CuGenDBv2

Gene ID	Spg005080
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Polynucleotide phosphorylase 1
Genome location	scaffold11:12133510..12137125
RNA-Seq Expression	Spg005080
Synteny	Spg005080
Gene Ontology terms	GO:0000958 - mitochondrial mRNA catabolic process (biological process) GO:0000965 - mitochondrial RNA 3'-end processing (biological process) GO:0090503 - RNA phosphodiester bond hydrolysis, exonucleolytic (biological process) GO:0005739 - mitochondrion (cellular component) GO:0005829 - cytosol (cellular component) GO:0000175 - 3'-5'-exoribonuclease activity (molecular function) GO:0003723 - RNA binding (molecular function) GO:0004654 - polyribonucleotide nucleotidyltransferase activity (molecular function)
InterPro domains	IPR003029 - S1 domain IPR012162 - Polyribonucleotide nucleotidyltransferase IPR012340 - Nucleic acid-binding, OB-fold

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0053844.1 putative polyribonucleotide nucleotidyltransferase 1 [Cucumis melo var. makuwa]

2.3e-47

81.62

Show/hide

Query:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNK----------TSKKAGKENMEQNNVQKGVAAPI
        GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDS+SKENT +PSRNK          TSKKAGKEN+EQ NVQKG  AP+
Subjt:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNK----------TSKKAGKENMEQNNVQKGVAAPI

Query:  GRSLEDAAKLQKKFIRKEVSATKDRPISKEKSKSTS
        G SLEDAAKLQKKFIRK V+ATK+RPISKE+++STS
Subjt:  GRSLEDAAKLQKKFIRKEVSATKDRPISKEKSKSTS

TYK25556.1 putative polyribonucleotide nucleotidyltransferase 1 [Cucumis melo var. makuwa]

2.3e-47

81.62

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Query:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNK----------TSKKAGKENMEQNNVQKGVAAPI
        GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDS+SKENT +PSRNK          TSKKAGKEN+EQ NVQKG  AP+
Subjt:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNK----------TSKKAGKENMEQNNVQKGVAAPI

Query:  GRSLEDAAKLQKKFIRKEVSATKDRPISKEKSKSTS
        G SLEDAAKLQKKFIRK V+ATK+RPISKE+++STS
Subjt:  GRSLEDAAKLQKKFIRKEVSATKDRPISKEKSKSTS

XP_008443302.1 PREDICTED: probable polyribonucleotide nucleotidyltransferase 1, chloroplastic [Cucumis melo]

1.0e-47

81.75

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Query:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNK----------TSKKAGKENMEQNNVQKGVAAPI
        GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDS+SKENT +PSRNK          TSKKAGKEN+EQ NVQKG  AP+
Subjt:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNK----------TSKKAGKENMEQNNVQKGVAAPI

Query:  GRSLEDAAKLQKKFIRKEVSATKDRPISKEKSKSTSS
        G SLEDAAKLQKKFIRK V+ATK+RPISKE+++STSS
Subjt:  GRSLEDAAKLQKKFIRKEVSATKDRPISKEKSKSTSS

XP_022983703.1 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic [Cucurbita maxima]

2.3e-47

81.02

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Query:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNK----------TSKKAGKENMEQNNVQKGVAAPI
        GLCHISELSSDWLAKAED  KVGDKIDVK+IEVNEKGQLRLSRRALLP+AD+DSSSK+NTG+PSRNK          TSK AGKENMEQ+NVQKGV API
Subjt:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNK----------TSKKAGKENMEQNNVQKGVAAPI

Query:  GRSLEDAAKLQKKFIRKEVSATKDRPISKEKSKSTSS
        G S EDAAKLQKKFIRKE +ATKDRPI+KEK+KSTSS
Subjt:  GRSLEDAAKLQKKFIRKEVSATKDRPISKEKSKSTSS

XP_038904843.1 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic [Benincasa hispida]

4.9e-50

84.67

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Query:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNKTS----------KKAGKENMEQNNVQKGVAAPI
        GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTG+PSRNKT+          KKAGKENMEQ NVQKG AAPI
Subjt:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNKTS----------KKAGKENMEQNNVQKGVAAPI

