CuGenDBv2

Gene ID	Spg004980
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	F-box domain containing protein
Genome location	scaffold4:10241006..10242479
RNA-Seq Expression	Spg004980
Synteny	Spg004980
Gene Ontology terms	GO:0061458 - reproductive system development (biological process) GO:0005634 - nucleus (cellular component) GO:0005515 - protein binding (molecular function) GO:0016740 - transferase activity (molecular function)
InterPro domains	IPR036047 - F-box-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575300.1 putative F-box protein, partial [Cucurbita argyrosperma subsp. sororia]

2.6e-65

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Query:  MGKKQSIASARDRVVTRSQSIAMEREKISKRSSPNPVVAVEPEGLVKRMRRDIKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRR
        MGKK SIASARDRVVTRSQSIAMEREKIS  SSPNPVVAVEPEG+VKRMRRDIKPIHSCSSPRS FLT HSSASSSASSS+ W                 
Subjt:  MGKKQSIASARDRVVTRSQSIAMEREKISKRSSPNPVVAVEPEGLVKRMRRDIKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRR

Query:  YDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR
        YDADVWTEVAKFLDGRSL+MLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQ+TAFKWIKLYVSAF      + R
Subjt:  YDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR

TYK24589.1 putative F-box protein [Cucumis melo var. makuwa]

4.9e-64

77.97

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Query:  MGKKQSIASARDRVVTRSQSIAMEREKISKRSSP--NPVVAVEPEGLVKRMRRDIKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAV
        M KK SIASARDRVVTRSQSI+MER K+SKRSSP  NPVVA EPEG+VKRMRRDIKPIHSCSSP SAFLT HSSASSSASSSS W               
Subjt:  MGKKQSIASARDRVVTRSQSIAMEREKISKRSSP--NPVVAVEPEGLVKRMRRDIKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAV

Query:  RRYDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR
          YDADVWTEVAKFLDGRSL+MLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQ+TAFKWIKLYVSAF      + R
Subjt:  RRYDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR

XP_004140675.1 probable F-box protein At3g61730 [Cucumis sativus]

2.2e-64

78.41

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Query:  MGKKQSIASARDRVVTRSQSIAMEREKISKRSSP-NPVVAVEPEGLVKRMRRDIKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVR
        MGKK SIASARDRVVTRSQSI+MER K++KRSSP NPVVA EPEG+VKRMRRDIKPIHSCSSPRSAFLT HSSASSSASSSS W                
Subjt:  MGKKQSIASARDRVVTRSQSIAMEREKISKRSSP-NPVVAVEPEGLVKRMRRDIKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVR

Query:  RYDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR
         YDADVWTEVAKFLDGRSL+MLAATSRWFYR VMEDSIWKYVCLRDLQVPAPQ+TAFKWIKLYVSAF      + R
Subjt:  RYDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR

XP_023548391.1 probable F-box protein At3g61730 [Cucurbita pepo subsp. pepo]

2.6e-65

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Query:  MGKKQSIASARDRVVTRSQSIAMEREKISKRSSPNPVVAVEPEGLVKRMRRDIKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRR
        MGKK SIASARDRVVTRSQSIAMEREKIS  SSPNPVVAVEPEG+VKRMRRDIKPIHSCSSPRS FLT HSSASSSASSS+ W                 
Subjt:  MGKKQSIASARDRVVTRSQSIAMEREKISKRSSPNPVVAVEPEGLVKRMRRDIKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRR

Query:  YDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR
        YDADVWTEVAKFLDGRSL+MLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQ+TAFKWIKLYVSAF      + R
Subjt:  YDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR

XP_038875515.1 probable F-box protein At3g61730 [Benincasa hispida]

4.4e-65

79.43

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Query:  MGKKQSIASARDRVVTRSQSIAMEREKISKRSSPNPVVAVEPEGLVKRMRRDIKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRR
        MGKK SIASARDRVVTRS SIAMER K+SKRSSPN VVA EPEG VKRMRRDIKPIHSCSSPRSAFLT HSSASSSASSSS W                 
Subjt:  MGKKQSIASARDRVVTRSQSIAMEREKISKRSSPNPVVAVEPEGLVKRMRRDIKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRR

Query:  YDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR
        YDADVWTEVAKFLDGRSL+MLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQ+TAFKWIKLYVSAF      + R
Subjt:  YDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KD88 Uncharacterized protein

1.1e-64

78.41

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Query:  MGKKQSIASARDRVVTRSQSIAMEREKISKRSSP-NPVVAVEPEGLVKRMRRDIKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVR
        MGKK SIASARDRVVTRSQSI+MER K++KRSSP NPVVA EPEG+VKRMRRDIKPIHSCSSPRSAFLT HSSASSSASSSS W                
Subjt:  MGKKQSIASARDRVVTRSQSIAMEREKISKRSSP-NPVVAVEPEGLVKRMRRDIKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVR

Query:  RYDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR
         YDADVWTEVAKFLDGRSL+MLAATSRWFYR VMEDSIWKYVCLRDLQVPAPQ+TAFKWIKLYVSAF      + R
Subjt:  RYDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR

A0A1S3CBL0 probable F-box protein At3g61730

4.5e-55

76.77

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Query:  MEREKISKRSSP--NPVVAVEPEGLVKRMRRDIKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRRYDADVWTEVAKFLDGRSLIM
        MER K+SKRSSP  NPVVA EPEG+VKRMRRDIKPIHSCSSP SAFLT HSSASSSASSSS W                 YDADVWTEVAKFLDGRSL+M
Subjt:  MEREKISKRSSP--NPVVAVEPEGLVKRMRRDIKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRRYDADVWTEVAKFLDGRSLIM

