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Spg004951 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004951
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold9:20308137..20309458
RNA-Seq ExpressionSpg004951
SyntenySpg004951
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]7.7e-2255.45Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS ++ +TW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGPG

Query:  GGVTITMYEN
          VT T Y++
Subjt:  GGVTITMYEN

KAA0062409.1 reverse transcriptase [Cucumis melo var. makuwa]2.5e-1756.82Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGPGGGVT
        VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FR+K  GGPGGGVT
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGPGGGVT

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]3.4e-2258.88Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+              + EDDV WLHA+FR+K A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLA

Query:  GGPGGGV
        GGPGGGV
Subjt:  GGPGGGV

TYK08952.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.7e-1951.69Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   ++SSTW+ELY+ESVH+  + +             EG    +  DDV W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRW

Query:  LHAIFRSKLAGGPGGGVT
        LHA+FR+K AGGP GGVT
Subjt:  LHAIFRSKLAGGPGGGVT

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]3.4e-2258.88Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+              + EDDV WLHA+FR+K A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLA

Query:  GGPGGGV
        GGPGGGV
Subjt:  GGPGGGV

TrEMBL top hitse value%identityAlignment
A0A5A7V638 Uncharacterized protein3.7e-2255.45Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGPG
        MTEILS RLYGTVCTQV+IELP+PDTLPTSAESS ++ +TW+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FR K A  PG
Subjt:  MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGPG

Query:  GGVTITMYEN
          VT T Y++
Subjt:  GGVTITMYEN

A0A5A7V9N3 Reverse transcriptase1.2e-1756.82Show/hide
Query:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGPGGGVT
        VEIELPVPDTLPTSAESS ++SSTW+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FR+K  GGPGGGVT
Subjt:  VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGPGGGVT

A0A5A7VMG9 Reverse transcriptase1.7e-2258.88Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+              + EDDV WLHA+FR+K A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLA

Query:  GGPGGGV
        GGPGGGV
Subjt:  GGPGGGV

A0A5D3CCC7 DNA/RNA polymerases superfamily protein1.3e-1951.69Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRW
        MTEILS RL GTVCTQ                 VEIELPVPDTLPTSAE   ++SSTW+ELY+ESVH+  + +             EG    +  DDV W
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQ----------EGQRVSLEEDDVRW

Query:  LHAIFRSKLAGGPGGGVT
        LHA+FR+K AGGP GGVT
Subjt:  LHAIFRSKLAGGPGGGVT

A0A5D3DX39 Reverse transcriptase1.7e-2258.88Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLA
        MTEILSPRLYGTVCTQ                 VEIELPVPDTLPTSAESS ++SSTW+ELY+E VH+              + EDDV WLHA+FR+K A
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLA

Query:  GGPGGGV
        GGPGGGV
Subjt:  GGPGGGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGCTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGTCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAATCACGATGTACGAAAATTGTTTTATCCTCTCCAAAAATAGTGTCACTCAATTTGAT
AGGAATTGTGTCATCCCCTCCCATGGAAAGAGCGACATATCGATTCAGCAACTTGATGGTAACGTGGATATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAG
CTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGCTAGAGGAGGACGATGTCCGTTGGC
TTCACGCCATCTTTCGGTCTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAATCACGATGTACGAAAATTGTTTTATCCTCTCCAAAAATAGTGTCACTCAATTTGAT
AGGAATTGTGTCATCCCCTCCCATGGAAAGAGCGACATATCGATTCAGCAACTTGATGGTAACGTGGATATCTGA
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRSKLAGGPGGGVTITMYENCFILSKNSVTQFD
RNCVIPSHGKSDISIQQLDGNVDI