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Spg005094 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005094
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionDNA-directed RNA polymerase V subunit 5C-like
Genome locationscaffold11:11926667..11928032
RNA-Seq ExpressionSpg005094
SyntenySpg005094
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8657620.1 Detected protein of unknown function [Hibiscus syriacus]2.2e-1133.06Show/hide
Query:  DDDFLSAVLLAVARPGAKWDGHGPTR-TLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPIDLGQILVETVSQTTTKPKGAMFCPG
        D +    VL  +     +W+G   +R ++  + L   A  W H++K+++MPT+H+ T+SL  L+L++ IMK   ID+G+I+V+ V+    K   A+  P 
Subjt:  DDDFLSAVLLAVARPGAKWDGHGPTR-TLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPIDLGQILVETVSQTTTKPKGAMFCPG

Query:  LVTRLCRASSLVPVADEEIRP
        L+T LCR   +     +EI P
Subjt:  LVTRLCRASSLVPVADEEIRP

KAE8676815.1 hypothetical protein F3Y22_tig00111582pilonHSYRG01273 [Hibiscus syriacus]4.4e-1237.5Show/hide
Query:  KWDGHGPTR-TLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPIDLGQILVETVSQTTTKPKGAMFCPGLVTRLCRASSLVPVADE
        +W+G   +R ++  + L   A  W H++K+++MPT+H+ T+SL RL+L++ IM   PID+G+I+V+ V    +K   A+  P L+T LCR   +   A +
Subjt:  KWDGHGPTR-TLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPIDLGQILVETVSQTTTKPKGAMFCPGLVTRLCRASSLVPVADE

Query:  EIRP
        EI P
Subjt:  EIRP

KAE8680640.1 hypothetical protein F3Y22_tig00111372pilonHSYRG00020 [Hibiscus syriacus]2.2e-1133.06Show/hide
Query:  DDDFLSAVLLAVARPGAKWDGHGPTR-TLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPIDLGQILVETVSQTTTKPKGAMFCPG
        D +    VL  +     +W+G   +R ++  + L   A  W H++K+++MPT+++ T+SL RL+L++ I +  PID+G+I+V+ V+    K   A+  P 
Subjt:  DDDFLSAVLLAVARPGAKWDGHGPTR-TLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPIDLGQILVETVSQTTTKPKGAMFCPG

Query:  LVTRLCRASSLVPVADEEIRP
        L+T LCR   +   A +EI P
Subjt:  LVTRLCRASSLVPVADEEIRP

MCH80834.1 hypothetical protein [Trifolium medium]1.5e-1230.3Show/hide
Query:  LLNCLDDDFLSAVLLAVARPGAKWDGHGPTR--TLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPIDLGQILVETVSQTTTKPKG
        L++ + D+ L+AV+  +  PG +W          +K   L  E   W   +K+ I+PTTH+ T++  R++L++CIM+  PI++G+I+ + +   +T+ +G
Subjt:  LLNCLDDDFLSAVLLAVARPGAKWDGHGPTR--TLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPIDLGQILVETVSQTTTKPKG

Query:  AMFCPGLVTRLCRASSLVPVADEEIRPMRKDF
         ++ P L+T LC+A  +   A +E  P  + F
Subjt:  AMFCPGLVTRLCRASSLVPVADEEIRPMRKDF

XP_024995361.1 formin-like protein 3 [Cynara cardunculus var. scolymus]7.5e-1229.23Show/hide
Query:  CLDDDFLSAVLLAVARPGAKWDGHGPTRTLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPIDLGQILVETVSQTTTKPKGAMFCP
        C D++ L  +L  VA  G  W   G  R LK+Q L  EA+ W +++++ I P +HD  L L+R++++YCI++  P D+G+++   +     +  G +  P
Subjt:  CLDDDFLSAVLLAVARPGAKWDGHGPTRTLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPIDLGQILVETVSQTTTKPKGAMFCP

Query:  GLVTRLCRASSLVPVADEEIRPMRKDFDDQ
         L+ RL + + ++ +  +++  M K   D+
Subjt:  GLVTRLCRASSLVPVADEEIRPMRKDFDDQ

TrEMBL top hitse value%identityAlignment
A0A2P5CPE8 Uncharacterized protein2.3e-1135.65Show/hide
Query:  LSAVLLAVARPGAKWD--GHGPTRTLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPIDLGQILVETVSQTTTKPKGAMFCPGLVT
        L+ VL  VA  GA+W+    G    L+S  L+  A  W H++K+R++PTTH  T+S +R++L+Y ++ G  I++GQI+   +     +  GA+F P L+T
Subjt:  LSAVLLAVARPGAKWD--GHGPTRTLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPIDLGQILVETVSQTTTKPKGAMFCPGLVT

