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Spg005116 (gene) of Sponge gourd (cylindrica) v1 genome

Gene IDSpg005116
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationscaffold11:12707713..12710949
RNA-Seq ExpressionSpg005116
SyntenySpg005116
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026300.1 uncharacterized protein E6C27_scaffold19G003090 [Cucumis melo var. makuwa]1.2e-2231.12Show/hide
Query:  ETLETITCHIVDVVEDDDVPASSSGTMAGPGDLSSFSIKDLLSLPQEAKSVL--ALIES----------------------NEPQ---------------
        E LE + CH ++  +++ +P  S        DL  F++ D LS PQE K+++  AL+ S                      N P+               
Subjt:  ETLETITCHIVDVVEDDDVPASSSGTMAGPGDLSSFSIKDLLSLPQEAKSVL--ALIES----------------------NEPQ---------------

Query:  ---ANARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLK--------------------------------
           +   KE  +     +  KGE STS  K  ++  EK SN PILRYVPLSRR+KGES F   P+ LK                                
Subjt:  ---ANARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLK--------------------------------

Query:  --------------------------------------------------------VVRKGLGYKSPELVRITRRGKAKVADINHIKVEEVDDSKEKESV
                                                                V RKGLGYKSPE +RITR+GK KV D N+I VEEVD  +EKE  
Subjt:  --------------------------------------------------------VVRKGLGYKSPELVRITRRGKAKVADINHIKVEEVDDSKEKESV

Query:  DQRTSVFRRIRPPVARVSVFQRLSVNEMEEE
         QRTS F RIRP VAR  VF+RLS+ E E +
Subjt:  DQRTSVFRRIRPPVARVSVFQRLSVNEMEEE

KAA0047672.1 uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa]3.8e-2443.72Show/hide
Query:  EAKSVLALIESNEP----QANARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLKV---------------
        EA S+  L+ + E     ++ A ++  +  +     K E STS  K  ++ +E  SN PILRYVPLSR +KGES F   P+ LKV               
Subjt:  EAKSVLALIESNEP----QANARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLKV---------------

Query:  --VRKGLGYKSPELVRITRRGKAKVADINHIKVEEVDDSKEKESVDQRTSVFRRIRPPVARVSVFQRLSVNEMEEESAQPTNS
           +KGLGYKSPE +RITR+GK KV D NHI V+EVD  + KE   QRTS F RI P VAR  VF+RLS+ E + +  Q T++
Subjt:  --VRKGLGYKSPELVRITRRGKAKVADINHIKVEEVDDSKEKESVDQRTSVFRRIRPPVARVSVFQRLSVNEMEEESAQPTNS

KAA0047672.1 uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa]6.9e-0228.95Show/hide
Query:  VKSQRKKGKKKSRRSKPVVEESEDFFCSPQPITLTKYFPRRFLDDSQRETLETITCHIVDVVEDDDVPASSSGTMAGPGDLSSFSIKDLLSLPQEAKSVL
        V+  ++   + S+  + +++E ++ +       +T+   R+FL D Q E    + CH ++  E++ +P  S        DLS F++ DLLSLPQE K++L
Subjt:  VKSQRKKGKKKSRRSKPVVEESEDFFCSPQPITLTKYFPRRFLDDSQRETLETITCHIVDVVEDDDVPASSSGTMAGPGDLSSFSIKDLLSLPQEAKSVL

Query:  --ALIESNEPQANA
          AL+ S    ++A
Subjt:  --ALIESNEPQANA

KAA0047672.1 uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa]2.4e-2346.15Show/hide
Query:  ARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLK------------------------VVRKGLGYKSPEL
        A KE  + +     +KGE STS  K  ++ DEK SN  ILRYVPLSRR+KGES F   P+ LK                        V RKG GYKSPE 
Subjt:  ARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLK------------------------VVRKGLGYKSPEL

Query:  VRITRRGKAKVADINHIKVEEVDDSKEKESVDQRTSVFRRIRPPVARVSVFQRLSVNEMEEESAQPTNS
        + I R+ K KV D NHI V EVD  +EKE   QR S F +IRP V R +VF+RLSV + E +  Q T+S
Subjt:  VRITRRGKAKVADINHIKVEEVDDSKEKESVDQRTSVFRRIRPPVARVSVFQRLSVNEMEEESAQPTNS

