; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Spg005073 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005073
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold11:11655503..11660176
RNA-Seq ExpressionSpg005073
SyntenySpg005073
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034095.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.0e-3146.63Show/hide
Query:  WCHVKVRPRNKGAYTNDKFLVKYNPLFE------PDSDVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHD
        W  +   P+       +  + +YN L E      P  +++++M+T+  T E+RMAE+++ +N L+KA+EE+D ++A LK+ IE++   ESS T  +KN +
Subjt:  WCHVKVRPRNKGAYTNDKFLVKYNPLFE------PDSDVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHD

Query:  KGKTTVQDDQPQCSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYFKPYTKRIDNLRMPIG
        KGK  +Q+ QPQ S S+ASLS+QQLQ+MI N I+ QYGGP Q   LY KPYTKRIDNLRMP G
Subjt:  KGKTTVQDDQPQCSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYFKPYTKRIDNLRMPIG

KAA0061331.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.9e-4237.46Show/hide
Query:  LVKYNPLF------------EPDSDVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQP-Q
        ++K NPL+            E   DV+  MM    T E  MAEM+  +N L+K +EE+D ++  L+ Q++ +   ESSQT V+K  DKGK  VQD+QP Q
Subjt:  LVKYNPLF------------EPDSDVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQP-Q

Query:  CSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYFKPYTKRIDNLRMPIG-------------------------------------------------
         S SVASLS+QQL DMI N IRAQYGGP+Q S +Y K YTKRIDNLRMP+G                                                 
Subjt:  CSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYFKPYTKRIDNLRMPIG-------------------------------------------------

Query:  ------------------------------------------------------------TSVFDRIKSSTARPSVFQRMSMATTEEENQCVVFTSTRPS
                                                                    TSVFDRIK  T R S+FQR+SMAT +EENQC   T TR S
Subjt:  ------------------------------------------------------------TSVFDRIKSSTARPSVFQRMSMATTEEENQCVVFTSTRPS

Query:  AFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKTDNLDVKLFNEVGSDKKLQSSI
        AF+RLS+S SKK R +TS FDRLK+TN Q +R+  +L  K F+E   D K+ S +
Subjt:  AFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKTDNLDVKLFNEVGSDKKLQSSI

KAA0063700.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.1e-3934.27Show/hide
Query:  DVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQPQCSASVASLSIQQLQDMITNCIRAQY
        +++++M+T+  T E RMAE+++ +N L+K +EE++  +A LK+ I+++   ESS    IKN DKGK  +Q+ QPQ S S+ASLS+QQLQ+MI N I+ QY
Subjt:  DVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQPQCSASVASLSIQQLQDMITNCIRAQY

Query:  GGPTQDSLLYFKPYTKRIDNLRMPIGTS------------------------------------------------------------------------
        GGP Q S LY KPYTK IDNLRMP G                                                                          
Subjt:  GGPTQDSLLYFKPYTKRIDNLRMPIGTS------------------------------------------------------------------------

Query:  ---------------------------------------------------------------VFDRIKSSTARPSVFQRMSMATTEEENQCVVFTSTRP
                                                                       VFDRIKS T R SVFQR+S AT EEENQC   T TR 
Subjt:  ---------------------------------------------------------------VFDRIKSSTARPSVFQRMSMATTEEENQCVVFTSTRP

Query:  SAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKTDNLDVKLFNEVGSDKKLQSSI
        SAF+RLS+STSKK+R ST  FDR+K+TN Q +R+  +L  KLF+E   D  + S +
Subjt:  SAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKTDNLDVKLFNEVGSDKKLQSSI

TYK27123.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]6.1e-3934.27Show/hide
Query:  DVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQPQCSASVASLSIQQLQDMITNCIRAQY
        +++++M+T+  T E RMAE+++ +N L+K +EE++  +A LK+ I+++   ESS    IKN DKGK  +Q+ QPQ S S+ASLS+QQLQ+MI N I+ QY
Subjt:  DVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQPQCSASVASLSIQQLQDMITNCIRAQY