Query:  RLCRASSLVPVADEE
        R+C  +    + +EE
Subjt:  RLCRASSLVPVADEE

A0A392M2J7 Uncharacterized protein (Fragment)7.3e-1330.3Show/hide
Query:  LLNCLDDDFLSAVLLAVARPGAKWDGHGPTR--TLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPIDLGQILVETVSQTTTKPKG
        L++ + D+ L+AV+  +  PG +W          +K   L  E   W   +K+ I+PTTH+ T++  R++L++CIM+  PI++G+I+ + +   +T+ +G
Subjt:  LLNCLDDDFLSAVLLAVARPGAKWDGHGPTR--TLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPIDLGQILVETVSQTTTKPKG

Query:  AMFCPGLVTRLCRASSLVPVADEEIRPMRKDF
         ++ P L+T LC+A  +   A +E  P  + F
Subjt:  AMFCPGLVTRLCRASSLVPVADEEIRPMRKDF

A0A6A2WSK8 Uncharacterized protein1.1e-1133.06Show/hide
Query:  DDDFLSAVLLAVARPGAKWDGHGPTR-TLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPIDLGQILVETVSQTTTKPKGAMFCPG
        D +    VL  +     +W+G   +R ++  + L   A  W H++K+++MPT+H+ T+SL  L+L++ IMK   ID+G+I+V+ V+    K   A+  P 
Subjt:  DDDFLSAVLLAVARPGAKWDGHGPTR-TLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPIDLGQILVETVSQTTTKPKGAMFCPG

Query:  LVTRLCRASSLVPVADEEIRP
        L+T LCR   +     +EI P
Subjt:  LVTRLCRASSLVPVADEEIRP

A0A6A2Y697 Reverse transcriptase domain-containing protein2.1e-1237.5Show/hide
Query:  KWDGHGPTR-TLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPIDLGQILVETVSQTTTKPKGAMFCPGLVTRLCRASSLVPVADE
        +W+G   +R ++  + L   A  W H++K+++MPT+H+ T+SL RL+L++ IM   PID+G+I+V+ V    +K   A+  P L+T LCR   +   A +
Subjt:  KWDGHGPTR-TLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPIDLGQILVETVSQTTTKPKGAMFCPGLVTRLCRASSLVPVADE

Query:  EIRP
        EI P
Subjt:  EIRP

A0A6A2YMQ9 Uncharacterized protein1.1e-1133.06Show/hide
Query:  DDDFLSAVLLAVARPGAKWDGHGPTR-TLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPIDLGQILVETVSQTTTKPKGAMFCPG
        D +    VL  +     +W+G   +R ++  + L   A  W H++K+++MPT+++ T+SL RL+L++ I +  PID+G+I+V+ V+    K   A+  P 
Subjt:  DDDFLSAVLLAVARPGAKWDGHGPTR-TLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPIDLGQILVETVSQTTTKPKGAMFCPG