KAA0055957.1 uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]7.1e-2340.2Show/hide
Query:  ARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLK-------------------------------------
        A KE  + +      K E ST+  K  ++ DEK SN PILRYVPLSRR+KGES F   P+ LK                                     
Subjt:  ARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLK-------------------------------------

Query:  -----------------VVRKGLGYKSPELVRITRRGKAKVADINHIKVEEVDDSKEKESVDQRTSVFRRIRPPVARVSVFQRLSVNEMEEESAQPTNS
                         + RKGLGYKSPE +RITR+GK KV D NHI V+EVD  +EKE  +QRTS F RI P VAR  VF+RLS+ E + +  Q T++
Subjt:  -----------------VVRKGLGYKSPELVRITRRGKAKVADINHIKVEEVDDSKEKESVDQRTSVFRRIRPPVARVSVFQRLSVNEMEEESAQPTNS

TYK21493.1 uncharacterized protein E5676_scaffold305G00300 [Cucumis melo var. makuwa]1.2e-2231.12Show/hide
Query:  ETLETITCHIVDVVEDDDVPASSSGTMAGPGDLSSFSIKDLLSLPQEAKSVL--ALIES----------------------NEPQ---------------
        E LE + CH ++  +++ +P  S        DL  F++ D LS PQE K+++  AL+ S                      N P+               
Subjt:  ETLETITCHIVDVVEDDDVPASSSGTMAGPGDLSSFSIKDLLSLPQEAKSVL--ALIES----------------------NEPQ---------------

Query:  ---ANARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLK--------------------------------
           +   KE  +     +  KGE STS  K  ++  EK SN PILRYVPLSRR+KGES F   P+ LK                                
Subjt:  ---ANARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLK--------------------------------

Query:  --------------------------------------------------------VVRKGLGYKSPELVRITRRGKAKVADINHIKVEEVDDSKEKESV
                                                                V RKGLGYKSPE +RITR+GK KV D N+I VEEVD  +EKE  
Subjt:  --------------------------------------------------------VVRKGLGYKSPELVRITRRGKAKVADINHIKVEEVDDSKEKESV

Query:  DQRTSVFRRIRPPVARVSVFQRLSVNEMEEE
         QRTS F RIRP VAR  VF+RLS+ E E +
Subjt:  DQRTSVFRRIRPPVARVSVFQRLSVNEMEEE

TrEMBL top hitse value%identityAlignment
A0A5A7SJC0 Ribonuclease H5.8e-2331.12Show/hide
Query:  ETLETITCHIVDVVEDDDVPASSSGTMAGPGDLSSFSIKDLLSLPQEAKSVL--ALIES----------------------NEPQ---------------
        E LE + CH ++  +++ +P  S        DL  F++ D LS PQE K+++  AL+ S                      N P+               
Subjt:  ETLETITCHIVDVVEDDDVPASSSGTMAGPGDLSSFSIKDLLSLPQEAKSVL--ALIES----------------------NEPQ---------------

Query:  ---ANARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLK--------------------------------
           +   KE  +     +  KGE STS  K  ++  EK SN PILRYVPLSRR+KGES F   P+ LK                                
Subjt:  ---ANARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLK--------------------------------

Query:  --------------------------------------------------------VVRKGLGYKSPELVRITRRGKAKVADINHIKVEEVDDSKEKESV
                                                                V RKGLGYKSPE +RITR+GK KV D N+I VEEVD  +EKE  
Subjt:  --------------------------------------------------------VVRKGLGYKSPELVRITRRGKAKVADINHIKVEEVDDSKEKESV

Query:  DQRTSVFRRIRPPVARVSVFQRLSVNEMEEE
         QRTS F RIRP VAR  VF+RLS+ E E +
Subjt:  DQRTSVFRRIRPPVARVSVFQRLSVNEMEEE

A0A5A7UMY2 Reverse transcriptase domain-containing protein3.4e-2340.2Show/hide
Query:  ARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLK-------------------------------------
        A KE  + +      K E ST+  K  ++ DEK SN PILRYVPLSRR+KGES F   P+ LK                                     
Subjt:  ARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLK-------------------------------------

