAATTGAAGGCCTAA
mRNA sequenceShow/hide mRNA sequence
CATTCTGGGGTGTACAAGTTGAATCAGAAGCTCCATTTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGTTGAAAGTTCCAGATCAAGCTCCAGTTC
AGCGATTCAGCAGGGTCAACAGGTATCGTTAGAGGAGGACGATGTCTGTTGGCTTCACGCCATCTCCCTGACTAAGCTAGCAGGTAGTTTGGGAGGGGGTGTGACAGTTG
ACATGTCCGTAAAAGGACTTAAGCTACGATGTCTAGCCTTAGACATCATAATCAGAATTGATGAACCGGAGCGTGAAATCACTGAACCGGACCAAACCGGATATATCTCG
CTTCACGTTCTCATTAGAATGGTCTCTCTGGGCTGGAAATGCATCAGCATCGAGAGGCAGAAGAATAGCGTCTTGACGCTGACTCGTCTAGGTACCACTCTGCTCTTCAG
CCAGCTGTGTTCTTCATCTTTTCTCGATCAATTGAAGGCCTAA
Protein sequenceShow/hide protein sequence
HSGVYKLNQKLHLVEIELPVPDTLPTSVESSRSSSSSAIQQGQQVSLEEDDVCWLHAISLTKLAGSLGGGVTVDMSVKGLKLRCLALDIIIRIDEPEREITEPDQTGYIS
LHVLIRMVSLGWKCISIERQKNSVLTLTRLGTTLLFSQLCSSSFLDQLKA