Query:  GGPTQDSLLYFKPYTKRIDNLRMPIGTS------------------------------------------------------------------------
        GGP Q S LY KPYTK IDNLRMP G                                                                          
Subjt:  GGPTQDSLLYFKPYTKRIDNLRMPIGTS------------------------------------------------------------------------

Query:  ---------------------------------------------------------------VFDRIKSSTARPSVFQRMSMATTEEENQCVVFTSTRP
                                                                       VFDRIKS T R SVFQR+S AT EEENQC   T TR 
Subjt:  ---------------------------------------------------------------VFDRIKSSTARPSVFQRMSMATTEEENQCVVFTSTRP

Query:  SAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKTDNLDVKLFNEVGSDKKLQSSI
        SAF+RLS+STSKK+R ST  FDR+K+TN Q +R+  +L  KLF+E   D  + S +
Subjt:  SAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKTDNLDVKLFNEVGSDKKLQSSI

XP_031742199.1 uncharacterized protein LOC105435721 [Cucumis sativus]1.0e-3053.64Show/hide
Query:  LVKYNPLF------------EPDSDVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQP-Q
        ++K NPL+            E   DV+++MM +   +E  MAEM+  IN L+K ++E+D ++A LK Q++ +   ESSQT V+K  DKGK  VQ++QP Q
Subjt:  LVKYNPLF------------EPDSDVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQP-Q

Query:  CSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYFKPYTKRIDNLRMPIG
         S SVASLS+QQLQDMITN IRAQYGGP+Q S +Y KPYTKRIDNLRMP+G
Subjt:  CSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYFKPYTKRIDNLRMPIG

TrEMBL top hitse value%identityAlignment
A0A5A7SY17 Ty3-gypsy retrotransposon protein3.9e-3146.63Show/hide
Query:  WCHVKVRPRNKGAYTNDKFLVKYNPLFE------PDSDVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHD
        W  +   P+       +  + +YN L E      P  +++++M+T+  T E+RMAE+++ +N L+KA+EE+D ++A LK+ IE++   ESS T  +KN +
Subjt:  WCHVKVRPRNKGAYTNDKFLVKYNPLFE------PDSDVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHD

Query:  KGKTTVQDDQPQCSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYFKPYTKRIDNLRMPIG
        KGK  +Q+ QPQ S S+ASLS+QQLQ+MI N I+ QYGGP Q   LY KPYTKRIDNLRMP G
Subjt:  KGKTTVQDDQPQCSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYFKPYTKRIDNLRMPIG

A0A5A7U5H1 Ty3-gypsy retrotransposon protein5.1e-3146.63Show/hide
Query:  WCHVKVRPRNKGAYTNDKFLVKYNPLFE------PDSDVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHD
        W  +   P+       +  + ++N L E      P  +++++M+T+  T E+RMAE+++ +N L+KA+EEKD ++A LK+ IE++   ESS T  IKN +
Subjt:  WCHVKVRPRNKGAYTNDKFLVKYNPLFE------PDSDVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHD

Query:  KGKTTVQDDQPQCSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYFKPYTKRIDNLRMPIG
        KGK  +Q+ QPQ S S+ASLS+QQLQ+MI N I+ QYGGP Q   LY KPYTKRIDN+RMP G
Subjt:  KGKTTVQDDQPQCSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYFKPYTKRIDNLRMPIG

A0A5A7V6H5 Ty3-gypsy retrotransposon protein2.9e-4237.46Show/hide
Query:  LVKYNPLF------------EPDSDVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQP-Q
        ++K NPL+            E   DV+  MM    T E  MAEM+  +N L+K +EE+D ++  L+ Q++ +   ESSQT V+K  DKGK  VQD+QP Q
Subjt:  LVKYNPLF------------EPDSDVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQP-Q

Query:  CSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYFKPYTKRIDNLRMPIG-------------------------------------------------
         S SVASLS+QQL DMI N IRAQYGGP+Q S +Y K YTKRIDNLRMP+G                                                 
Subjt:  CSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYFKPYTKRIDNLRMPIG-------------------------------------------------

Query:  ------------------------------------------------------------TSVFDRIKSSTARPSVFQRMSMATTEEENQCVVFTSTRPS
                                                                    TSVFDRIK  T R S+FQR+SMAT +EENQC   T TR S
Subjt:  ------------------------------------------------------------TSVFDRIKSSTARPSVFQRMSMATTEEENQCVVFTSTRPS