Query:  -----------------VVRKGLGYKSPELVRITRRGKAKVADINHIKVEEVDDSKEKESVDQRTSVFRRIRPPVARVSVFQRLSVNEMEEESAQPTNS
                         + RKGLGYKSPE +RITR+GK KV D NHI V+EVD  +EKE  +QRTS F RI P VAR  VF+RLS+ E + +  Q T++
Subjt:  -----------------VVRKGLGYKSPELVRITRRGKAKVADINHIKVEEVDDSKEKESVDQRTSVFRRIRPPVARVSVFQRLSVNEMEEESAQPTNS

A0A5D3C8N8 Ribonuclease H1.8e-2443.72Show/hide
Query:  EAKSVLALIESNEP----QANARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLKV---------------
        EA S+  L+ + E     ++ A ++  +  +     K E STS  K  ++ +E  SN PILRYVPLSR +KGES F   P+ LKV               
Subjt:  EAKSVLALIESNEP----QANARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLKV---------------

Query:  --VRKGLGYKSPELVRITRRGKAKVADINHIKVEEVDDSKEKESVDQRTSVFRRIRPPVARVSVFQRLSVNEMEEESAQPTNS
           +KGLGYKSPE +RITR+GK KV D NHI V+EVD  + KE   QRTS F RI P VAR  VF+RLS+ E + +  Q T++
Subjt:  --VRKGLGYKSPELVRITRRGKAKVADINHIKVEEVDDSKEKESVDQRTSVFRRIRPPVARVSVFQRLSVNEMEEESAQPTNS

A0A5D3C8N8 Ribonuclease H3.3e-0228.95Show/hide
Query:  VKSQRKKGKKKSRRSKPVVEESEDFFCSPQPITLTKYFPRRFLDDSQRETLETITCHIVDVVEDDDVPASSSGTMAGPGDLSSFSIKDLLSLPQEAKSVL
        V+  ++   + S+  + +++E ++ +       +T+   R+FL D Q E    + CH ++  E++ +P  S        DLS F++ DLLSLPQE K++L
Subjt:  VKSQRKKGKKKSRRSKPVVEESEDFFCSPQPITLTKYFPRRFLDDSQRETLETITCHIVDVVEDDDVPASSSGTMAGPGDLSSFSIKDLLSLPQEAKSVL

Query:  --ALIESNEPQANA
          AL+ S    ++A
Subjt:  --ALIESNEPQANA

A0A5D3C8N8 Ribonuclease H1.2e-2346.15Show/hide
Query:  ARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLK------------------------VVRKGLGYKSPEL
        A KE  + +     +KGE STS  K  ++ DEK SN  ILRYVPLSRR+KGES F   P+ LK                        V RKG GYKSPE 
Subjt:  ARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLK------------------------VVRKGLGYKSPEL

Query:  VRITRRGKAKVADINHIKVEEVDDSKEKESVDQRTSVFRRIRPPVARVSVFQRLSVNEMEEESAQPTNS
        + I R+ K KV D NHI V EVD  +EKE   QR S F +IRP V R +VF+RLSV + E +  Q T+S
Subjt:  VRITRRGKAKVADINHIKVEEVDDSKEKESVDQRTSVFRRIRPPVARVSVFQRLSVNEMEEESAQPTNS

A0A5D3DD54 Ribonuclease H5.8e-2331.12Show/hide
Query:  ETLETITCHIVDVVEDDDVPASSSGTMAGPGDLSSFSIKDLLSLPQEAKSVL--ALIES----------------------NEPQ---------------
        E LE + CH ++  +++ +P  S        DL  F++ D LS PQE K+++  AL+ S                      N P+               
Subjt:  ETLETITCHIVDVVEDDDVPASSSGTMAGPGDLSSFSIKDLLSLPQEAKSVL--ALIES----------------------NEPQ---------------

Query:  ---ANARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLK--------------------------------
           +   KE  +     +  KGE STS  K  ++  EK SN PILRYVPLSRR+KGES F   P+ LK                                
Subjt:  ---ANARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLK--------------------------------

