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Spg005020 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005020
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold4:10856897..10859420
RNA-Seq ExpressionSpg005020
SyntenySpg005020
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MQL77781.1 hypothetical protein [Colocasia esculenta]5.9e-1751.69Show/hide
Query:  FEKYTPLSVPPYQVLAAVQNIDLLKRPERLKTNPDRRNKNKYCMFHCDHGHTTRNCIQLRDEIESLINEGYLKEFVNDGNNKRPARSER
        F  YTPL+V P Q+LA ++N   L+ P+R++++P +R++NKYC FH DHGH T  C QL+DEIE LI  GYL  FV   N +RP R +R
Subjt:  FEKYTPLSVPPYQVLAAVQNIDLLKRPERLKTNPDRRNKNKYCMFHCDHGHTTRNCIQLRDEIESLINEGYLKEFVNDGNNKRPARSER

MQL93545.1 hypothetical protein [Colocasia esculenta]5.9e-1752.81Show/hide
Query:  FEKYTPLSVPPYQVLAAVQNIDLLKRPERLKTNPDRRNKNKYCMFHCDHGHTTRNCIQLRDEIESLINEGYLKEFVNDGNNKRPARSER
        F  YTPL+V P Q+LA ++N   ++ P+R++++P RR++NKYC FH DHGH T  C QL+DEIE LI  GYL  FV   N  RP R ER
Subjt:  FEKYTPLSVPPYQVLAAVQNIDLLKRPERLKTNPDRRNKNKYCMFHCDHGHTTRNCIQLRDEIESLINEGYLKEFVNDGNNKRPARSER

XP_022158830.1 uncharacterized protein LOC111025293 [Momordica charantia]3.4e-1741.35Show/hide
Query:  RADPKEGRGQDREIGFIACERIMYARESKIAHHLKGRFEKYTPLSVPPYQVLAAVQNIDLLKRPERLKTNPDRRNKNKYCMFHCDHGHTTRNCIQLRDEI
        R DPK  R  D+  G          R+         +FEKYTP +VP  QVL  +++  LLK PER+K +  +R+K +YC+FH DHGH T++C  L++E+
Subjt:  RADPKEGRGQDREIGFIACERIMYARESKIAHHLKGRFEKYTPLSVPPYQVLAAVQNIDLLKRPERLKTNPDRRNKNKYCMFHCDHGHTTRNCIQLRDEI

Query:  ESLINEGYLKEFV-------NDGNNKRPARSER
        E LI  GYLKE+V       N  ++K PAR  R
Subjt:  ESLINEGYLKEFV-------NDGNNKRPARSER

XP_022159192.1 uncharacterized protein LOC111025612 [Momordica charantia]2.0e-1747.52Show/hide
Query:  LKGRFEKYTPLSVPPYQVLAAVQNIDLLKRPERLKTNPDRRNKNKYCMFHCDHGHTTRNCIQLRDEIESLINEGYLKEFVND--------GNNKRPARSE
        L  +FEKYTP +VP  QVL  +++  LLK PE +K  P++R+K +YC+FH DHGH T +C  L++E+E LI +GYLKE+V+D         +NK P R  
Subjt:  LKGRFEKYTPLSVPPYQVLAAVQNIDLLKRPERLKTNPDRRNKNKYCMFHCDHGHTTRNCIQLRDEIESLINEGYLKEFVND--------GNNKRPARSE

Query:  R
        R
Subjt:  R

XP_024042801.1 uncharacterized protein LOC112099618 [Citrus clementina]4.5e-1748.42Show/hide
Query:  ESKIAHHLKGRFEKYTPLSVPPYQVLAAVQNIDLLKRPERLKTNPDRRNKNKYCMFHCDHGHTTRNCIQLRDEIESLINEGYLKEFV-NDGNNKR
        E K    L+ RF +YTPL++P  QVL  ++N+DLL++P+ +K  P+RR+++KYC +H DH H   +C  L++EI+SLI  GYLKEFV  DG   R
Subjt:  ESKIAHHLKGRFEKYTPLSVPPYQVLAAVQNIDLLKRPERLKTNPDRRNKNKYCMFHCDHGHTTRNCIQLRDEIESLINEGYLKEFV-NDGNNKR