Query:  AFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKTDNLDVKLFNEVGSDKKLQSSI
        AF+RLS+S SKK R +TS FDRLK+TN Q +R+  +L  K F+E   D K+ S +
Subjt:  AFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKTDNLDVKLFNEVGSDKKLQSSI

A0A5A7V935 Ty3-gypsy retrotransposon protein3.0e-3934.27Show/hide
Query:  DVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQPQCSASVASLSIQQLQDMITNCIRAQY
        +++++M+T+  T E RMAE+++ +N L+K +EE++  +A LK+ I+++   ESS    IKN DKGK  +Q+ QPQ S S+ASLS+QQLQ+MI N I+ QY
Subjt:  DVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQPQCSASVASLSIQQLQDMITNCIRAQY

Query:  GGPTQDSLLYFKPYTKRIDNLRMPIGTS------------------------------------------------------------------------
        GGP Q S LY KPYTK IDNLRMP G                                                                          
Subjt:  GGPTQDSLLYFKPYTKRIDNLRMPIGTS------------------------------------------------------------------------

Query:  ---------------------------------------------------------------VFDRIKSSTARPSVFQRMSMATTEEENQCVVFTSTRP
                                                                       VFDRIKS T R SVFQR+S AT EEENQC   T TR 
Subjt:  ---------------------------------------------------------------VFDRIKSSTARPSVFQRMSMATTEEENQCVVFTSTRP

Query:  SAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKTDNLDVKLFNEVGSDKKLQSSI
        SAF+RLS+STSKK+R ST  FDR+K+TN Q +R+  +L  KLF+E   D  + S +
Subjt:  SAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKTDNLDVKLFNEVGSDKKLQSSI

A0A5D3DU03 Ty3-gypsy retrotransposon protein3.0e-3934.27Show/hide
Query:  DVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQPQCSASVASLSIQQLQDMITNCIRAQY
        +++++M+T+  T E RMAE+++ +N L+K +EE++  +A LK+ I+++   ESS    IKN DKGK  +Q+ QPQ S S+ASLS+QQLQ+MI N I+ QY
Subjt:  DVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQPQCSASVASLSIQQLQDMITNCIRAQY

Query:  GGPTQDSLLYFKPYTKRIDNLRMPIGTS------------------------------------------------------------------------
        GGP Q S LY KPYTK IDNLRMP G                                                                          
Subjt:  GGPTQDSLLYFKPYTKRIDNLRMPIGTS------------------------------------------------------------------------

Query:  ---------------------------------------------------------------VFDRIKSSTARPSVFQRMSMATTEEENQCVVFTSTRP
                                                                       VFDRIKS T R SVFQR+S AT EEENQC   T TR 
Subjt:  ---------------------------------------------------------------VFDRIKSSTARPSVFQRMSMATTEEENQCVVFTSTRP