Query:  LAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR
        LAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQ+TAFKWIKLYVSAF      + R
Subjt:  LAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR

A0A5A7TE30 Putative F-box protein

1.7e-30

86.84

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Query:  RYDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR
        RYDADVWTEVAKFLDGRSL+MLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQ+TAFKWIKLYVSAF      + R
Subjt:  RYDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR

A0A5D3DMQ8 Putative F-box protein

2.4e-64

77.97

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Query:  MGKKQSIASARDRVVTRSQSIAMEREKISKRSSP--NPVVAVEPEGLVKRMRRDIKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAV
        M KK SIASARDRVVTRSQSI+MER K+SKRSSP  NPVVA EPEG+VKRMRRDIKPIHSCSSP SAFLT HSSASSSASSSS W               
Subjt:  MGKKQSIASARDRVVTRSQSIAMEREKISKRSSP--NPVVAVEPEGLVKRMRRDIKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAV

Query:  RRYDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR
          YDADVWTEVAKFLDGRSL+MLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQ+TAFKWIKLYVSAF      + R
Subjt:  RRYDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR

A0A6J1DCT6 probable F-box protein At3g61730

2.0e-50

67.98

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Query:  MGKKQSIASARDRVVTRSQSIAMEREKISKRSSPNPVVAVEPEG-LVKRMRRDIKP--IHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIA
        MGKK SI+SARDRVVTRSQS AMERE++SKRS   P+ A EPEG + KR+RRD+K   IH CSSPRSAFLT        ASSSS W              
Subjt:  MGKKQSIASARDRVVTRSQSIAMEREKISKRSSPNPVVAVEPEG-LVKRMRRDIKP--IHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIA

Query:  VRRYDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR
           YDADVWTEVAKFLDGRSL+MLAATSRWFYRLVMEDSIWKYVCLRDLQV APQ TAFKWIKLYVSAF      + R
Subjt:  VRRYDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLR

SwissProt top hits

e value

%identity

Alignment

Q9FGB8 Probable F-box protein At5g36000

5.5e-18

39.47

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Query:  IKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRRYDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQ
        ++ IH C SPR +  T  S  S        W                 Y+ D+WT + +FLDG+SL+ L AT++WFY++ MED++W++ CLRDLQVP   
Subjt:  IKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRRYDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQ

Query:  YTAFKWIKLYVSAF
          +  WIK+Y SAF
Subjt:  YTAFKWIKLYVSAF

Q9M365 Probable F-box protein At3g61730

2.9e-19

54.55

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Query:  YDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAF
        Y+ D+WT +++FLDG+SL+ L AT++WFY++ MED++W++ CLRDLQVP P   +  WIK+Y SAF
Subjt:  YDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAF

Arabidopsis top hits

e value

%identity

Alignment

AT3G61730.1 reduced male fertility

2.1e-20

54.55

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Query:  YDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAF
        Y+ D+WT +++FLDG+SL+ L AT++WFY++ MED++W++ CLRDLQVP P   +  WIK+Y SAF
Subjt:  YDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAF

AT5G36000.1 BEST Arabidopsis thaliana protein match is: reduced male fertility (TAIR:AT3G61730.1)

3.9e-19

39.47

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Query:  IKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRRYDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQ
        ++ IH C SPR +  T  S  S        W                 Y+ D+WT + +FLDG+SL+ L AT++WFY++ MED++W++ CLRDLQVP   
Subjt:  IKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRRYDADVWTEVAKFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQ

Query:  YTAFKWIKLYVSAF
          +  WIK+Y SAF
Subjt:  YTAFKWIKLYVSAF

Sequences

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CDS sequence

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ATGGGGAAGAAACAGAGCATTGCTTCAGCGCGAGACCGAGTGGTTACGAGATCTCAATCCATTGCTATGGAGCGTGAAAAGATTTCGAAGCGATCATCGCCAAATCCAGT
TGTTGCTGTGGAGCCGGAAGGACTGGTAAAGCGAATGCGAAGAGATATTAAGCCCATTCATTCTTGCAGCTCTCCTCGTTCCGCTTTTCTTACTGTGCATTCCTCTGCTT
CATCCTCTGCGTCTTCATCTTCGTACTGGTTCGTTCTCTTTCTCTTTTCTGTTTCCATCCTGATAATCGCTGTTCGTAGGTACGACGCGGACGTGTGGACAGAGGTGGCG
AAGTTTCTGGATGGAAGATCTTTGATAATGCTTGCGGCGACTAGTCGGTGGTTTTACCGTTTAGTCATGGAAGACAGCATATGGAAGTATGTTTGCCTGCGTGATCTTCA
GGTCCCTGCTCCTCAATATACGGCCTTCAAATGGATCAAACTCTACGTTTCTGCCTTCGGTAAGGATCGGGTTCGAGTTCTCCGAGTTGTGTTCCTGCTCTGGTGA

mRNA sequence

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Protein sequence

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MGKKQSIASARDRVVTRSQSIAMEREKISKRSSPNPVVAVEPEGLVKRMRRDIKPIHSCSSPRSAFLTVHSSASSSASSSSYWFVLFLFSVSILIIAVRRYDADVWTEVA
KFLDGRSLIMLAATSRWFYRLVMEDSIWKYVCLRDLQVPAPQYTAFKWIKLYVSAFGKDRVRVLRVVFLLW

Spg004980 (gene) of Sponge gourd (cylindrica) v1 genome