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Spg005082 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005082
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Genome locationscaffold11:12005298..12007821
RNA-Seq ExpressionSpg005082
SyntenySpg005082
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016740 - transferase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025357.1 hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa]3.1e-1662.5Show/hide
Query:  LFGLSYTEGIKRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        LFGLSY EG KRP+G+R SLQTGELDKT                 VEIELPVPDTLPTSAES R++S+TW+ELY ES+H+
Subjt:  LFGLSYTEGIKRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

KAA0040420.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa]2.1e-1776.19Show/hide
Query:  LFGLSYTEGIKRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        LF LSY EG KRPRG+R SLQTG+LDKTVEIELP+PDTLPT AES  ++SSTW+ELY ESVH+
Subjt:  LFGLSYTEGIKRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

KAA0051980.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.4e-1562.5Show/hide
Query:  LFGLSYTEGIKRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        LFGL Y EG KRPRG+R+SLQTGELDKT                 VEIELPVPDTLPTSAESS ++SSTW+EL  E VH+
Subjt:  LFGLSYTEGIKRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

KAA0052218.1 uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa]2.8e-1753.33Show/hide
Query:  KAHAKPAIAGSEINLSTSGFLFGLSYTEGIK----------------------RPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYI
        K +AKPAIA S  N      LFGLSY E ++                       PRG+R +L TG+LDKTVEIELPVPDTLPTSAESS+++SSTW+ELY 
Subjt:  KAHAKPAIAGSEINLSTSGFLFGLSYTEGIK----------------------RPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYI

Query:  ESVHI
        ESVH+
Subjt:  ESVHI

KAA0062263.1 hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]8.4e-1466.67Show/hide
Query:  LSYTEGIKRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        +S  E ++ PRG+R SLQ G+L+KTVEIELP+PDTLPTS+ESS+++SSTW+ELY ESVH+
Subjt:  LSYTEGIKRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

TrEMBL top hitse value%identityAlignment
A0A5A7TAS6 NBS-LRR type resistance protein1.0e-1776.19Show/hide
Query:  LFGLSYTEGIKRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        LF LSY EG KRPRG+R SLQTG+LDKTVEIELP+PDTLPT AES  ++SSTW+ELY ESVH+
Subjt:  LFGLSYTEGIKRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

A0A5A7U9X4 DNA/RNA polymerases superfamily protein2.1e-1562.5Show/hide
Query:  LFGLSYTEGIKRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        LFGL Y EG KRPRG+R+SLQTGELDKT                 VEIELPVPDTLPTSAESS ++SSTW+EL  E VH+
Subjt:  LFGLSYTEGIKRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

A0A5A7UAH6 CCHC-type domain-containing protein1.3e-1753.33Show/hide
Query:  KAHAKPAIAGSEINLSTSGFLFGLSYTEGIK----------------------RPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYI
        K +AKPAIA S  N      LFGLSY E ++                       PRG+R +L TG+LDKTVEIELPVPDTLPTSAESS+++SSTW+ELY 
Subjt:  KAHAKPAIAGSEINLSTSGFLFGLSYTEGIK----------------------RPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYI

Query:  ESVHI
        ESVH+
Subjt:  ESVHI

A0A5A7V2F2 Uncharacterized protein4.0e-1466.67Show/hide
Query:  LSYTEGIKRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        +S  E ++ PRG+R SLQ G+L+KTVEIELP+PDTLPTS+ESS+++SSTW+ELY ESVH+
Subjt:  LSYTEGIKRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

A0A5D3DIM8 Uncharacterized protein1.5e-1662.5Show/hide
Query:  LFGLSYTEGIKRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI
        LFGLSY EG KRP+G+R SLQTGELDKT                 VEIELPVPDTLPTSAES R++S+TW+ELY ES+H+
Subjt:  LFGLSYTEGIKRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACCCGCAACGGACTCGGACTTTTCTGTTTCTGCCCAGAAATGCGATCGCATTTCATTTTGCCTTGGCAGAAATGGGGTCGTATTTCATTTGCCTTGGCAAAGTGCGG
TCGCATTTCATTTGCCTTGGCAAAATGCGATCGCATTTCAATAGCATTTCAACAACATTTCTCTGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACC
TGTCAACCTCTGGTTTCTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAGTAGGTCGAGTCTACAAACAGGGGAACTAGATAAGACTGTAGAGATC
GAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTCTAAATGTTTTGTA
A
mRNA sequenceShow/hide mRNA sequence
ATGACCCGCAACGGACTCGGACTTTTCTGTTTCTGCCCAGAAATGCGATCGCATTTCATTTTGCCTTGGCAGAAATGGGGTCGTATTTCATTTGCCTTGGCAAAGTGCGG
TCGCATTTCATTTGCCTTGGCAAAATGCGATCGCATTTCAATAGCATTTCAACAACATTTCTCTGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACC
TGTCAACCTCTGGTTTCTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAGTAGGTCGAGTCTACAAACAGGGGAACTAGATAAGACTGTAGAGATC
GAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTCTAAATGTTTTGTA
A
Protein sequenceShow/hide protein sequence
MTRNGLGLFCFCPEMRSHFILPWQKWGRISFALAKCGRISFALAKCDRISIAFQQHFSGKAHAKPAIAGSEINLSTSGFLFGLSYTEGIKRPRGSRSSLQTGELDKTVEI
ELPVPDTLPTSAESSRTSSSTWVELYIESVHILNVL