; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg004972 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004972
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold9:22896848..22900860
RNA-Seq ExpressionSpg004972
SyntenySpg004972
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0016787 - hydrolase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0042035.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.3e-1740.11Show/hide
Query:  KAHAKPTIAESEFNLSTPGFLFGLSYIEGIKRIFVQTRRIS---GVLWCFEHS----GVYKLNQKLYL-----------------VEIELPVPDTLPTSA
        K++      + EF +    FL  LS   G+ R   +  RIS   G    F  +     V+K NQKLYL                 VEIELPVPDTLPTSA
Subjt:  KAHAKPTIAESEFNLSTPGFLFGLSYIEGIKRIFVQTRRIS---GVLWCFEHS----GVYKLNQKLYL-----------------VEIELPVPDTLPTSA

Query:  ESSRISSSTWVELYIESVHIE-------------------GQRVSLEEDDVRWLHAIFRAKLAGGPGGAVLGFAECS
        ES   +SSTW+ELY ESVH+E                   G    +  DDV WLHA+FRAK AGGPGG V  + + S
Subjt:  ESSRISSSTWVELYIESVHIE-------------------GQRVSLEEDDVRWLHAIFRAKLAGGPGGAVLGFAECS

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]3.0e-1943.21Show/hide
Query:  IGKAHAKPTIAESEFNLSTPGFLFGLSYIEGIKRIFVQTRRISGVLWCFE--------------HSGVYKLNQKLYLVEIELPVPDTLPTSAESSRISSS
        I K +AKP IAES  N      LFGLSY+E ++    +    SG    F               H+G  KL++    VEIELPVPDTLPTSAESS+ +SS
Subjt:  IGKAHAKPTIAESEFNLSTPGFLFGLSYIEGIKRIFVQTRRISGVLWCFE--------------HSGVYKLNQKLYLVEIELPVPDTLPTSAESSRISSS

Query:  TWVELYIESVHI------------------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGAVL
        TW+ELY ESVH+                  EG    +  DD+ WLHA+F AK AG PGG V+
Subjt:  TWVELYIESVHI------------------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGAVL

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]8.3e-1768.57Show/hide
Query:  LVEIELPVPDTLPTSAESSRISSSTWVELYIESVHIEGQRVS--LEEDDVRWLHAIFRAKLAGGPGGAVL
        +VEIELPVPDTLPTSAESS  +SSTW+ELY+E VH+E   ++  + EDDV WLHA+FRAK AGGPGG V+
Subjt:  LVEIELPVPDTLPTSAESSRISSSTWVELYIESVHIEGQRVS--LEEDDVRWLHAIFRAKLAGGPGGAVL

TYK17971.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]8.3e-1740.11Show/hide
Query:  KAHAKPTIAESEFNLSTPGFLFGLSYIEGIKRIFVQTRRIS---GVLWCFEHS----GVYKLNQKLYL-----------------VEIELPVPDTLPTSA
        K++      + EF +    FL  LS   G+ R   +  RIS   G    F  +     V+K NQKLYL                 VEIELPVPDTLPTSA
Subjt:  KAHAKPTIAESEFNLSTPGFLFGLSYIEGIKRIFVQTRRIS---GVLWCFEHS----GVYKLNQKLYL-----------------VEIELPVPDTLPTSA

Query:  ESSRISSSTWVELYIESVHIE-------------------GQRVSLEEDDVRWLHAIFRAKLAGGPGGAVLGFAECS
        ES   +SSTW+ELY ESVH+E                   G    +  DDV WLHA+FRAK AGGPGG V  + + S
Subjt:  ESSRISSSTWVELYIESVHIE-------------------GQRVSLEEDDVRWLHAIFRAKLAGGPGGAVLGFAECS

