; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg005035 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005035
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPhotosystem II stability/assembly factor
Genome locationscaffold4:10666172..10667633
RNA-Seq ExpressionSpg005035
SyntenySpg005035
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsIPR028203 - Photosynthesis system II assembly factor Ycf48/Hcf136-like domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0058574.1 photosystem II stability/assembly factor HCF136 [Cucumis melo var. makuwa]2.2e-4986.09Show/hide
Query:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY
        +TILETKDG R WAPRSIPSAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA+YVTSNKGY
Subjt:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY

Query:  NWKGAIYVTSNKGYN
        NWK A+  T +   N
Subjt:  NWKGAIYVTSNKGYN

XP_022953181.1 photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita moschata]1.0e-4986.96Show/hide
Query:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY
        +TILETKDG R WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA+YVTSNKGY
Subjt:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY

Query:  NWKGAIYVTSNKGYN
        NWK A+  T +   N
Subjt:  NWKGAIYVTSNKGYN

XP_022991485.1 photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita maxima]1.0e-4986.96Show/hide
Query:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY
        +TILETKDG R WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA+YVTSNKGY
Subjt:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY

Query:  NWKGAIYVTSNKGYN
        NWK A+  T +   N
Subjt:  NWKGAIYVTSNKGYN

XP_023548135.1 photosystem II stability/assembly factor HCF136, chloroplastic-like [Cucurbita pepo subsp. pepo]2.2e-4986.09Show/hide
Query:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY
        +TILETKDG R WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATG+KSAEMVTDEGA+YVTSNKGY
Subjt:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY

Query:  NWKGAIYVTSNKGYN
        NWK A+  T +   N
Subjt:  NWKGAIYVTSNKGYN

XP_038900067.1 photosystem II stability/assembly factor HCF136, chloroplastic [Benincasa hispida]2.2e-4986.09Show/hide
Query:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY
        +TILETKDG R WAPRSIPSAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA+YVTSNKGY
Subjt:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY

Query:  NWKGAIYVTSNKGYN
        NWK A+  T +   N
Subjt:  NWKGAIYVTSNKGYN

TrEMBL top hitse value%identityAlignment
A0A0A0K5Y1 Photosystem II stability/assembly factor1.1e-4986.09Show/hide
Query:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY
        +TILETKDG R WAPRSIPSAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA+YVTSNKGY
Subjt:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY

Query:  NWKGAIYVTSNKGYN
        NWK A+  T +   N
Subjt:  NWKGAIYVTSNKGYN

A0A1S3CFV0 Photosystem II stability/assembly factor1.1e-4986.09Show/hide
Query:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY
        +TILETKDG R WAPRSIPSAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA+YVTSNKGY
Subjt:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY

Query:  NWKGAIYVTSNKGYN
        NWK A+  T +   N
Subjt:  NWKGAIYVTSNKGYN

A0A5D3CGP8 Photosystem II stability/assembly factor1.1e-4986.09Show/hide
Query:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY
        +TILETKDG R WAPRSIPSAEEEDFNYRFN+ISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA+YVTSNKGY
Subjt:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY

Query:  NWKGAIYVTSNKGYN
        NWK A+  T +   N
Subjt:  NWKGAIYVTSNKGYN

A0A6J1GMA2 Photosystem II stability/assembly factor4.8e-5086.96Show/hide
Query:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY
        +TILETKDG R WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA+YVTSNKGY
Subjt:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY

Query:  NWKGAIYVTSNKGYN
        NWK A+  T +   N
Subjt:  NWKGAIYVTSNKGYN

A0A6J1JT27 Photosystem II stability/assembly factor4.8e-5086.96Show/hide
Query:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY
        +TILETKDG R WAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTS+A ESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGA+YVTSNKGY
Subjt:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY

Query:  NWKGAIYVTSNKGYN
        NWK A+  T +   N
Subjt:  NWKGAIYVTSNKGYN

SwissProt top hitse value%identityAlignment
O82660 Photosystem II stability/assembly factor HCF136, chloroplastic3.7e-4776.52Show/hide
Query:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY
        +T+LETKDG   W PRSIPSAEEEDFNYRFN+ISFKGKEGWI+GKPAILLYT++A E+W+RIPLS+QLPGDMV+IKAT +KSAEMVTDEGA+YVTSN+GY
Subjt:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY

Query:  NWKGAIYVTSNKGYN
        NWK AI  T +   N
Subjt:  NWKGAIYVTSNKGYN

P48325 Photosystem II stability/assembly factor HCF1362.6e-2453.33Show/hide
Query:  TILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYN
        T+ ET D  + W  RS+     ED  YR N+ISF GKEGW+ GKPAILL+T++   SW RIPLS QLPGD   I A G   AE+ TD GA+Y T N G  
Subjt:  TILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYN

Query:  WKGAI
        WK  I
Subjt:  WKGAI

Q5Z5A8 Photosystem II stability/assembly factor HCF136, chloroplastic8.2e-4775.65Show/hide
Query:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY
        +TILETK+G   W PRSIPSAE+EDFNYRFN++SF GKEGWI+GKPAILL+TS+A +SWERIPLSAQLPG+MVYIKATGE+SAEMVTDEGA+YVTSN+GY
Subjt:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY

Query:  NWKGAIYVTSNKGYN
        NWK A+  T +   N
Subjt:  NWKGAIYVTSNKGYN

Q8YQI3 Ycf48-like protein2.6e-2449.52Show/hide
Query:  TILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYN
        T+LET DG   W P ++     +D  YRF+++SF GKEGWIVG+P++LL+T++   SW RIPLS +LPG+ + I+A G   AEM TD GA+Y T++ G N
Subjt:  TILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYN

Query:  WKGAI
        WK  +
Subjt:  WKGAI

Q9AW48 Photosystem II stability/assembly factor HCF136, chloroplastic2.5e-2747.83Show/hide
Query:  TILETKDGERMWAPRSIPSAE-EEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY
        T LET DG   W PR+  + + +E+  YRF  ISF+G+EGW++GKPAI+LYT +  ++W R+P+S +LPG+   IKA G +SAE+ T  GA+YVT+N G 
Subjt:  TILETKDGERMWAPRSIPSAE-EEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY

Query:  NWKGAIYVTSNKGYN
        NWK  +  T +   N
Subjt:  NWKGAIYVTSNKGYN

Arabidopsis top hitse value%identityAlignment
AT5G23120.1 photosystem II stability/assembly factor, chloroplast (HCF136)2.6e-4876.52Show/hide
Query:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY
        +T+LETKDG   W PRSIPSAEEEDFNYRFN+ISFKGKEGWI+GKPAILLYT++A E+W+RIPLS+QLPGDMV+IKAT +KSAEMVTDEGA+YVTSN+GY
Subjt:  KTILETKDGERMWAPRSIPSAEEEDFNYRFNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGY

Query:  NWKGAIYVTSNKGYN
        NWK AI  T +   N
Subjt:  NWKGAIYVTSNKGYN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGACCAGACCTTCGACGGCAGCTTCGACGGCGACCAGACCTCACCGACGGCAGCTTCGAAGGCGACCAGACCTCAACGACGGGAGCTGGATCCTCACCGGCAGCGA
CTGGACGGCTACATTTCAGAACTTCCTTCCCTCACAATCGACGACTGGACGACGATTTGAAGCCCATTTCTTCTACTTCTCTGTCGTTGAGAAAGAAACGCTAAAGAATT
TGGAATTGTTTATGTTTTTCTGGAAAACCATTTTAGAGACAAAAGATGGCGAAAGAATGTGGGCTCCACGTTCAATACCCTCGGCTGAAGAAGAAGACTTTAACTACCGA
TTTAATGCTATTAGCTTCAAAGGGAAGGAGGGATGGATTGTTGGCAAACCTGCGATTCTGTTATACACTTCGAATGCTAGAGAAAGCTGGGAAAGGATACCTCTTAGTGC
TCAGCTTCCTGGAGATATGGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGATGGTTACTGATGAAGGTGCCATGTATGTTACATCAAACAAGGGATATAATTGGA
AGGGTGCCATATATGTTACATCAAACAAGGGATATAATTGGAAGGCTGCAGTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCGACCAGACCTTCGACGGCAGCTTCGACGGCGACCAGACCTCACCGACGGCAGCTTCGAAGGCGACCAGACCTCAACGACGGGAGCTGGATCCTCACCGGCAGCGA
CTGGACGGCTACATTTCAGAACTTCCTTCCCTCACAATCGACGACTGGACGACGATTTGAAGCCCATTTCTTCTACTTCTCTGTCGTTGAGAAAGAAACGCTAAAGAATT
TGGAATTGTTTATGTTTTTCTGGAAAACCATTTTAGAGACAAAAGATGGCGAAAGAATGTGGGCTCCACGTTCAATACCCTCGGCTGAAGAAGAAGACTTTAACTACCGA
TTTAATGCTATTAGCTTCAAAGGGAAGGAGGGATGGATTGTTGGCAAACCTGCGATTCTGTTATACACTTCGAATGCTAGAGAAAGCTGGGAAAGGATACCTCTTAGTGC
TCAGCTTCCTGGAGATATGGTCTACATTAAAGCAACTGGAGAAAAAAGTGCTGAGATGGTTACTGATGAAGGTGCCATGTATGTTACATCAAACAAGGGATATAATTGGA
AGGGTGCCATATATGTTACATCAAACAAGGGATATAATTGGAAGGCTGCAGTTTAG
Protein sequenceShow/hide protein sequence
MATRPSTAASTATRPHRRQLRRRPDLNDGSWILTGSDWTATFQNFLPSQSTTGRRFEAHFFYFSVVEKETLKNLELFMFFWKTILETKDGERMWAPRSIPSAEEEDFNYR
FNAISFKGKEGWIVGKPAILLYTSNARESWERIPLSAQLPGDMVYIKATGEKSAEMVTDEGAMYVTSNKGYNWKGAIYVTSNKGYNWKAAV