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Spg005053 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005053
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionRibonuclease H
Genome locationscaffold11:12145514..12148752
RNA-Seq ExpressionSpg005053
SyntenySpg005053
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033244.1 uncharacterized protein E6C27_scaffold845G00390 [Cucumis melo var. makuwa]4.7e-2141.21Show/hide
Query:  PSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKGSIDQRTFIFRRIRPPVARALVFQRL---------------
        P  S   K +L+EG+ +P SRKGLGYKSPE IRITR+GK KV D NHIT++EV   +EK    QRT  F RI P VARA VF+RL               
Subjt:  PSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKGSIDQRTFIFRRIRPPVARALVFQRL---------------

Query:  -----VFQRLSLTMRRD---------------------------KKEQSTSSIS--HRLRY--EDAMKTKKI---TKANGEIRSAVLSRMKRKTFVTVN
              F+RLS+T +++                           KK++STS +S   R+R+   ++   K+     K   EIRS V SRMKRKTFVT+N
Subjt:  -----VFQRLSLTMRRD---------------------------KKEQSTSSIS--HRLRY--EDAMKTKKI---TKANGEIRSAVLSRMKRKTFVTVN

KAA0062018.1 uncharacterized protein E6C27_scaffold89G003490 [Cucumis melo var. makuwa]2.0e-1939.81Show/hide
Query:  PSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKGSIDQRTFIFRRIRPPVARALVFQRL---------------
        P  S   K +L+EG+ +P SRKGLGYK PE IRITR+GK K+ D+NHI ++EV   +EK    QRT  F RI P VARA VF+RL               
Subjt:  PSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKGSIDQRTFIFRRIRPPVARALVFQRL---------------

Query:  -----VFQRLSLTMRRD---------------------------KKEQSTSSIS--HRLRY--EDAMKTKKI---TKANGEIRSAVLSRMKRKTFVTVNV
              F+RLS+T +++                           KK++STS +S  HR+++   ++   K+     K   EI S V SRMKRKTFVT N 
Subjt:  -----VFQRLSLTMRRD---------------------------KKEQSTSSIS--HRLRY--EDAMKTKKI---TKANGEIRSAVLSRMKRKTFVTVNV

Query:  -DGSLK
          GSLK
Subjt:  -DGSLK

TYK05005.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.8e-2137.94Show/hide
Query:  PQPITLEEYFPRCF-LNDSQGETLETITCHIVDVVEGDDVPSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKG
        PQ  T +E+ P+ + L    G    T T      ++  + P  S   K +L+EG+ +P SRKGLGYK PE IRITR+GK K+ D+NHIT++EV   KEK 
Subjt:  PQPITLEEYFPRCF-LNDSQGETLETITCHIVDVVEGDDVPSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKG

Query:  SIDQRTFIFRRIRPPVARALVFQRL--------------------VFQRLSLTMRRD---------------------------KKEQSTSSIS--HRLR
           QRT  F RI P VARA VF+RL                     F+RLS+T ++                            KK++STS +S  HR++
Subjt:  SIDQRTFIFRRIRPPVARALVFQRL--------------------VFQRLSLTMRRD---------------------------KKEQSTSSIS--HRLR

Query:  Y--EDAMKTKKI---TKANGEIRSAVLSRMKRKTFVTVNV-DGSL--KRRDAI
        +   ++   K+     K   EI S V SRMKRKTFVT+N   GSL  KR D I
Subjt:  Y--EDAMKTKKI---TKANGEIRSAVLSRMKRKTFVTVNV-DGSL--KRRDAI

XP_031739261.1 uncharacterized protein LOC116402916 [Cucumis sativus]9.5e-2240.91Show/hide
Query:  VEGDDVPSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKGSIDQRTFIFRRIRPPVARALVFQRL---------
        +E  D P  S   K +L+EG+++P SRKGLGYKSPE IRIT++GK KV D NHITIEE  ++  K   +QR  +F RIRP VAR +VF+RL         
Subjt:  VEGDDVPSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKGSIDQRTFIFRRIRPPVARALVFQRL---------

Query:  -----------VFQRLSLTMRRD----------------------KKEQSTSSISHRLRYEDA--MKTKKI---TKANGEIRSAVLSRMKRKTFVTVN
                   VF+RL+ T  ++                      K+  S   +  R+++ D    ++KK    TK NGEI S V SRMKRKTFVT+N
Subjt:  -----------VFQRLSLTMRRD----------------------KKEQSTSSISHRLRYEDA--MKTKKI---TKANGEIRSAVLSRMKRKTFVTVN

XP_031742390.1 uncharacterized protein LOC116401672 [Cucumis sativus]3.8e-2344.1Show/hide
Query:  VEGDDVPSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKGSIDQRTFIFRRIRPPVARALVFQRL---------
        +E  D P  S   K +L+EG+++P SRKGLGYKSPE IRIT++GK KV D NHITIEE  ++  K   +QR  +F RIRP VAR +VF+RL         
Subjt:  VEGDDVPSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKGSIDQRTFIFRRIRPPVARALVFQRL---------

