; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg004974 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004974
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRetrotransposon gag protein
Genome locationscaffold9:21738462..21739662
RNA-Seq ExpressionSpg004974
SyntenySpg004974
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032121.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.1e-0753.85Show/hide
Query:  STFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLINIEGSLKFLLPKF
        ST+ F RL +TNDQ +R+M  L+ K F E N  +K+ S +PSRMKRK SV IN EGSL  + P+F
Subjt:  STFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLINIEGSLKFLLPKF

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.1e-0653.85Show/hide
Query:  STFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLINIEGSLKFLLPKF
        ST  F RL +TNDQ +R+M +L+ K F E N  +K+ S +PSRMKRK SV IN EGSL  + P+F
Subjt:  STFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLINIEGSLKFLLPKF

KAA0051997.1 hypothetical protein E6C27_scaffold60G004810 [Cucumis melo var. makuwa]6.7e-0948.81Show/hide
Query:  MSDVHLHSTFSFPKAKCFYIEEK----STFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLINIEGS
        MS+++LH  FSF K K  Y   K    ST  F RL +T DQ +R+M +L++K F E N  +K+ S +PSRMKRK SV IN EG+
Subjt:  MSDVHLHSTFSFPKAKCFYIEEK----STFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLINIEGS

KAA0068201.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.1e-0653.85Show/hide
Query:  STFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLINIEGSLKFLLPKF
        ST  F RL +TNDQ +R+M +L+ K F E N  +K+ S +PSRMKRK SV IN EGSL  + P+F
Subjt:  STFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLINIEGSLKFLLPKF

TYK30948.1 hypothetical protein E5676_scaffold455G001730 [Cucumis melo var. makuwa]2.8e-0750Show/hide
Query:  MSDVHLHSTFSFPKAKCFYIEE--KSTFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLIN
        MS+V+ HS FSF KAK  +IEE   ST  F  L +TNDQ +R+M  L+ K F E N+ +K+ S + S MKRK  V IN
Subjt:  MSDVHLHSTFSFPKAKCFYIEE--KSTFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLIN

TrEMBL top hitse value%identityAlignment
A0A5A7SRE2 Ty3-gypsy retrotransposon protein3.9e-0753.85Show/hide
Query:  STFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLINIEGSLKFLLPKF
        ST+ F RL +TNDQ +R+M  L+ K F E N  +K+ S +PSRMKRK SV IN EGSL  + P+F
Subjt:  STFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLINIEGSLKFLLPKF

A0A5A7TQ06 Retrotransposon gag protein1.5e-0653.85Show/hide
Query:  STFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLINIEGSLKFLLPKF
        ST  F RL +TNDQ +R+M +L+ K F E N  +K+ S +PSRMKRK SV IN EGSL  + P+F
Subjt:  STFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLINIEGSLKFLLPKF

A0A5A7UC34 Uncharacterized protein3.2e-0948.81Show/hide
Query:  MSDVHLHSTFSFPKAKCFYIEEK----STFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLINIEGS
        MS+++LH  FSF K K  Y   K    ST  F RL +T DQ +R+M +L++K F E N  +K+ S +PSRMKRK SV IN EG+
Subjt:  MSDVHLHSTFSFPKAKCFYIEEK----STFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLINIEGS

A0A5A7VRG7 Retrotransposon gag protein1.5e-0653.85Show/hide
Query:  STFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLINIEGSLKFLLPKF
        ST  F RL +TNDQ +R+M +L+ K F E N  +K+ S +PSRMKRK SV IN EGSL  + P+F
Subjt:  STFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLINIEGSLKFLLPKF

A0A5D3BBF9 Gag protease polyprotein1.5e-0653.85Show/hide
Query:  STFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLINIEGSLKFLLPKF
        ST  F RL +TNDQ +R+M +L+ K F E N  +K+ S +PSRMKRK SV IN EGSL  + P+F
Subjt:  STFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLINIEGSLKFLLPKF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCGACGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTTTCTACATCGAAGAAAAATCAACCTTTGTTTTTTATCGCCTCACAGTAACAAACGATCA
ATCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGCGGCGAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTC
TCATAAATATAGAAGGTTCCTTAAAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCTATGCTAAGCTGCGTTGTTGCCCTACTTCCTTCTTCAAGTTTGAAGGTTCCC
GGCTTGCGCTACTGCGCTACTTCCTTCTTTAAGTTTGAAGGTTCTCACGCTGCGTTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGGTCCTCATGCACTACGCTATTGTTC
CTTCTCCAAGTTTGAAGGTTTTCACGTGTTCTCATGTTCTTACGCTACAGCTGCAGTTCATTCTCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCAGCAGTTCATTCTCT
CCATGTTCGAGGGTGCTTACGTTGTACGCTACTGCGTTGTTCCTTCTCCAAGTTTGAAGGTTCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCCGACGTCCACCTTCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTTTCTACATCGAAGAAAAATCAACCTTTGTTTTTTATCGCCTCACAGTAACAAACGATCA
ATCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGCGGCGAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTC
TCATAAATATAGAAGGTTCCTTAAAGTTCCTTCTCCCCAAGTTCGAAGGTTCTCATGCTATGCTAAGCTGCGTTGTTGCCCTACTTCCTTCTTCAAGTTTGAAGGTTCCC
GGCTTGCGCTACTGCGCTACTTCCTTCTTTAAGTTTGAAGGTTCTCACGCTGCGTTGTTTCGCTGTTCCTTCTCCAAGTTCGAAGGTCCTCATGCACTACGCTATTGTTC
CTTCTCCAAGTTTGAAGGTTTTCACGTGTTCTCATGTTCTTACGCTACAGCTGCAGTTCATTCTCTCCAAGTTCGAAGGTTCTCATGCGCTTCGCAGCAGTTCATTCTCT
CCATGTTCGAGGGTGCTTACGTTGTACGCTACTGCGTTGTTCCTTCTCCAAGTTTGAAGGTTCTCTGA
Protein sequenceShow/hide protein sequence
MSDVHLHSTFSFPKAKCFYIEEKSTFVFYRLTVTNDQSKRKMDNLELKLFDEVNSGEKLQSSIPSRMKRKFSVLINIEGSLKFLLPKFEGSHAMLSCVVALLPSSSLKVP
GLRYCATSFFKFEGSHAALFRCSFSKFEGPHALRYCSFSKFEGFHVFSCSYATAAVHSLQVRRFSCASQQFILSMFEGAYVVRYCVVPSPSLKVL