Query:  LVTRLCRASSLVPVADEEIRP
        L+T LCR   +   A +EI P
Subjt:  LVTRLCRASSLVPVADEEIRP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAACAGTTTGCGAAAACCCTCGCAACTATGCCCCTGCGTTAGTCCACGACTTCTATCGGGCGTAGTGGCAAGAAAAGGGAATGCACTCCTCAACTGCCTCGATGA
TGACTTCCTGAGCGCAGTACTTCTTGCGGTGGCTCGACCTGGAGCCAAATGGGACGGCCACGGCCCTACGAGGACCCTGAAATCGCAGCTGCTCGACTTTGAAGCCTCCT
ACTGGATGCATTGGGTGAAGAATCGCATCATGCCCACAACGCATGATGCCACATTGAGCCTTCAACGGTTAATTCTTGTTTATTGCATCATGAAGGGAACCCCAATTGAC
TTGGGCCAGATCCTCGTCGAAACAGTGAGCCAGACTACCACAAAACCTAAAGGCGCAATGTTTTGCCCAGGCCTTGTCACCCGTTTATGCCGTGCATCAAGCCTCGTGCC
CGTAGCAGATGAAGAAATCCGACCCATGCGGAAGGATTTTGACGACCAATGGTGGGCGCGCGTAACCAGCACCCGCGATAGGCCTCTTGCACCTGAGAAGCCAAAGAAAA
AGAGGCGCAAGCAAACTGCGGGCAGAAACCCACCACCAGCCGCACGGATCCCTCAATCTATTCCACCAGCGCAGGAAAGCACTGTCTGCGCCCAACCTCAGGGACCCGTG
CCACCACCGCAAGAAAGCTTGCCACCGCCACCACCACCGCCACTGCCACCACCAATTGTCCAGAACACACCTCCTCCGCAGCACAACGACGACTTGCGATCAGAGGAGAT
TTTTGAAGAATCATTGTCGAGCCTCACTCGCAATGACGAAGTTCCTGCGTCGAGCCCCACACCGCAAGCCACAGATTCTGAGAGCCCAAATCAGGCTGCGGCTGATCTAC
TGATTGATGTGGATTCAGCCCTTATCTTTTCAGAGTTGCGGCAAATAATTCAAGAAATTGTAGAGCCCCTGCGCCAGCAGCAAGAACGGATGTGCCAGCAACAAGAATTG
CTGCGCAAGCAACAAGAAGAACTGTCGCAGCGAGTAAATGCCTTAGTCCTTTTTCTAATGCGATGGACTGAAGGTTTTGGTCGTTTGCCAGTCACGCCAAACTTGTTCGC
ACGACCAGCTGCTCAACAAAGACCCCCTGGCACAGGCCCATCACAAGTGCGCGAATCCATGCCTCCACCTGCGCCGAGGAACCCAAGACCACCTCCACCACCACTGCTGC
AGGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAAACAGTTTGCGAAAACCCTCGCAACTATGCCCCTGCGTTAGTCCACGACTTCTATCGGGCGTAGTGGCAAGAAAAGGGAATGCACTCCTCAACTGCCTCGATGA
TGACTTCCTGAGCGCAGTACTTCTTGCGGTGGCTCGACCTGGAGCCAAATGGGACGGCCACGGCCCTACGAGGACCCTGAAATCGCAGCTGCTCGACTTTGAAGCCTCCT
ACTGGATGCATTGGGTGAAGAATCGCATCATGCCCACAACGCATGATGCCACATTGAGCCTTCAACGGTTAATTCTTGTTTATTGCATCATGAAGGGAACCCCAATTGAC
TTGGGCCAGATCCTCGTCGAAACAGTGAGCCAGACTACCACAAAACCTAAAGGCGCAATGTTTTGCCCAGGCCTTGTCACCCGTTTATGCCGTGCATCAAGCCTCGTGCC
CGTAGCAGATGAAGAAATCCGACCCATGCGGAAGGATTTTGACGACCAATGGTGGGCGCGCGTAACCAGCACCCGCGATAGGCCTCTTGCACCTGAGAAGCCAAAGAAAA
AGAGGCGCAAGCAAACTGCGGGCAGAAACCCACCACCAGCCGCACGGATCCCTCAATCTATTCCACCAGCGCAGGAAAGCACTGTCTGCGCCCAACCTCAGGGACCCGTG
CCACCACCGCAAGAAAGCTTGCCACCGCCACCACCACCGCCACTGCCACCACCAATTGTCCAGAACACACCTCCTCCGCAGCACAACGACGACTTGCGATCAGAGGAGAT
TTTTGAAGAATCATTGTCGAGCCTCACTCGCAATGACGAAGTTCCTGCGTCGAGCCCCACACCGCAAGCCACAGATTCTGAGAGCCCAAATCAGGCTGCGGCTGATCTAC
TGATTGATGTGGATTCAGCCCTTATCTTTTCAGAGTTGCGGCAAATAATTCAAGAAATTGTAGAGCCCCTGCGCCAGCAGCAAGAACGGATGTGCCAGCAACAAGAATTG
CTGCGCAAGCAACAAGAAGAACTGTCGCAGCGAGTAAATGCCTTAGTCCTTTTTCTAATGCGATGGACTGAAGGTTTTGGTCGTTTGCCAGTCACGCCAAACTTGTTCGC
ACGACCAGCTGCTCAACAAAGACCCCCTGGCACAGGCCCATCACAAGTGCGCGAATCCATGCCTCCACCTGCGCCGAGGAACCCAAGACCACCTCCACCACCACTGCTGC
AGGAGTAG
Protein sequenceShow/hide protein sequence
MGNSLRKPSQLCPCVSPRLLSGVVARKGNALLNCLDDDFLSAVLLAVARPGAKWDGHGPTRTLKSQLLDFEASYWMHWVKNRIMPTTHDATLSLQRLILVYCIMKGTPID
LGQILVETVSQTTTKPKGAMFCPGLVTRLCRASSLVPVADEEIRPMRKDFDDQWWARVTSTRDRPLAPEKPKKKRRKQTAGRNPPPAARIPQSIPPAQESTVCAQPQGPV
PPPQESLPPPPPPPLPPPIVQNTPPPQHNDDLRSEEIFEESLSSLTRNDEVPASSPTPQATDSESPNQAAADLLIDVDSALIFSELRQIIQEIVEPLRQQQERMCQQQEL
LRKQQEELSQRVNALVLFLMRWTEGFGRLPVTPNLFARPAAQQRPPGTGPSQVRESMPPPAPRNPRPPPPPLLQE