Query:  ------VFQRL----------SLTMRRDKKEQSTSSISHRLRYEDA--MKTKKI---TKANGEIRSAVLSRMKRKTFVTVNV-DGSL--KRRDAI
              +F  L          S    + K+  S   +  R+++ D    ++KK    TK NGEI S V SRMKRKTFVT+N   GSL  KR D I
Subjt:  ------VFQRL----------SLTMRRDKKEQSTSSISHRLRYEDA--MKTKKI---TKANGEIRSAVLSRMKRKTFVTVNV-DGSL--KRRDAI

TrEMBL top hitse value%identityAlignment
A0A5A7SPV8 Ribonuclease H2.3e-2141.21Show/hide
Query:  PSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKGSIDQRTFIFRRIRPPVARALVFQRL---------------
        P  S   K +L+EG+ +P SRKGLGYKSPE IRITR+GK KV D NHIT++EV   +EK    QRT  F RI P VARA VF+RL               
Subjt:  PSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKGSIDQRTFIFRRIRPPVARALVFQRL---------------

Query:  -----VFQRLSLTMRRD---------------------------KKEQSTSSIS--HRLRY--EDAMKTKKI---TKANGEIRSAVLSRMKRKTFVTVN
              F+RLS+T +++                           KK++STS +S   R+R+   ++   K+     K   EIRS V SRMKRKTFVT+N
Subjt:  -----VFQRLSLTMRRD---------------------------KKEQSTSSIS--HRLRY--EDAMKTKKI---TKANGEIRSAVLSRMKRKTFVTVN

A0A5A7UMY2 Reverse transcriptase domain-containing protein2.8e-1950.41Show/hide
Query:  PSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKGSIDQRTFIFRRIRPPVARALVFQRLVFQRLSLTMRRDKKE
        P  S   K +L+EG+ +P SRKGLGYKSPE IRITR+GK KV D NHIT++EV   +EK   +QRT  F RI P VARA      VF+RLS+T  + K  
Subjt:  PSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKGSIDQRTFIFRRIRPPVARALVFQRLVFQRLSLTMRRDKKE

Query:  QSTSSISHRLRYEDAMKTKKITK
        QSTS++  R  ++    T K  K
Subjt:  QSTSSISHRLRYEDAMKTKKITK

A0A5A7V356 Uncharacterized protein9.6e-2039.81Show/hide
Query:  PSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKGSIDQRTFIFRRIRPPVARALVFQRL---------------
        P  S   K +L+EG+ +P SRKGLGYK PE IRITR+GK K+ D+NHI ++EV   +EK    QRT  F RI P VARA VF+RL               
Subjt:  PSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKGSIDQRTFIFRRIRPPVARALVFQRL---------------

Query:  -----VFQRLSLTMRRD---------------------------KKEQSTSSIS--HRLRY--EDAMKTKKI---TKANGEIRSAVLSRMKRKTFVTVNV
              F+RLS+T +++                           KK++STS +S  HR+++   ++   K+     K   EI S V SRMKRKTFVT N 
Subjt:  -----VFQRLSLTMRRD---------------------------KKEQSTSSIS--HRLRY--EDAMKTKKI---TKANGEIRSAVLSRMKRKTFVTVNV

Query:  -DGSLK
          GSLK
Subjt:  -DGSLK

A0A5D3C0W6 Ty3-gypsy retrotransposon protein1.3e-2137.94Show/hide
Query:  PQPITLEEYFPRCF-LNDSQGETLETITCHIVDVVEGDDVPSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKG
        PQ  T +E+ P+ + L    G    T T      ++  + P  S   K +L+EG+ +P SRKGLGYK PE IRITR+GK K+ D+NHIT++EV   KEK 
Subjt:  PQPITLEEYFPRCF-LNDSQGETLETITCHIVDVVEGDDVPSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKG

Query:  SIDQRTFIFRRIRPPVARALVFQRL--------------------VFQRLSLTMRRD---------------------------KKEQSTSSIS--HRLR
           QRT  F RI P VARA VF+RL                     F+RLS+T ++                            KK++STS +S  HR++
Subjt:  SIDQRTFIFRRIRPPVARALVFQRL--------------------VFQRLSLTMRRD---------------------------KKEQSTSSIS--HRLR

Query:  Y--EDAMKTKKI---TKANGEIRSAVLSRMKRKTFVTVNV-DGSL--KRRDAI
        +   ++   K+     K   EI S V SRMKRKTFVT+N   GSL  KR D I
Subjt:  Y--EDAMKTKKI---TKANGEIRSAVLSRMKRKTFVTVNV-DGSL--KRRDAI

A0A5D3DXC7 Reverse transcriptase domain-containing protein1.2e-1936.97Show/hide
Query:  PSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKGSIDQRTFIFRRIRPPVARALVFQRL---------------
        P  S   K +L+EG+ +P SRKGLGYKSPE IRITR+GK KV D+NHIT++EV   +EK   +QRT  F RI P VARA VF+RL               
Subjt:  PSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKGSIDQRTFIFRRIRPPVARALVFQRL---------------

