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Spg004954 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004954
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold9:20835816..20838080
RNA-Seq ExpressionSpg004954
SyntenySpg004954
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040194.1 gag/pol protein [Cucumis melo var. makuwa]3.3e-0866.67Show/hide
Query:  LHNVDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAA
        L + D  VEIELP+PDTLPTSAESS S+SSTW+ELY ESV+    +LF KPS  RAA
Subjt:  LHNVDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAA
KAA0041121.1 hypothetical protein E6C27_scaffold128G00290 [Cucumis melo var. makuwa]4.3e-0864.41Show/hide
Query:  LHNVDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAAPR
        L + D+ VEIELPVPD LPTSAESS S+SSTW+ELY ESV+    +LF KPS VR   R
Subjt:  LHNVDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAAPR
KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]6.6e-0972.22Show/hide
Query:  VDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAA
        +D  VEIELPVPDTLPTSAESSKS+SSTW+ELY ESV+    +LF KPS VR A
Subjt:  VDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAA
TYK08801.1 hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]4.3e-1665Show/hide
Query:  GVLGGPHYIVELVNVGCIGRALHNVDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAAPR
        GV GGPHYIV LVNVGC GR LH++D  +EIEL VPDTLPTSAESS S+SSTW+E   E        LF KPS VR A R
Subjt:  GVLGGPHYIVELVNVGCIGRALHNVDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAAPR
TYK25935.1 gag/pol protein [Cucumis melo var. makuwa]3.3e-0866.67Show/hide
Query:  LHNVDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAA
        L + D  VEIELP+PDTLPTSAESS S+SSTW+ELY ESV+    +LF KPS  RAA
Subjt:  LHNVDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAA
TrEMBL top hitse value%identityAlignment
A0A5A7T9P7 Gag/pol protein1.6e-0866.67Show/hide
Query:  LHNVDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAA
        L + D  VEIELP+PDTLPTSAESS S+SSTW+ELY ESV+    +LF KPS  RAA
Subjt:  LHNVDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAA
A0A5A7THH5 Uncharacterized protein2.1e-0864.41Show/hide
Query:  LHNVDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAAPR
        L + D+ VEIELPVPD LPTSAESS S+SSTW+ELY ESV+    +LF KPS VR   R
Subjt:  LHNVDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAAPR
A0A5A7UAH6 CCHC-type domain-containing protein3.2e-0972.22Show/hide
Query:  VDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAA
        +D  VEIELPVPDTLPTSAESSKS+SSTW+ELY ESV+    +LF KPS VR A
Subjt:  VDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAA
A0A5D3CAC6 Uncharacterized protein2.1e-1665Show/hide
Query:  GVLGGPHYIVELVNVGCIGRALHNVDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAAPR
        GV GGPHYIV LVNVGC GR LH++D  +EIEL VPDTLPTSAESS S+SSTW+E   E        LF KPS VR A R
Subjt:  GVLGGPHYIVELVNVGCIGRALHNVDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAAPR
A0A5D3DR18 Gag/pol protein1.6e-0866.67Show/hide
Query:  LHNVDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAA
        L + D  VEIELP+PDTLPTSAESS S+SSTW+ELY ESV+    +LF KPS  RAA
Subjt:  LHNVDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTGCTGGGTGGGCCCCACTACATCGTAGAGCTAGTAAACGTTGGTTGTATTGGGCGTGCCCTACACAACGTTGATTTGTATGTAGAGATTGAGCTCCCGGTGCC
TGATACACTGCCAACGTCTGCTGAAAGTTCCAAATCAAGCTCCAGTACTTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTATTTTCCAAACCGA
GTTATGTCAGGGCTGCACCTCGCGAGCAAACTATGGATTTTGGTGATAAAAGTGCCCAAAATGAAGCCATTCAAGCCCAATTTCCATGCTTGGGTCAAAGGGAATCAAAA
GAGGCCAACTATGAAGAAAAAGGTCCAAAAAGAAATGTGGAGAGGCCCAAATTGAAGCCCAAATCCGTAGTTGAAAGATCTGAAAAATGCCTATACAGCGTCGCGACGCT
GTCCATTTCTTGGCCGGCAAGTCGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTGCTGGGTGGGCCCCACTACATCGTAGAGCTAGTAAACGTTGGTTGTATTGGGCGTGCCCTACACAACGTTGATTTGTATGTAGAGATTGAGCTCCCGGTGCC
TGATACACTGCCAACGTCTGCTGAAAGTTCCAAATCAAGCTCCAGTACTTGGGTGGAGTTGTATATTGAGTCTGTCTATTATGTAAATGTTTTGTTATTTTCCAAACCGA
GTTATGTCAGGGCTGCACCTCGCGAGCAAACTATGGATTTTGGTGATAAAAGTGCCCAAAATGAAGCCATTCAAGCCCAATTTCCATGCTTGGGTCAAAGGGAATCAAAA
GAGGCCAACTATGAAGAAAAAGGTCCAAAAAGAAATGTGGAGAGGCCCAAATTGAAGCCCAAATCCGTAGTTGAAAGATCTGAAAAATGCCTATACAGCGTCGCGACGCT
GTCCATTTCTTGGCCGGCAAGTCGATGA
Protein sequenceShow/hide protein sequence
MGVLGGPHYIVELVNVGCIGRALHNVDLYVEIELPVPDTLPTSAESSKSSSSTWVELYIESVYYVNVLLFSKPSYVRAAPREQTMDFGDKSAQNEAIQAQFPCLGQRESK
EANYEEKGPKRNVERPKLKPKSVVERSEKCLYSVATLSISWPASR