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]8.3e-1768.57Show/hide
Query:  LVEIELPVPDTLPTSAESSRISSSTWVELYIESVHIEGQRVS--LEEDDVRWLHAIFRAKLAGGPGGAVL
        +VEIELPVPDTLPTSAESS  +SSTW+ELY+E VH+E   ++  + EDDV WLHA+FRAK AGGPGG V+
Subjt:  LVEIELPVPDTLPTSAESSRISSSTWVELYIESVHIEGQRVS--LEEDDVRWLHAIFRAKLAGGPGGAVL

TrEMBL top hitse value%identityAlignment
A0A5A7TKT0 Reverse transcriptase4.0e-1740.11Show/hide
Query:  KAHAKPTIAESEFNLSTPGFLFGLSYIEGIKRIFVQTRRIS---GVLWCFEHS----GVYKLNQKLYL-----------------VEIELPVPDTLPTSA
        K++      + EF +    FL  LS   G+ R   +  RIS   G    F  +     V+K NQKLYL                 VEIELPVPDTLPTSA
Subjt:  KAHAKPTIAESEFNLSTPGFLFGLSYIEGIKRIFVQTRRIS---GVLWCFEHS----GVYKLNQKLYL-----------------VEIELPVPDTLPTSA

Query:  ESSRISSSTWVELYIESVHIE-------------------GQRVSLEEDDVRWLHAIFRAKLAGGPGGAVLGFAECS
        ES   +SSTW+ELY ESVH+E                   G    +  DDV WLHA+FRAK AGGPGG V  + + S
Subjt:  ESSRISSSTWVELYIESVHIE-------------------GQRVSLEEDDVRWLHAIFRAKLAGGPGGAVLGFAECS

A0A5A7UAH6 CCHC-type domain-containing protein1.5e-1943.21Show/hide
Query:  IGKAHAKPTIAESEFNLSTPGFLFGLSYIEGIKRIFVQTRRISGVLWCFE--------------HSGVYKLNQKLYLVEIELPVPDTLPTSAESSRISSS
        I K +AKP IAES  N      LFGLSY+E ++    +    SG    F               H+G  KL++    VEIELPVPDTLPTSAESS+ +SS
Subjt:  IGKAHAKPTIAESEFNLSTPGFLFGLSYIEGIKRIFVQTRRISGVLWCFE--------------HSGVYKLNQKLYLVEIELPVPDTLPTSAESSRISSS

Query:  TWVELYIESVHI------------------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGAVL
        TW+ELY ESVH+                  EG    +  DD+ WLHA+F AK AG PGG V+
Subjt:  TWVELYIESVHI------------------EGQRVSLEEDDVRWLHAIFRAKLAGGPGGAVL

A0A5A7VMG9 Reverse transcriptase4.0e-1768.57Show/hide
Query:  LVEIELPVPDTLPTSAESSRISSSTWVELYIESVHIEGQRVS--LEEDDVRWLHAIFRAKLAGGPGGAVL
        +VEIELPVPDTLPTSAESS  +SSTW+ELY+E VH+E   ++  + EDDV WLHA+FRAK AGGPGG V+
Subjt:  LVEIELPVPDTLPTSAESSRISSSTWVELYIESVHIEGQRVS--LEEDDVRWLHAIFRAKLAGGPGGAVL

A0A5D3D150 Reverse transcriptase4.0e-1740.11Show/hide
Query:  KAHAKPTIAESEFNLSTPGFLFGLSYIEGIKRIFVQTRRIS---GVLWCFEHS----GVYKLNQKLYL-----------------VEIELPVPDTLPTSA
        K++      + EF +    FL  LS   G+ R   +  RIS   G    F  +     V+K NQKLYL                 VEIELPVPDTLPTSA
Subjt:  KAHAKPTIAESEFNLSTPGFLFGLSYIEGIKRIFVQTRRIS---GVLWCFEHS----GVYKLNQKLYL-----------------VEIELPVPDTLPTSA

