; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg004975 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg004975
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationscaffold9:22615960..22629453
RNA-Seq ExpressionSpg004975
SyntenySpg004975
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037581.1 reverse transcriptase [Cucumis melo var. makuwa]6.1e-1539.27Show/hide
Query:  LWFSLVFRALWGVQVESEALFGMVGKLIQFPTTPRGNRSSLQTRKLAKTPESIWYRVHTGYILLLTLCVLRDKDAVVSAGWAPLRHRR------------
        L  S  F  LW ++V    L  +          PRGNR SLQT ++ KT              L TL VL D DAVVSAG APLR RR            
Subjt:  LWFSLVFRALWGVQVESEALFGMVGKLIQFPTTPRGNRSSLQTRKLAKTPESIWYRVHTGYILLLTLCVLRDKDAVVSAGWAPLRHRR------------

Query:  -------LEIELPVPDTLPTSAESSRSSS---ISAFQEGQRVSL----------------------EEDDVRWLHAIFRTKLVGGSGGCVT
               +EIELPVPD LPTSAESSRS+S   +  + E   V +                        DDV WLHAIFR K  GG GG VT
Subjt:  -------LEIELPVPDTLPTSAESSRSSS---ISAFQEGQRVSL----------------------EEDDVRWLHAIFRTKLVGGSGGCVT

KAA0045180.1 uncharacterized protein E6C27_scaffold30G001810 [Cucumis melo var. makuwa]1.3e-1743.86Show/hide
Query:  QVESEALFGMVGKLIQFPTT-----PRGNRSSLQTRKLAKTPESIWYRVHTGYILLLTLCVLRDKDAVVSAGWAPLRHRR----LEIELPVPDTLPTSAE
        QVESEALF MVGKLIQ+PTT     PRGNR SLQT +L KT              L TL VL D D VVSAG A LR RR    +EIELPVPDTLPTSA+
Subjt:  QVESEALFGMVGKLIQFPTT-----PRGNRSSLQTRKLAKTPESIWYRVHTGYILLLTLCVLRDKDAVVSAGWAPLRHRR----LEIELPVPDTLPTSAE

Query:  SSRSSSISAFQ-----------------------------EGQRVSLEEDDVRWLHAIFRTKLVGGSGGCV
         S  + +  +                              EG    +  DDV  +HA+F+ K  G  GG V
Subjt:  SSRSSSISAFQ-----------------------------EGQRVSLEEDDVRWLHAIFRTKLVGGSGGCV

TYJ96574.1 uncharacterized protein E5676_scaffold791G00040 [Cucumis melo var. makuwa]3.5e-1538.05Show/hide
Query:  EIAQAKAAIAESEFNLSTSGFSFGLSYTEGTKRAQDFRANQEDLWFSLVFRALWGVQVESEALFGMVGKLIQFPTT-----PRGNRSSLQTRKLAKT---
        E   AK  IAES  N       F LSY EGTKR   F   +       VF      QVESEA+FG+V KLIQ+PTT     P GNR SLQ  +L KT   
Subjt:  EIAQAKAAIAESEFNLSTSGFSFGLSYTEGTKRAQDFRANQEDLWFSLVFRALWGVQVESEALFGMVGKLIQFPTT-----PRGNRSSLQTRKLAKT---

Query:  -------PESIWYRVHTGYIL-LLTLCVLRDKDAVVS-AGWAPLRHRRLEIELPVPDTLPTSAESSRSS--SISAF-----------------QEGQRVS
                  ++  V T  I  L TL VLRD +A V  + W  +  +RL   L V D  P    S  SS   +  F                  +G    
Subjt:  -------PESIWYRVHTGYIL-LLTLCVLRDKDAVVS-AGWAPLRHRRLEIELPVPDTLPTSAESSRSS--SISAF-----------------QEGQRVS

Query:  LEEDDVRWLHAIFRTKLVGGSGGCVT
        +  DDV WLHA+FR K  GG GG VT
Subjt:  LEEDDVRWLHAIFRTKLVGGSGGCVT

TYJ96965.1 uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]5.1e-1478.46Show/hide
Query:  QVESEALFGMVGKLIQFPTT-----PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSS
        QVESEALFGMV KLIQ+PTT     PRGNR S QT KL KTVEIELPVPDTLPTSAESS S+SS+
Subjt:  QVESEALFGMVGKLIQFPTT-----PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSS

TYK03091.1 reverse transcriptase [Cucumis melo var. makuwa]6.1e-1539.27Show/hide
Query:  LWFSLVFRALWGVQVESEALFGMVGKLIQFPTTPRGNRSSLQTRKLAKTPESIWYRVHTGYILLLTLCVLRDKDAVVSAGWAPLRHRR------------
        L  S  F  LW ++V    L  +          PRGNR SLQT ++ KT              L TL VL D DAVVSAG APLR RR            
Subjt:  LWFSLVFRALWGVQVESEALFGMVGKLIQFPTTPRGNRSSLQTRKLAKTPESIWYRVHTGYILLLTLCVLRDKDAVVSAGWAPLRHRR------------

Query:  -------LEIELPVPDTLPTSAESSRSSS---ISAFQEGQRVSL----------------------EEDDVRWLHAIFRTKLVGGSGGCVT
               +EIELPVPD LPTSAESSRS+S   +  + E   V +                        DDV WLHAIFR K  GG GG VT
Subjt:  -------LEIELPVPDTLPTSAESSRSSS---ISAFQEGQRVSL----------------------EEDDVRWLHAIFRTKLVGGSGGCVT

TrEMBL top hitse value%identityAlignment
A0A5A7T7M6 Reverse transcriptase2.9e-1539.27Show/hide
Query:  LWFSLVFRALWGVQVESEALFGMVGKLIQFPTTPRGNRSSLQTRKLAKTPESIWYRVHTGYILLLTLCVLRDKDAVVSAGWAPLRHRR------------
        L  S  F  LW ++V    L  +          PRGNR SLQT ++ KT              L TL VL D DAVVSAG APLR RR            
Subjt:  LWFSLVFRALWGVQVESEALFGMVGKLIQFPTTPRGNRSSLQTRKLAKTPESIWYRVHTGYILLLTLCVLRDKDAVVSAGWAPLRHRR------------

Query:  -------LEIELPVPDTLPTSAESSRSSS---ISAFQEGQRVSL----------------------EEDDVRWLHAIFRTKLVGGSGGCVT
               +EIELPVPD LPTSAESSRS+S   +  + E   V +                        DDV WLHAIFR K  GG GG VT
Subjt:  -------LEIELPVPDTLPTSAESSRSSS---ISAFQEGQRVSL----------------------EEDDVRWLHAIFRTKLVGGSGGCVT

A0A5A7TPS6 Retrotrans_gag domain-containing protein6.3e-1843.86Show/hide
Query:  QVESEALFGMVGKLIQFPTT-----PRGNRSSLQTRKLAKTPESIWYRVHTGYILLLTLCVLRDKDAVVSAGWAPLRHRR----LEIELPVPDTLPTSAE
        QVESEALF MVGKLIQ+PTT     PRGNR SLQT +L KT              L TL VL D D VVSAG A LR RR    +EIELPVPDTLPTSA+
Subjt:  QVESEALFGMVGKLIQFPTT-----PRGNRSSLQTRKLAKTPESIWYRVHTGYILLLTLCVLRDKDAVVSAGWAPLRHRR----LEIELPVPDTLPTSAE

Query:  SSRSSSISAFQ-----------------------------EGQRVSLEEDDVRWLHAIFRTKLVGGSGGCV
         S  + +  +                              EG    +  DDV  +HA+F+ K  G  GG V
Subjt:  SSRSSSISAFQ-----------------------------EGQRVSLEEDDVRWLHAIFRTKLVGGSGGCV

A0A5D3BC77 CCHC-type domain-containing protein1.7e-1538.05Show/hide
Query:  EIAQAKAAIAESEFNLSTSGFSFGLSYTEGTKRAQDFRANQEDLWFSLVFRALWGVQVESEALFGMVGKLIQFPTT-----PRGNRSSLQTRKLAKT---
        E   AK  IAES  N       F LSY EGTKR   F   +       VF      QVESEA+FG+V KLIQ+PTT     P GNR SLQ  +L KT   
Subjt:  EIAQAKAAIAESEFNLSTSGFSFGLSYTEGTKRAQDFRANQEDLWFSLVFRALWGVQVESEALFGMVGKLIQFPTT-----PRGNRSSLQTRKLAKT---