Query:  --------------------------------------------------------VVRKGLGYKSPELVRITRRGKAKVADINHIKVEEVDDSKEKESV
                                                                V RKGLGYKSPE +RITR+GK KV D N+I VEEVD  +EKE  
Subjt:  --------------------------------------------------------VVRKGLGYKSPELVRITRRGKAKVADINHIKVEEVDDSKEKESV

Query:  DQRTSVFRRIRPPVARVSVFQRLSVNEMEEE
         QRTS F RIRP VAR  VF+RLS+ E E +
Subjt:  DQRTSVFRRIRPPVARVSVFQRLSVNEMEEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCACAGCGTCGAGACGCTATGACCTTTTGCCGCCTGAATCAGAAAAGGAAAGGCAGCGTCGAGACGCTCCAAGAGCAGCGTCCCGACGCTGTTACACACTGAAGGA
GTCCCGCCTATTTCGAGATAGTAAAAGAAAGGTGAAGTCTCAAAGGAAGAAGGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTT
GCTCTCCACAACCCATAACTTTGACAAAATACTTTCCAAGGCGCTTTCTCGATGATAGTCAAAGAGAGACACTTGAAACTATCACGTGTCACATTGTAGACGTGGTGGAA
GATGATGATGTTCCTGCTAGCTCCTCGGGAACGATGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCT
TGCATTGATAGAGTCTAATGAGCCACAAGCAAATGCAAGAAAGGAAGCTGTTGAAGATGTGAAGGCATCCGACCTGAAAAAGGGTGAAACATCTACAAGTCTTGTGAAAC
CTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGCTACGTCCCTTTATCTCGACGTAGAAAGGGTGAATCAACTTTCACTGGATGTCCAAAAAGCTTA
AAGGTCGTGAGAAAAGGACTTGGATATAAGTCGCCCGAGCTGGTTCGCATAACAAGAAGAGGGAAGGCGAAAGTGGCAGACATAAATCATATAAAAGTAGAGGAGGTTGA
TGACTCAAAAGAAAAAGAGAGCGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGTTTCAGTCTTTCAGAGATTAAGTGTGAATGAAATGG
AAGAAGAAAGCGCACAACCTACCAATAGCTCCACTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCACAGCGTCGAGACGCTATGACCTTTTGCCGCCTGAATCAGAAAAGGAAAGGCAGCGTCGAGACGCTCCAAGAGCAGCGTCCCGACGCTGTTACACACTGAAGGA
GTCCCGCCTATTTCGAGATAGTAAAAGAAAGGTGAAGTCTCAAAGGAAGAAGGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTT
GCTCTCCACAACCCATAACTTTGACAAAATACTTTCCAAGGCGCTTTCTCGATGATAGTCAAAGAGAGACACTTGAAACTATCACGTGTCACATTGTAGACGTGGTGGAA
GATGATGATGTTCCTGCTAGCTCCTCGGGAACGATGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCT
TGCATTGATAGAGTCTAATGAGCCACAAGCAAATGCAAGAAAGGAAGCTGTTGAAGATGTGAAGGCATCCGACCTGAAAAAGGGTGAAACATCTACAAGTCTTGTGAAAC
CTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGCTACGTCCCTTTATCTCGACGTAGAAAGGGTGAATCAACTTTCACTGGATGTCCAAAAAGCTTA
AAGGTCGTGAGAAAAGGACTTGGATATAAGTCGCCCGAGCTGGTTCGCATAACAAGAAGAGGGAAGGCGAAAGTGGCAGACATAAATCATATAAAAGTAGAGGAGGTTGA
TGACTCAAAAGAAAAAGAGAGCGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGTTTCAGTCTTTCAGAGATTAAGTGTGAATGAAATGG
AAGAAGAAAGCGCACAACCTACCAATAGCTCCACTTGA
Protein sequenceShow/hide protein sequence
MVTASRRYDLLPPESEKERQRRDAPRAASRRCYTLKESRLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFCSPQPITLTKYFPRRFLDDSQRETLETITCHIVDVVE
DDDVPASSSGTMAGPGDLSSFSIKDLLSLPQEAKSVLALIESNEPQANARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSL
KVVRKGLGYKSPELVRITRRGKAKVADINHIKVEEVDDSKEKESVDQRTSVFRRIRPPVARVSVFQRLSVNEMEEESAQPTNSST