Query:  ESSRISSSTWVELYIESVHIE-------------------GQRVSLEEDDVRWLHAIFRAKLAGGPGGAVLGFAECS
        ES   +SSTW+ELY ESVH+E                   G    +  DDV WLHA+FRAK AGGPGG V  + + S
Subjt:  ESSRISSSTWVELYIESVHIE-------------------GQRVSLEEDDVRWLHAIFRAKLAGGPGGAVLGFAECS

A0A5D3DX39 Reverse transcriptase4.0e-1768.57Show/hide
Query:  LVEIELPVPDTLPTSAESSRISSSTWVELYIESVHIEGQRVS--LEEDDVRWLHAIFRAKLAGGPGGAVL
        +VEIELPVPDTLPTSAESS  +SSTW+ELY+E VH+E   ++  + EDDV WLHA+FRAK AGGPGG V+
Subjt:  LVEIELPVPDTLPTSAESSRISSSTWVELYIESVHIEGQRVS--LEEDDVRWLHAIFRAKLAGGPGGAVL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAAACGAGATTTATTGTTTGAAAGAGGTTTTGGTGAAGATTTACCGCATTTCTTGAGGGCTGGAATGGCAAATCACGGGTGGAGTCAATTCTGTGCAAAACCAGA
TCCATTAAATTCGAACATTGTTCGTGAATTTTACGGGAACATAGATGATCAAGAAGGATTCCAAGTCATGGTTCGAGGGCTCGGACTAGTTAGCTTAATTAGATCAAGGA
AGAAGAAGAAGAAGATTTTCATGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAACCATAGCAGAATCTGAGTTCAACCTGTCAACCCCTGGTTTTTTA
TTCGGTTTGAGCTACATAGAAGGAATTAAGAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAA
GCTCTATTTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAATAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCC
ATATTGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGCAGTGCTTGGTTTTGCA
GAATGCTCAGAATATGATGCTAAGCGACTTGAGGGAGCAAAAATCCGTGATCCAGCAAAGCAGGGAGCAAAATTGCCACGTAAGCTGCACGTAATCCATTTTATGAAGTG
A
mRNA sequenceShow/hide mRNA sequence
ATGTTGAAACGAGATTTATTGTTTGAAAGAGGTTTTGGTGAAGATTTACCGCATTTCTTGAGGGCTGGAATGGCAAATCACGGGTGGAGTCAATTCTGTGCAAAACCAGA
TCCATTAAATTCGAACATTGTTCGTGAATTTTACGGGAACATAGATGATCAAGAAGGATTCCAAGTCATGGTTCGAGGGCTCGGACTAGTTAGCTTAATTAGATCAAGGA
AGAAGAAGAAGAAGATTTTCATGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAACCATAGCAGAATCTGAGTTCAACCTGTCAACCCCTGGTTTTTTA
TTCGGTTTGAGCTACATAGAAGGAATTAAGAGGATTTTCGTGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAA
GCTCTATTTGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAATAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCC
ATATTGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTCCGGGCTAAGCTAGCAGGTGGTCCGGGAGGGGCAGTGCTTGGTTTTGCA
GAATGCTCAGAATATGATGCTAAGCGACTTGAGGGAGCAAAAATCCGTGATCCAGCAAAGCAGGGAGCAAAATTGCCACGTAAGCTGCACGTAATCCATTTTATGAAGTG
A
Protein sequenceShow/hide protein sequence
MLKRDLLFERGFGEDLPHFLRAGMANHGWSQFCAKPDPLNSNIVREFYGNIDDQEGFQVMVRGLGLVSLIRSRKKKKKIFMVLRLKKIGKAHAKPTIAESEFNLSTPGFL
FGLSYIEGIKRIFVQTRRISGVLWCFEHSGVYKLNQKLYLVEIELPVPDTLPTSAESSRISSSTWVELYIESVHIEGQRVSLEEDDVRWLHAIFRAKLAGGPGGAVLGFA
ECSEYDAKRLEGAKIRDPAKQGAKLPRKLHVIHFMK