Query:  -------PESIWYRVHTGYIL-LLTLCVLRDKDAVVS-AGWAPLRHRRLEIELPVPDTLPTSAESSRSS--SISAF-----------------QEGQRVS
                  ++  V T  I  L TL VLRD +A V  + W  +  +RL   L V D  P    S  SS   +  F                  +G    
Subjt:  -------PESIWYRVHTGYIL-LLTLCVLRDKDAVVS-AGWAPLRHRRLEIELPVPDTLPTSAESSRSS--SISAF-----------------QEGQRVS

Query:  LEEDDVRWLHAIFRTKLVGGSGGCVT
        +  DDV WLHA+FR K  GG GG VT
Subjt:  LEEDDVRWLHAIFRTKLVGGSGGCVT

A0A5D3BET3 Uncharacterized protein2.5e-1478.46Show/hide
Query:  QVESEALFGMVGKLIQFPTT-----PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSS
        QVESEALFGMV KLIQ+PTT     PRGNR S QT KL KTVEIELPVPDTLPTSAESS S+SS+
Subjt:  QVESEALFGMVGKLIQFPTT-----PRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSS

A0A5D3BTP3 Reverse transcriptase2.9e-1539.27Show/hide
Query:  LWFSLVFRALWGVQVESEALFGMVGKLIQFPTTPRGNRSSLQTRKLAKTPESIWYRVHTGYILLLTLCVLRDKDAVVSAGWAPLRHRR------------
        L  S  F  LW ++V    L  +          PRGNR SLQT ++ KT              L TL VL D DAVVSAG APLR RR            
Subjt:  LWFSLVFRALWGVQVESEALFGMVGKLIQFPTTPRGNRSSLQTRKLAKTPESIWYRVHTGYILLLTLCVLRDKDAVVSAGWAPLRHRR------------