TrEMBL top hitse value%identityAlignment
A0A6J1CNT2 uncharacterized protein LOC1110128054.1e-1647.42Show/hide
Query:  RFEKYTPLSVPPYQVLAAVQNIDLLKRPERLKTNPDRRNKNKYCMFHCDHGHTTRNCIQLRDEIESLINEGYLKEFV-------NDGNNKRPARSER
        +FEKYT  +VP  QVL  ++N  LLK PER+  +  +R+K +YC+FH DHGH T++C  L++E+E LI  GYLKE+V       N  ++K PAR  R
Subjt:  RFEKYTPLSVPPYQVLAAVQNIDLLKRPERLKTNPDRRNKNKYCMFHCDHGHTTRNCIQLRDEIESLINEGYLKEFV-------NDGNNKRPARSER

A0A6J1DDR5 uncharacterized protein LOC1110201151.4e-1633.71Show/hide
Query:  EDLEDLIGQAAP-PYTNDIMEAESDVGSQDRARYSSSRGRADPKEGR-GQDRE--------IGFIACERIMYARESKIAHHLKGRFEKYTPLSVPPYQVL
        E L   +G+ AP  +T  + +A+  +  Q+  R  + R      +GR G+D+E         G  +       R S   H+    +E+YTP ++P  ++L
Subjt:  EDLEDLIGQAAP-PYTNDIMEAESDVGSQDRARYSSSRGRADPKEGR-GQDRE--------IGFIACERIMYARESKIAHHLKGRFEKYTPLSVPPYQVL

Query:  AAVQNID---LLKRPERLKTNPDRRNKNKYCMFHCDHGHTTRNCIQLRDEIESLINEGYLKEFV-NDGNNKRPARSER
          ++  +   LLKRPE+L+ +P++RNK+KYC+FH DHGH+T NC +L+ +IE LI + Y K+FV    +N    + ER
Subjt:  AAVQNID---LLKRPERLKTNPDRRNKNKYCMFHCDHGHTTRNCIQLRDEIESLINEGYLKEFV-NDGNNKRPARSER

A0A6J1DHB3 uncharacterized protein LOC1110204795.4e-1635.51Show/hide
Query:  DRARYSSSRGRADPKEGRGQDREIGFIACERIMYARESKIAHHLKGRFEKYTPLSVPPYQVLAAVQNI---DLLKRPERLKTNPDRRNKNKYCMFHCDHG
        D+ R    +G+AD K      R+ G  +    +  R S  +H+    +E YTP ++P +++L  ++      LLKRPE+L+ +P++RN +KYC FH DHG
Subjt:  DRARYSSSRGRADPKEGRGQDREIGFIACERIMYARESKIAHHLKGRFEKYTPLSVPPYQVLAAVQNI---DLLKRPERLKTNPDRRNKNKYCMFHCDHG

Query:  HTTRNCIQLRDEIESLINEGYLKEFVNDGNNKRPARSE
        H T N  +L+ +IE LI +GY K+FV    +    + E
Subjt:  HTTRNCIQLRDEIESLINEGYLKEFVNDGNNKRPARSE

A0A6J1DWY0 uncharacterized protein LOC1110252931.7e-1741.35Show/hide
Query:  RADPKEGRGQDREIGFIACERIMYARESKIAHHLKGRFEKYTPLSVPPYQVLAAVQNIDLLKRPERLKTNPDRRNKNKYCMFHCDHGHTTRNCIQLRDEI
        R DPK  R  D+  G          R+         +FEKYTP +VP  QVL  +++  LLK PER+K +  +R+K +YC+FH DHGH T++C  L++E+
Subjt:  RADPKEGRGQDREIGFIACERIMYARESKIAHHLKGRFEKYTPLSVPPYQVLAAVQNIDLLKRPERLKTNPDRRNKNKYCMFHCDHGHTTRNCIQLRDEI

Query:  ESLINEGYLKEFV-------NDGNNKRPARSER
        E LI  GYLKE+V       N  ++K PAR  R
Subjt:  ESLINEGYLKEFV-------NDGNNKRPARSER