Query:  SAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKTDNLDVKLFNEVGSDKKLQSSI
        SAF+RLS+STSKK+R ST  FDR+K+TN Q +R+  +L  KLF+E   D  + S +
Subjt:  SAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKTDNLDVKLFNEVGSDKKLQSSI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTGGGCCAAAACCAAAGTGATCGGGCTTTTGGCCCAACCCCCTACTCAGCCTCGGCCAAGGCCGAGCTCGTCCGACTCCATTTTTCCCCTACTGCCCTTGACCAC
CACGGCTCGACCTGGTTCATCCCGAAACGCCTCCGAACGCCAAGTAAACCCTAACGAAAGACACAGGTGGCCTACACCACACCGGTGTGCAGTGCTTCTGACTGGTCTCG
CAGGTCGTCATCCCCGTCTTCAACAAATTCACTGCTGGTGTCACGTGAAGGTCAGGCCAAGAAACAAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCT
TTGTTTGAACCTGATTCTGACGTAGTGACTATCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACACCTTGATAAAGGCGAT
TGAAGAAAAAGATTCTCAACTCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCACCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTA
CAGTGCAAGATGATCAGCCACAGTGTTCTGCTTCGGTCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACT
CAAGATTCCCTCTTGTATTTCAAACCTTATACTAAGAGGATTGATAACTTGAGAATGCCAATCGGGACTTCCGTCTTCGATCGCATTAAGTCTTCAACTGCTCGACCTTC
GGTATTCCAAAGAATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTGTGGTGTTCACCTCCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGA
AAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCGAAGAAAGACAGATAACTTAGATGTGAAATTGTTCAATGAAGTAGGCAGTGAC
AAGAAGCTTCAAAGTAGCATCCTGTTCTCACGCTGCGCTGCTTTGCTATTCCTTCTCCAAGTTCGAAGCTTCTCACGATGCGCTGCTTCCTTCTCCAAGTTCGAAGGTTC
TCATGCTACTCTAGGCTGCGCTACTACGTTACTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGTTTCCTTCTCCAAGTTTGAAGGTTCTGACGCTG
CGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTTCGTTGTTCCTTCTCCAAGTTCAAAGGTCCTCATGCGCTATGCTACTGTTCCTTCTCCAAGTTCG
AAGGTTTTCACGTGTTCTCATGTTGTTACGCTACAGCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTTGGGCCAAAACCAAAGTGATCGGGCTTTTGGCCCAACCCCCTACTCAGCCTCGGCCAAGGCCGAGCTCGTCCGACTCCATTTTTCCCCTACTGCCCTTGACCAC
CACGGCTCGACCTGGTTCATCCCGAAACGCCTCCGAACGCCAAGTAAACCCTAACGAAAGACACAGGTGGCCTACACCACACCGGTGTGCAGTGCTTCTGACTGGTCTCG
CAGGTCGTCATCCCCGTCTTCAACAAATTCACTGCTGGTGTCACGTGAAGGTCAGGCCAAGAAACAAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCT
TTGTTTGAACCTGATTCTGACGTAGTGACTATCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACACCTTGATAAAGGCGAT
TGAAGAAAAAGATTCTCAACTCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCACCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTA
CAGTGCAAGATGATCAGCCACAGTGTTCTGCTTCGGTCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACT
CAAGATTCCCTCTTGTATTTCAAACCTTATACTAAGAGGATTGATAACTTGAGAATGCCAATCGGGACTTCCGTCTTCGATCGCATTAAGTCTTCAACTGCTCGACCTTC
GGTATTCCAAAGAATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTGTGGTGTTCACCTCCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGA
AAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCGAAGAAAGACAGATAACTTAGATGTGAAATTGTTCAATGAAGTAGGCAGTGAC
AAGAAGCTTCAAAGTAGCATCCTGTTCTCACGCTGCGCTGCTTTGCTATTCCTTCTCCAAGTTCGAAGCTTCTCACGATGCGCTGCTTCCTTCTCCAAGTTCGAAGGTTC
TCATGCTACTCTAGGCTGCGCTACTACGTTACTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGTTTCCTTCTCCAAGTTTGAAGGTTCTGACGCTG
CGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTTCGTTGTTCCTTCTCCAAGTTCAAAGGTCCTCATGCGCTATGCTACTGTTCCTTCTCCAAGTTCG
AAGGTTTTCACGTGTTCTCATGTTGTTACGCTACAGCTCTAG
Protein sequenceShow/hide protein sequence
MGWAKTKVIGLLAQPPTQPRPRPSSSDSIFPLLPLTTTARPGSSRNASERQVNPNERHRWPTPHRCAVLLTGLAGRHPRLQQIHCWCHVKVRPRNKGAYTNDKFLVKYNP
LFEPDSDVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQPQCSASVASLSIQQLQDMITNCIRAQYGGPT
QDSLLYFKPYTKRIDNLRMPIGTSVFDRIKSSTARPSVFQRMSMATTEEENQCVVFTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKTDNLDVKLFNEVGSD
KKLQSSILFSRCAALLFLLQVRSFSRCAASFSKFEGSHATLGCATTLLPSLSLKVPTLRCCAVSFSKFEGSDAALLPSPSSKVLTLRCFVVPSPSSKVLMRYATVPSPSS
KVFTCSHVVTLQL