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Spg005066 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005066
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Genome locationscaffold11:11182704..11186546
RNA-Seq ExpressionSpg005066
SyntenySpg005066
Gene Ontology termsGO:0006807 - nitrogen compound metabolic process (biological process)
GO:0043170 - macromolecule metabolic process (biological process)
GO:0044238 - primary metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062407.1 uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa]5.2e-0779.07Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPMPDTLPTSAESSRSSSSSTLQ
        MTEILS RLYGTVCTQV+IELPMPDTLPTSAESS S+ ++ L+
Subjt:  MTEILSPRLYGTVCTQVEIELPMPDTLPTSAESSRSSSSSTLQ

KAA0066851.1 reverse transcriptase [Cucumis melo var. makuwa]5.8e-0661.67Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSSTLQ
        MTEILSPRLYGTVCTQ                 VEIELP+PDTLPTSAESS S+SS+ L+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSSTLQ

TYK11693.1 gag protease polyprotein [Cucumis melo var. makuwa]7.1e-0459.65Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSS
        +TEILS RLYGTVCTQ                 VEIELP+PDTLPTSAESS+S+S S
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSS

TYK27998.1 reverse transcriptase [Cucumis melo var. makuwa]5.8e-0661.67Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSSTLQ
        MTEILSPRLYGTVCTQ                 VEIELP+PDTLPTSAESS S+SS+ L+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSSTLQ

TrEMBL top hitse value%identityAlignment
A0A5A7THH5 Uncharacterized protein1.0e-0356.67Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSSTLQ
        MTEILS RLYGTVCT                  VEIELP+PD LPTSAESS S+SS+ L+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSSTLQ

A0A5A7V638 Uncharacterized protein2.5e-0779.07Show/hide
Query:  MTEILSPRLYGTVCTQVEIELPMPDTLPTSAESSRSSSSSTLQ
        MTEILS RLYGTVCTQV+IELPMPDTLPTSAESS S+ ++ L+
Subjt:  MTEILSPRLYGTVCTQVEIELPMPDTLPTSAESSRSSSSSTLQ

A0A5A7VMG9 Reverse transcriptase2.8e-0661.67Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSSTLQ
        MTEILSPRLYGTVCTQ                 VEIELP+PDTLPTSAESS S+SS+ L+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSSTLQ

A0A5D3CIF4 Gag protease polyprotein3.4e-0459.65Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSS
        +TEILS RLYGTVCTQ                 VEIELP+PDTLPTSAESS+S+S S
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSS

A0A5D3DX39 Reverse transcriptase2.8e-0661.67Show/hide
Query:  MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSSTLQ
        MTEILSPRLYGTVCTQ                 VEIELP+PDTLPTSAESS S+SS+ L+
Subjt:  MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSSTLQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGAGATATTGAGCCCCAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAG
CTCCAGTTCAACGTTACAGGAGGGTCAACGGAGTCCCTCTCAGGCCAATGAGAGGATGGGGCCCTTTGTTCAAGCCTCGGAGTCAGCACTTAAGGGAACAACCTCTCTAC
TGTCCCTGATTCAGGATCACGTTGTTTGCCTCATCCGCAAAGTAGGCCGCATCCATAGTGATACCAGGATAAGGAGAAAAGTGGAGAAATCCGAGAGTAAGCGGCTGCTA
AACACTCCAATCGACCCTCTCTTCCCTTCTAAAACTCTCCACGCTGCTGCCCTAATTGCAGCCATGGTATTTAAAAAGTGGAGAAATCCTAATTTTATCGCGCCTCCGCT
TCCGAGGCATCGAGACGCAGGGAGATGGCGTCTCGACGCCATCTCTCAGTCGAAGCTACCTCAACATGCTGAACTCTTGCCTATACTAGCATGCATGGTGAATCACATGC
ATCAAGCTCAGAATCTAAAGAAAATTCAAGCTCAACTTCACCGACCTCATGATGATTTTCTTCTGATTTACCTTCTTGCTGCTTTGGAATCTAGACTTCTAGCTCATGAA
GAGAGGTGGCTATTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTGAGATATTGAGCCCCAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAG
CTCCAGTTCAACGTTACAGGAGGGTCAACGGAGTCCCTCTCAGGCCAATGAGAGGATGGGGCCCTTTGTTCAAGCCTCGGAGTCAGCACTTAAGGGAACAACCTCTCTAC
TGTCCCTGATTCAGGATCACGTTGTTTGCCTCATCCGCAAAGTAGGCCGCATCCATAGTGATACCAGGATAAGGAGAAAAGTGGAGAAATCCGAGAGTAAGCGGCTGCTA
AACACTCCAATCGACCCTCTCTTCCCTTCTAAAACTCTCCACGCTGCTGCCCTAATTGCAGCCATGGTATTTAAAAAGTGGAGAAATCCTAATTTTATCGCGCCTCCGCT
TCCGAGGCATCGAGACGCAGGGAGATGGCGTCTCGACGCCATCTCTCAGTCGAAGCTACCTCAACATGCTGAACTCTTGCCTATACTAGCATGCATGGTGAATCACATGC
ATCAAGCTCAGAATCTAAAGAAAATTCAAGCTCAACTTCACCGACCTCATGATGATTTTCTTCTGATTTACCTTCTTGCTGCTTTGGAATCTAGACTTCTAGCTCATGAA
GAGAGGTGGCTATTTTAG
Protein sequenceShow/hide protein sequence
MTEILSPRLYGTVCTQVEIELPMPDTLPTSAESSRSSSSSTLQEGQRSPSQANERMGPFVQASESALKGTTSLLSLIQDHVVCLIRKVGRIHSDTRIRRKVEKSESKRLL
NTPIDPLFPSKTLHAAALIAAMVFKKWRNPNFIAPPLPRHRDAGRWRLDAISQSKLPQHAELLPILACMVNHMHQAQNLKKIQAQLHRPHDDFLLIYLLAALESRLLAHE
ERWLF