A0A6J1DZ52 uncharacterized protein LOC1110256129.8e-1847.52Show/hide
Query:  LKGRFEKYTPLSVPPYQVLAAVQNIDLLKRPERLKTNPDRRNKNKYCMFHCDHGHTTRNCIQLRDEIESLINEGYLKEFVND--------GNNKRPARSE
        L  +FEKYTP +VP  QVL  +++  LLK PE +K  P++R+K +YC+FH DHGH T +C  L++E+E LI +GYLKE+V+D         +NK P R  
Subjt:  LKGRFEKYTPLSVPPYQVLAAVQNIDLLKRPERLKTNPDRRNKNKYCMFHCDHGHTTRNCIQLRDEIESLINEGYLKEFVND--------GNNKRPARSE

Query:  R
        R
Subjt:  R

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAGATCTAAGTCTGGCGGACGACTTGGCCCTGAAAAATCCGGATCCAAGCAACAAAAGGGCCCACAGAAGTTTGCTTCCAAGGCCGGTGGCTGATGTGCGTGCCAA
GGTCGGATCTAAGGGAAAGATGAGGGCCCGAATGCAGTCAGGAATTGAGCACGACGATGTCGATCGGGGGCTAAAGTTGCCAAAGTTGAGAAGGGCAGATAAAGAAGACC
TAGAGGACTTGATAGGACAAGCAGCTCCACCGTATACCAATGACATCATGGAAGCAGAGAGTGATGTGGGGAGCCAAGACCGTGCAAGATATTCCTCTAGTCGAGGCCGA
GCAGATCCCAAAGAAGGTCGAGGGCAAGATAGGGAAATTGGGTTTATTGCATGTGAGAGGATTATGTATGCTCGGGAGAGCAAAATCGCACATCACTTAAAAGGAAGATT
TGAGAAGTACACCCCACTGTCCGTCCCGCCTTATCAAGTCTTAGCAGCAGTGCAGAACATAGATCTGTTGAAGCGCCCAGAAAGACTCAAGACTAATCCAGATAGAAGAA
ATAAGAACAAGTATTGCATGTTCCACTGTGATCATGGGCACACAACGCGAAATTGCATACAGTTACGAGATGAGATAGAAAGTTTAATCAATGAGGGTTACCTGAAGGAG
TTTGTTAACGATGGCAACAATAAAAGACCAGCTAGAAGCGAACGAGGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCAGATCTAAGTCTGGCGGACGACTTGGCCCTGAAAAATCCGGATCCAAGCAACAAAAGGGCCCACAGAAGTTTGCTTCCAAGGCCGGTGGCTGATGTGCGTGCCAA
GGTCGGATCTAAGGGAAAGATGAGGGCCCGAATGCAGTCAGGAATTGAGCACGACGATGTCGATCGGGGGCTAAAGTTGCCAAAGTTGAGAAGGGCAGATAAAGAAGACC
TAGAGGACTTGATAGGACAAGCAGCTCCACCGTATACCAATGACATCATGGAAGCAGAGAGTGATGTGGGGAGCCAAGACCGTGCAAGATATTCCTCTAGTCGAGGCCGA
GCAGATCCCAAAGAAGGTCGAGGGCAAGATAGGGAAATTGGGTTTATTGCATGTGAGAGGATTATGTATGCTCGGGAGAGCAAAATCGCACATCACTTAAAAGGAAGATT
TGAGAAGTACACCCCACTGTCCGTCCCGCCTTATCAAGTCTTAGCAGCAGTGCAGAACATAGATCTGTTGAAGCGCCCAGAAAGACTCAAGACTAATCCAGATAGAAGAA
ATAAGAACAAGTATTGCATGTTCCACTGTGATCATGGGCACACAACGCGAAATTGCATACAGTTACGAGATGAGATAGAAAGTTTAATCAATGAGGGTTACCTGAAGGAG
TTTGTTAACGATGGCAACAATAAAAGACCAGCTAGAAGCGAACGAGGCTAA
Protein sequenceShow/hide protein sequence
MPDLSLADDLALKNPDPSNKRAHRSLLPRPVADVRAKVGSKGKMRARMQSGIEHDDVDRGLKLPKLRRADKEDLEDLIGQAAPPYTNDIMEAESDVGSQDRARYSSSRGR
ADPKEGRGQDREIGFIACERIMYARESKIAHHLKGRFEKYTPLSVPPYQVLAAVQNIDLLKRPERLKTNPDRRNKNKYCMFHCDHGHTTRNCIQLRDEIESLINEGYLKE
FVNDGNNKRPARSERG