Query:  GRSLEDAAKLQKKFIRKEVSATKDRPISKEKSKSTSS
        G SLEDAAKLQKKFIRK V+ATK+RP+SKE++KSTSS
Subjt:  GRSLEDAAKLQKKFIRKEVSATKDRPISKEKSKSTSS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LHJ6 Polynucleotide phosphorylase 1

7.1e-47

80.88

Show/hide

Query:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNK----------TSKKAGKENMEQNNVQKGVAAPI
        GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDS+SKENT +PSRNK          TSKKAGKEN+E+ NVQKG AAP 
Subjt:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNK----------TSKKAGKENMEQNNVQKGVAAPI

Query:  GRSLEDAAKLQKKFIRKEVSATKDRPISKEKSKSTS
          SLEDAAKLQKKFIRK V+ TK+RPISKE++KSTS
Subjt:  GRSLEDAAKLQKKFIRKEVSATKDRPISKEKSKSTS

A0A1S3B784 Polynucleotide phosphorylase 1

4.9e-48

81.75

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Query:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNK----------TSKKAGKENMEQNNVQKGVAAPI
        GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDS+SKENT +PSRNK          TSKKAGKEN+EQ NVQKG  AP+
Subjt:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNK----------TSKKAGKENMEQNNVQKGVAAPI

Query:  GRSLEDAAKLQKKFIRKEVSATKDRPISKEKSKSTSS
        G SLEDAAKLQKKFIRK V+ATK+RPISKE+++STSS
Subjt:  GRSLEDAAKLQKKFIRKEVSATKDRPISKEKSKSTSS

A0A5A7UF08 Polynucleotide phosphorylase 1

1.1e-47

81.62

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Query:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNK----------TSKKAGKENMEQNNVQKGVAAPI
        GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDS+SKENT +PSRNK          TSKKAGKEN+EQ NVQKG  AP+
Subjt:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNK----------TSKKAGKENMEQNNVQKGVAAPI

Query:  GRSLEDAAKLQKKFIRKEVSATKDRPISKEKSKSTS
        G SLEDAAKLQKKFIRK V+ATK+RPISKE+++STS
Subjt:  GRSLEDAAKLQKKFIRKEVSATKDRPISKEKSKSTS

A0A5D3DPG4 Polynucleotide phosphorylase 1

1.1e-47

81.62

Show/hide

Query:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNK----------TSKKAGKENMEQNNVQKGVAAPI
        GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDS+SKENT +PSRNK          TSKKAGKEN+EQ NVQKG  AP+
Subjt:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNK----------TSKKAGKENMEQNNVQKGVAAPI

Query:  GRSLEDAAKLQKKFIRKEVSATKDRPISKEKSKSTS
        G SLEDAAKLQKKFIRK V+ATK+RPISKE+++STS
Subjt:  GRSLEDAAKLQKKFIRKEVSATKDRPISKEKSKSTS

A0A6J1J8H1 Polynucleotide phosphorylase 1

1.1e-47

81.02

Show/hide

Query:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNK----------TSKKAGKENMEQNNVQKGVAAPI
        GLCHISELSSDWLAKAED  KVGDKIDVK+IEVNEKGQLRLSRRALLP+AD+DSSSK+NTG+PSRNK          TSK AGKENMEQ+NVQKGV API
Subjt:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNK----------TSKKAGKENMEQNNVQKGVAAPI

Query:  GRSLEDAAKLQKKFIRKEVSATKDRPISKEKSKSTSS
        G S EDAAKLQKKFIRKE +ATKDRPI+KEK+KSTSS
Subjt:  GRSLEDAAKLQKKFIRKEVSATKDRPISKEKSKSTSS

SwissProt top hits

e value

%identity

Alignment

B0B971 Polyribonucleotide nucleotidyltransferase

6.2e-08

57.14

Show/hide

Query:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPD
        GLCHISELS   +    D  K GDK+ VKL+ +NEKGQL+LS +A L D
Subjt:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPD

B0BAV0 Polyribonucleotide nucleotidyltransferase

6.2e-08

57.14

Show/hide

Query:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPD
        GLCHISELS   +    D  K GDK+ VKL+ +NEKGQL+LS +A L D
Subjt:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPD

Q3KKJ7 Polyribonucleotide nucleotidyltransferase

6.2e-08

57.14

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Query:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPD
        GLCHISELS   +    D  K GDK+ VKL+ +NEKGQL+LS +A L D
Subjt:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPD

Q69LE7 Probable polyribonucleotide nucleotidyltransferase 1, chloroplastic

5.3e-23

76.06

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Query:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNKTSKK
        GLCHISELSS WLAKAEDAFKVGD+IDVKLIE+N+KGQLRLS RALLPDA+Q+SSSK+  G  +R K  +K
Subjt:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNKTSKK

Q8GZQ3 Polyribonucleotide nucleotidyltransferase 1, chloroplastic

2.7e-19

44.96

Show/hide

Query:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDA--DQDSSSKENTGSPSRNKTSKKAGKENMEQNNVQKGVAAPIGRSLEDAA
        GLCHISELS++WLAK EDA+KVGD+IDVKLIEVNEKGQLRLS RALLP++  D+DS  ++  G  +++K+S+   ++ +  ++  +  A     S  D  
Subjt:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDA--DQDSSSKENTGSPSRNKTSKKAGKENMEQNNVQKGVAAPIGRSLEDAA

Query:  KLQKKFIRKEVSATKDRPISKEKSKSTSS
         L+KK +R+    + D+ ++   S +  S
Subjt:  KLQKKFIRKEVSATKDRPISKEKSKSTSS

Arabidopsis top hits

e value

%identity

Alignment

AT3G03710.1 polyribonucleotide nucleotidyltransferase, putative

1.9e-20

44.96

Show/hide

Query:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDA--DQDSSSKENTGSPSRNKTSKKAGKENMEQNNVQKGVAAPIGRSLEDAA
        GLCHISELS++WLAK EDA+KVGD+IDVKLIEVNEKGQLRLS RALLP++  D+DS  ++  G  +++K+S+   ++ +  ++  +  A     S  D  
Subjt:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDA--DQDSSSKENTGSPSRNKTSKKAGKENMEQNNVQKGVAAPIGRSLEDAA

Query:  KLQKKFIRKEVSATKDRPISKEKSKSTSS
         L+KK +R+    + D+ ++   S +  S
Subjt:  KLQKKFIRKEVSATKDRPISKEKSKSTSS

AT5G14580.1 polyribonucleotide nucleotidyltransferase, putative

3.9e-05

38.24

Show/hide

Query:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLP--------DADQDSSSKENT
        GL H+SELS + ++K  D   +G  I    IE + +G ++LSR+ALLP        DA +D   KE++
Subjt:  GLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLP--------DADQDSSSKENT

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGACTTTGCCATATTAGTGAGTTGAGCTCAGATTGGTTGGCAAAGGCAGAAGATGCTTTTAAAGTTGGAGATAAAATCGATGTCAAGCTCATTGAGGTAAATGAAAA
GGGCCAGCTCCGCCTTAGCCGTCGTGCATTGCTTCCAGATGCTGATCAGGATTCCAGTTCAAAGGAGAATACAGGCAGCCCCTCCAGAAACAAGACTTCTAAGAAAGCTG
GTAAGGAGAACATGGAACAAAATAATGTGCAGAAAGGTGTTGCTGCACCAATTGGTAGGTCATTGGAGGACGCTGCAAAACTGCAGAAGAAATTTATACGGAAAGAAGTA
AGTGCGACCAAAGACAGACCTATAAGCAAAGAAAAGTCAAAAAGCACAAGCAGTTGA

mRNA sequence

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Protein sequence

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MGLCHISELSSDWLAKAEDAFKVGDKIDVKLIEVNEKGQLRLSRRALLPDADQDSSSKENTGSPSRNKTSKKAGKENMEQNNVQKGVAAPIGRSLEDAAKLQKKFIRKEV
SATKDRPISKEKSKSTSS

Spg005080 (gene) of Sponge gourd (cylindrica) v1 genome