Query:  -------LEIELPVPDTLPTSAESSRSSS---ISAFQEGQRVSL----------------------EEDDVRWLHAIFRTKLVGGSGGCVT
               +EIELPVPD LPTSAESSRS+S   +  + E   V +                        DDV WLHAIFR K  GG GG VT
Subjt:  -------LEIELPVPDTLPTSAESSRSSS---ISAFQEGQRVSL----------------------EEDDVRWLHAIFRTKLVGGSGGCVT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGTTCCCTTAAGTGGTGACTCTGAGTCTTTAACAAAGGGCCCTACCCTCTCAATGGCACGAGAGGGTTTTCTGTTTGATGGTCCATTAGGTCCCACTGCGAAGAA
TAACAAGGAAGTTGCTGCGTTTTTGATCGTTGAAGCATCGTTGGCAAAAAACGGCCAAGTTTACAACGAAGGATTCAGATTGAGATCCCGACCAGGATTCAGACCAAGAT
CCCGGCCGATATTCAGACCAAGATCCCGATCGAGATTCAGACCAGGATCTAGACAGATTGTGCGGTTCGACCCGGTTTTGGCTACTTTTGGTCAGGATTTTCGTGCAAAC
CAGGAGGATCTTTGGTTTTCTCTGGTTTTTCGTGCATTATGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACGCC
AAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCT
CCAGTTCAGCATTTCAGGAGGGTCAACGGGAAATAGCTCAAGCAAAGGCAGCCATAGCAGAATCTGAGTTCAACCTGTCTACCTCTGGTTTTAGTTTTGGTTTGAGCTAC
ACAGAAGGAACTAAGAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTTTGGTTTTCTCTGGTTTTTCGTGCATTATGGGGTGTACAAGTTGAATCAGAAGCTCTATT
TGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTCCCGAGTCTATATGGTATCGTGTGC
ACACAGGTTATATTCTGTTGTTGACGTTATGTGTACTCCGTGACAAAGATGCTGTCGTGAGTGCTGGGTGGGCCCCACTACGACATAGACGATTAGAGATCGAGCTCCCG
GTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCATTTCAGCGTTTCAAGAGGGTCAACGGGTATCATTAGAGGAGGACGATGTCCGTTGGCTTCA
CGCCATCTTTCGAACTAAGCTAGTAGGTGGTTCGGGAGGGTGTGTGACAATTTTGGTCCGTCACCCTGGGAGTGATCCCCTCCGGATGGTGTTTGCGTGGATCAATATCA
AGGTGAATGAAGGAGTATTTTATATATCTAAGAACTATTGGAATATGAGTTATTCTGGTAATAAGGATTGGCTGAGATTGTCTCAATTCAGAGGAGGAGTGGCTGACTGC
CCTACGGTAGCT
mRNA sequenceShow/hide mRNA sequence
ATGAGTGTTCCCTTAAGTGGTGACTCTGAGTCTTTAACAAAGGGCCCTACCCTCTCAATGGCACGAGAGGGTTTTCTGTTTGATGGTCCATTAGGTCCCACTGCGAAGAA
TAACAAGGAAGTTGCTGCGTTTTTGATCGTTGAAGCATCGTTGGCAAAAAACGGCCAAGTTTACAACGAAGGATTCAGATTGAGATCCCGACCAGGATTCAGACCAAGAT
CCCGGCCGATATTCAGACCAAGATCCCGATCGAGATTCAGACCAGGATCTAGACAGATTGTGCGGTTCGACCCGGTTTTGGCTACTTTTGGTCAGGATTTTCGTGCAAAC
CAGGAGGATCTTTGGTTTTCTCTGGTTTTTCGTGCATTATGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACGCC
AAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCT
CCAGTTCAGCATTTCAGGAGGGTCAACGGGAAATAGCTCAAGCAAAGGCAGCCATAGCAGAATCTGAGTTCAACCTGTCTACCTCTGGTTTTAGTTTTGGTTTGAGCTAC
ACAGAAGGAACTAAGAGAGCACAGGATTTTCGTGCAAACCAGGAGGATCTTTGGTTTTCTCTGGTTTTTCGTGCATTATGGGGTGTACAAGTTGAATCAGAAGCTCTATT
TGGTATGGTTGGAAAGCTTATTCAATTTCCTACAACGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGAAACTAGCTAAGACTCCCGAGTCTATATGGTATCGTGTGC
ACACAGGTTATATTCTGTTGTTGACGTTATGTGTACTCCGTGACAAAGATGCTGTCGTGAGTGCTGGGTGGGCCCCACTACGACATAGACGATTAGAGATCGAGCTCCCG
GTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCATTTCAGCGTTTCAAGAGGGTCAACGGGTATCATTAGAGGAGGACGATGTCCGTTGGCTTCA
CGCCATCTTTCGAACTAAGCTAGTAGGTGGTTCGGGAGGGTGTGTGACAATTTTGGTCCGTCACCCTGGGAGTGATCCCCTCCGGATGGTGTTTGCGTGGATCAATATCA
AGGTGAATGAAGGAGTATTTTATATATCTAAGAACTATTGGAATATGAGTTATTCTGGTAATAAGGATTGGCTGAGATTGTCTCAATTCAGAGGAGGAGTGGCTGACTGC
CCTACGGTAGCT
Protein sequenceShow/hide protein sequence
MSVPLSGDSESLTKGPTLSMAREGFLFDGPLGPTAKNNKEVAAFLIVEASLAKNGQVYNEGFRLRSRPGFRPRSRPIFRPRSRSRFRPGSRQIVRFDPVLATFGQDFRAN
QEDLWFSLVFRALWGVQVESEALFGMVGKLIQFPTTPRGNRSSLQTRKLAKTVEIELPVPDTLPTSAESSRSSSSSAFQEGQREIAQAKAAIAESEFNLSTSGFSFGLSY
TEGTKRAQDFRANQEDLWFSLVFRALWGVQVESEALFGMVGKLIQFPTTPRGNRSSLQTRKLAKTPESIWYRVHTGYILLLTLCVLRDKDAVVSAGWAPLRHRRLEIELP
VPDTLPTSAESSRSSSISAFQEGQRVSLEEDDVRWLHAIFRTKLVGGSGGCVTILVRHPGSDPLRMVFAWINIKVNEGVFYISKNYWNMSYSGNKDWLRLSQFRGGVADC
PTVA