Query:  ------------------------------VFQRLSLTMRRD---------------------------KKEQSTSSIS--HRLRY--EDAMKTKKI---
                                       F+RLS+T +++                           KK++STS +   HR+++   ++   K+    
Subjt:  ------------------------------VFQRLSLTMRRD---------------------------KKEQSTSSIS--HRLRY--EDAMKTKKI---

Query:  TKANGEIRSAVLSRMKRKTFVTVNV-DGSL--KRRDAI
         K   EIRS V SRMKRKTFVT+N   GSL  KR D I
Subjt:  TKANGEIRSAVLSRMKRKTFVTVNV-DGSL--KRRDAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCCATTGAAGATGAGAACGAAAGTTGGACCATTGTCGTTCGTCGCAAAAGGCGAAAACAAAGTTACGCACAGAAGGAGTCCCGCCTATTTTGAGATGGTAAAAGA
AAAGTTAAGTCTCAAAGGAAGAAGGGAAAAAAAGAAGACAAGGAGGCCAAAGGTTGTTGTGGAGGAAAGTGAAGATTTCTTTTGTCCTCCACAACCTATCACTTTGGAAG
AATACTTCCCAAGGTGCTTTCTCAATGACAGTCAAGGAGAGACACTAGAAACTATCACGTGTCATATTGTGGACGTGGTGGAAGGTGATGATGTTCCTTCTAGCTCATTG
GGAATGAAAAATATTCTAAAGGAAGGTTATACTCTACCTACATCGAGAAAAGGACTTGGATATAAGTCACCTGAGTCGATTCGCATTACAAGAAGAGGAAAAGCGAAAGT
GGCAGACACAAACCATATAACGATAGAGGAGGTTCATGACTCAAAAGAAAAAGGGAGCATTGACCAACGAACTTTTATTTTTAGGCGCATTAGGCCACCAGTTGCTCGTG
CTTTAGTCTTTCAAAGATTAGTTTTTCAGAGGTTAAGTTTAACCATGAGAAGAGACAAAAAAGAACAGTCTACTTCGTCGATTTCTCACCGACTTCGATATGAAGATGCG
ATGAAAACTAAAAAGATCACGAAGGCTAATGGAGAAATTCGTAGTGCAGTTCTTTCACGAATGAAGAGAAAAACCTTTGTTACTGTCAATGTGGATGGTTCCTTGAAGCG
TCGAGACGCTATAGACAGCGTCGCGACGCTGTCGCGATACTGCGGATTTGGAAAATTCGCCGAGAGCGTCGCGACGCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGATTCCATTGAAGATGAGAACGAAAGTTGGACCATTGTCGTTCGTCGCAAAAGGCGAAAACAAAGTTACGCACAGAAGGAGTCCCGCCTATTTTGAGATGGTAAAAGA
AAAGTTAAGTCTCAAAGGAAGAAGGGAAAAAAAGAAGACAAGGAGGCCAAAGGTTGTTGTGGAGGAAAGTGAAGATTTCTTTTGTCCTCCACAACCTATCACTTTGGAAG
AATACTTCCCAAGGTGCTTTCTCAATGACAGTCAAGGAGAGACACTAGAAACTATCACGTGTCATATTGTGGACGTGGTGGAAGGTGATGATGTTCCTTCTAGCTCATTG
GGAATGAAAAATATTCTAAAGGAAGGTTATACTCTACCTACATCGAGAAAAGGACTTGGATATAAGTCACCTGAGTCGATTCGCATTACAAGAAGAGGAAAAGCGAAAGT
GGCAGACACAAACCATATAACGATAGAGGAGGTTCATGACTCAAAAGAAAAAGGGAGCATTGACCAACGAACTTTTATTTTTAGGCGCATTAGGCCACCAGTTGCTCGTG
CTTTAGTCTTTCAAAGATTAGTTTTTCAGAGGTTAAGTTTAACCATGAGAAGAGACAAAAAAGAACAGTCTACTTCGTCGATTTCTCACCGACTTCGATATGAAGATGCG
ATGAAAACTAAAAAGATCACGAAGGCTAATGGAGAAATTCGTAGTGCAGTTCTTTCACGAATGAAGAGAAAAACCTTTGTTACTGTCAATGTGGATGGTTCCTTGAAGCG
TCGAGACGCTATAGACAGCGTCGCGACGCTGTCGCGATACTGCGGATTTGGAAAATTCGCCGAGAGCGTCGCGACGCTATGA
Protein sequenceShow/hide protein sequence
MIPLKMRTKVGPLSFVAKGENKVTHRRSPAYFEMVKEKLSLKGRREKKKTRRPKVVVEESEDFFCPPQPITLEEYFPRCFLNDSQGETLETITCHIVDVVEGDDVPSSSL
GMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKGSIDQRTFIFRRIRPPVARALVFQRLVFQRLSLTMRRDKKEQSTSSISHRLRYEDA
MKTKKITKANGEIRSAVLSRMKRKTFVTVNVDGSLKRRDAIDSVATLSRYCGFGKFAESVATL